Wall clock time and date at job start Wed Apr 1 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46951 * 2 1 4 4 O 1.34250 * 126.52394 * 270.18221 * 3 2 1 5 5 C 1.34058 * 108.22794 * 180.27143 * 4 3 2 6 6 N 1.29935 * 109.24012 * 359.72901 * 5 4 3 7 7 C 1.36075 * 108.47917 * 0.02562 * 6 5 4 8 8 C 1.47413 * 126.45028 * 180.02562 * 7 6 5 9 9 O 1.21610 * 119.99965 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99989 * 359.74646 * 8 7 6 11 11 C 1.46497 * 119.99810 * 180.27937 * 10 8 7 12 12 C 1.53006 * 109.46829 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.49575 * 55.06322 * 12 11 10 14 14 C 1.53191 * 109.49774 * 294.99744 * 12 11 10 15 15 N 1.46923 * 108.77634 * 185.41740 * 14 12 11 16 16 C 1.36941 * 120.62821 * 233.58910 * 15 14 12 17 17 H 1.07998 * 120.00034 * 27.67740 * 16 15 14 18 18 C 1.38811 * 120.00040 * 207.67862 * 16 15 14 19 19 N 1.31619 * 119.99697 * 17.37162 * 18 16 15 20 20 Si 1.86796 * 120.00239 * 197.37663 * 18 16 15 21 21 H 1.48501 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47400 * 119.99613 * 20 18 16 23 23 H 1.48498 * 109.47288 * 239.99923 * 20 18 16 24 24 C 1.46923 * 118.74076 * 53.60235 * 15 14 12 25 25 C 1.53185 * 108.77988 * 306.39551 * 24 15 14 26 26 C 1.53040 * 109.49717 * 175.15833 * 12 11 10 27 27 F 1.39903 * 109.46029 * 301.33740 * 26 12 11 28 28 F 1.39907 * 109.46049 * 61.29660 * 26 12 11 29 29 H 1.08998 * 109.47141 * 60.00482 * 1 2 3 30 30 H 1.09003 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47472 * 300.00271 * 1 2 3 32 32 H 1.08993 * 109.47041 * 239.99783 * 2 1 3 33 33 H 1.09003 * 109.46942 * 119.99960 * 2 1 3 34 34 H 1.07993 * 125.37840 * 179.77231 * 5 4 3 35 35 H 0.96998 * 119.99732 * 0.26944 * 10 8 7 36 36 H 1.09001 * 109.47344 * 299.99324 * 11 10 8 37 37 H 1.08995 * 109.47709 * 60.00018 * 11 10 8 38 38 H 1.09007 * 109.58664 * 305.20112 * 14 12 11 39 39 H 1.09005 * 109.58769 * 65.62615 * 14 12 11 40 40 H 0.97005 * 119.99772 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.58288 * 66.18642 * 24 15 14 42 42 H 1.09000 * 109.58891 * 186.60732 * 24 15 14 43 43 H 1.08999 * 109.49871 * 174.58350 * 25 24 15 44 44 H 1.09000 * 109.50044 * 294.68466 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2954 2.1753 -1.0788 5 6 2.7265 3.3728 -0.6580 6 7 2.7356 3.3923 0.6411 7 6 2.3027 2.1843 1.0937 8 6 2.1584 1.7775 2.5032 9 8 1.7589 0.6618 2.7762 10 7 2.4746 2.6402 3.4893 11 6 2.3369 2.2338 4.8901 12 6 2.7586 3.3892 5.8001 13 1 2.1823 4.2796 5.5483 14 6 4.2512 3.6745 5.6060 15 7 4.6678 4.6951 6.5773 16 6 5.3066 5.8332 6.1627 17 1 5.1306 6.2200 5.1698 18 6 6.1802 6.4898 7.0186 19 7 6.6614 5.8662 8.0731 20 14 6.6728 8.2584 6.6739 21 1 5.9995 8.7275 5.4363 22 1 6.2659 9.1170 7.8152 23 1 8.1450 8.3365 6.4960 24 6 4.3864 4.4712 8.0018 25 6 2.8924 4.1771 8.1691 26 6 2.5015 3.0095 7.2602 27 9 1.1444 2.7177 7.4339 28 9 3.2658 1.8853 7.5909 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0193 4.1921 -1.2978 35 1 2.7933 3.5300 3.2715 36 1 1.2983 1.9722 5.0922 37 1 2.9732 1.3698 5.0820 38 1 4.8221 2.7603 5.7689 39 1 4.4247 4.0406 4.5940 40 1 7.2716 6.3251 8.6714 41 1 4.9684 3.6221 8.3602 42 1 4.6492 5.3630 8.5708 43 1 2.6873 3.9147 9.2070 44 1 2.3149 5.