Wall clock time and date at job start Wed Apr 1 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34784 * 119.99828 * 2 1 4 4 O 1.21572 * 119.99765 * 184.32442 * 3 2 1 5 5 C 1.47755 * 120.00236 * 4.32684 * 3 2 1 6 6 C 1.40607 * 120.26932 * 327.96541 * 5 3 2 7 7 N 1.30792 * 121.54430 * 179.97438 * 6 5 3 8 8 C 1.33826 * 121.72724 * 359.97438 * 7 6 5 9 9 C 1.40542 * 120.80186 * 180.02562 * 8 7 6 10 10 C 1.36091 * 119.85058 * 179.77229 * 9 8 7 11 11 C 1.39562 * 121.06394 * 0.52094 * 10 9 8 12 12 F 1.35102 * 119.61226 * 179.73227 * 11 10 9 13 13 C 1.36345 * 120.77288 * 359.44942 * 11 10 9 14 14 C 1.40507 * 119.60704 * 0.28106 * 13 11 10 15 15 C 1.39005 * 120.27282 * 147.94059 * 5 3 2 16 16 C 1.46503 * 120.00450 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.88850 * 176.11741 * 16 2 1 18 18 C 1.55158 * 110.99802 * 299.99784 * 16 2 1 19 19 C 1.54328 * 102.93952 * 153.57368 * 18 16 2 20 20 N 1.47024 * 107.27170 * 337.80471 * 19 18 16 21 21 C 1.36936 * 125.64701 * 178.89174 * 20 19 18 22 22 H 1.07998 * 120.00113 * 180.02562 * 21 20 19 23 23 C 1.38816 * 120.00040 * 0.02891 * 21 20 19 24 24 N 1.31615 * 120.00028 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99721 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47142 * 89.99825 * 25 23 21 27 27 H 1.48504 * 109.46771 * 210.00146 * 25 23 21 28 28 H 1.48503 * 109.47237 * 329.99474 * 25 23 21 29 29 C 1.47421 * 108.70055 * 358.94240 * 20 19 18 30 30 H 1.09001 * 109.47476 * 94.63164 * 1 2 3 31 31 H 1.09002 * 109.46906 * 214.63447 * 1 2 3 32 32 H 1.09006 * 109.47318 * 334.63083 * 1 2 3 33 33 H 1.08004 * 119.22408 * 359.95271 * 6 5 3 34 34 H 1.08005 * 120.06893 * 0.02562 * 9 8 7 35 35 H 1.07998 * 119.46542 * 180.27360 * 10 9 8 36 36 H 1.08000 * 120.19721 * 180.29749 * 13 11 10 37 37 H 1.07993 * 121.01451 * 0.02562 * 15 5 3 38 38 H 1.09001 * 110.71871 * 271.93316 * 18 16 2 39 39 H 1.08998 * 110.72445 * 35.21215 * 18 16 2 40 40 H 1.09001 * 109.88129 * 97.22092 * 19 18 16 41 41 H 1.08996 * 109.88097 * 218.23164 * 19 18 16 42 42 H 0.97000 * 119.99798 * 180.02562 * 24 23 21 43 43 H 1.09003 * 110.36550 * 265.28270 * 29 20 19 44 44 H 1.08998 * 110.36544 * 142.96868 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3519 1.1688 -0.0794 5 6 1.4032 2.4451 0.0965 6 6 0.1180 2.5668 -0.4606 7 7 -0.5556 3.6857 -0.3892 8 6 -0.0572 4.7697 0.2170 9 6 -0.7982 5.9621 0.2829 10 6 -0.2745 7.0514 0.9082 11 6 0.9978 7.0109 1.4804 12 9 1.4913 8.1113 2.0894 13 6 1.7463 5.8721 1.4371 14 6 1.2329 4.7277 0.8037 15 6 1.9758 3.5365 0.7393 16 6 2.1975 -1.2687 -0.0006 17 1 3.2717 -1.0971 -0.0694 18 6 1.8484 -2.1129 1.2536 19 6 2.1064 -3.5588 0.7797 20 7 2.0264 -3.5578 -0.6884 21 6 2.2177 -4.6449 -1.4988 22 1 2.1372 -4.5403 -2.5707 23 6 2.5149 -5.8815 -0.9426 24 7 2.6134 -6.0090 0.3637 25 14 2.7751 -7.3646 -2.0481 26 1 4.2106 -7.4625 -2.4153 27 1 2.3630 -8.5966 -1.3286 28 1 1.9584 -7.2138 -3.2791 29 6 1.7074 -2.1923 -1.1435 30 1 -0.3634 -0.0830 -1.0243 31 1 -0.3633 -0.8456 0.5841 32 1 -0.3634 0.9286 0.4403 33 1 -0.3232 1.7166 -0.9595 34 1 -1.7828 6.0124 -0.1582 35 1 -0.8511 7.9631 0.9591 36 1 2.7278 5.8497 1.8871 37 1 2.9613 3.4709 1.1761 38 1 2.5044 -1.8569 2.0856 39 1 0.8027 -1.9785 1.5301 40 1 3.0981 -3.8814 1.0966 41 1 1.3499 -4.2252 1.1940 42 1 2.8215 -6.8731 0.7523 43 1 0.6325 -2.0815 -1.2864 44 1 2.2390 -1.9667 -2.0679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033554866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:01 Heat of formation + Delta-G solvation = 31.509782 kcal Electronic energy + Delta-G solvation = -28801.508972 eV Core-core repulsion = 24635.191211 eV Total energy + Delta-G solvation = -4166.317761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.38794 -41.46653 -39.87981 -37.55965 -37.08988 -35.03534 -33.93959 -32.36884 -31.04462 -30.31776 -29.23464 -27.75935 -27.03154 -25.36238 -24.36302 -24.07488 -22.79850 -21.30801 -20.18314 -19.37814 -19.08111 -18.20507 -17.51179 -17.18033 -17.01752 -16.15455 -16.10250 -15.73460 -15.36732 -14.99046 -14.69582 -14.42180 -14.33054 -14.22899 -14.07028 -13.69201 -13.59210 -13.32731 -13.06933 -12.86206 -12.47109 -12.30733 -12.14818 -11.86580 -11.79097 -11.50964 -11.05385 -10.97449 -10.90227 -10.82649 -10.44046 -10.25095 -10.10902 -9.90206 -9.75388 -9.67533 -9.19339 -8.76267 -8.66917 -8.48151 -6.88987 -5.75087 -3.09494 -0.27276 0.08744 1.35368 2.05823 2.77013 2.93033 3.38994 3.44005 3.45674 3.55858 3.66526 3.75554 4.00859 4.12801 4.33878 4.37144 4.41970 4.47785 4.58612 4.88721 5.01520 5.13536 5.20918 5.28287 5.30834 5.40294 5.41753 5.53448 5.56043 5.56877 5.59465 5.63263 5.69676 5.79221 5.95660 6.10985 6.21448 6.23806 6.43007 6.49722 6.60507 6.83924 7.36413 7.39042 7.51087 7.55283 7.78018 8.06602 8.20829 9.17245 9.77136 10.41470 11.36472 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.035052 B = 0.002002 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.630472 B =13982.611800 C =14297.500911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.591 5.591 3 C 0.560 3.440 4 O -0.531 6.531 5 C -0.174 4.174 6 C 0.147 3.853 7 N -0.471 5.471 8 C 0.128 3.872 9 C -0.063 4.063 10 C -0.127 4.127 11 C 0.100 3.900 12 F -0.136 7.136 13 C -0.124 4.124 14 C -0.089 4.089 15 C 0.004 3.996 16 C 0.122 3.878 17 H 0.109 0.891 18 C -0.153 4.153 19 C 0.179 3.821 20 N -0.602 5.602 21 C -0.229 4.229 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.132 3.868 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.183 0.817 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.253 0.747 43 H 0.024 0.976 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 25.421 3.179 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.322 5.322 3 C 0.346 3.654 4 O -0.409 6.409 5 C -0.179 4.179 6 C -0.025 4.025 7 N -0.178 5.178 8 C 0.007 3.993 9 C -0.081 4.081 10 C -0.147 4.147 11 C 0.081 3.919 12 F -0.114 7.114 13 C -0.144 4.144 14 C -0.091 4.091 15 C -0.023 4.023 16 C 0.019 3.981 17 H 0.127 0.873 18 C -0.192 4.192 19 C 0.054 3.946 20 N -0.329 5.329 21 C -0.357 4.357 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.744 3.256 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.200 0.800 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.000 25.361 2.842 26.744 hybrid contribution 1.006 -0.727 0.010 1.241 sum -6.994 24.634 2.853 25.766 Atomic orbital electron populations 1.22439 0.80056 1.03776 1.02427 1.47702 1.06944 1.05910 1.71614 1.17985 0.87012 0.83076 0.77280 1.90810 1.13279 1.86952 1.49831 1.21040 0.97113 0.95897 1.03847 1.23931 0.89518 0.95571 0.93482 1.68056 1.35172 0.98757 1.15802 1.19058 0.91277 0.93657 0.95307 1.20725 1.00218 0.89812 0.97370 1.20977 0.94411 1.00503 0.98856 1.17355 0.93557 0.83571 0.97449 1.91537 1.87622 1.51539 1.80726 1.20985 1.01172 0.91211 1.01053 1.18480 0.95440 0.94479 1.00674 1.21864 0.98816 0.89446 0.92130 1.22558 0.97465 0.80529 0.97523 0.87296 1.23263 1.00612 0.98715 0.96647 1.21151 1.01127 0.88826 0.83485 1.44377 1.83154 1.03143 1.02249 1.19049 1.41373 0.85930 0.89384 0.90323 1.24821 1.01795 0.97731 0.96044 1.69951 1.54775 1.23485 1.08685 0.86092 0.77937 0.82259 0.79298 1.21539 1.21659 1.20658 1.21741 0.97197 0.85910 0.94731 0.91323 0.89871 0.90200 0.80024 0.83278 0.83729 0.83568 0.82863 0.91822 0.91988 0.93251 0.93564 0.93670 0.95889 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 7.52 59.84 0.45 1.03 16 2 N -0.59 -8.32 2.91 -172.62 -0.50 -8.82 16 3 C 0.56 8.13 7.44 -12.37 -0.09 8.04 16 4 O -0.53 -9.61 16.17 5.30 0.09 -9.52 16 5 C -0.17 -2.01 5.47 -104.83 -0.57 -2.58 16 6 C 0.15 1.49 8.58 -17.10 -0.15 1.35 16 7 N -0.47 -4.95 10.30 -10.66 -0.11 -5.06 16 8 C 0.13 1.26 6.61 -84.77 -0.56 0.70 16 9 C -0.06 -0.46 9.97 -39.48 -0.39 -0.86 16 10 C -0.13 -0.83 9.92 -39.86 -0.40 -1.22 16 11 C 0.10 0.78 7.24 -39.77 -0.29 0.50 16 12 F -0.14 -1.14 17.25 2.25 0.04 -1.10 16 13 C -0.12 -1.01 9.73 -39.41 -0.38 -1.39 16 14 C -0.09 -0.85 5.74 -106.82 -0.61 -1.46 16 15 C 0.00 0.04 9.48 -38.43 -0.36 -0.32 16 16 C 0.12 2.16 3.46 -65.78 -0.23 1.94 16 17 H 0.11 2.16 7.02 -51.93 -0.36 1.80 16 18 C -0.15 -2.76 6.53 -24.89 -0.16 -2.93 16 19 C 0.18 4.23 5.37 -3.06 -0.02 4.21 16 20 N -0.60 -15.04 3.39 -170.07 -0.58 -15.62 16 21 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 22 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.70 10.31 55.49 0.57 -26.13 16 25 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 29 C 0.13 2.63 6.79 -2.53 -0.02 2.62 16 30 H 0.07 0.62 7.23 -51.93 -0.38 0.24 16 31 H 0.08 0.90 6.38 -51.93 -0.33 0.57 16 32 H 0.08 0.68 4.71 -51.93 -0.24 0.44 16 33 H 0.18 1.51 4.79 -52.48 -0.25 1.26 16 34 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.15 1.44 7.99 -52.49 -0.42 1.03 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.00 6.36 -51.93 -0.33 0.67 16 40 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 41 H 0.05 1.19 7.51 -51.93 -0.39 0.80 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.44 6.89 -51.93 -0.36 0.08 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -32.70 359.67 -9.24 -41.94 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.11 Total: -0.83 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -4.03 Total: 2.86 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.62 Total: -55.63 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.70 -9.24 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033554866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.445 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds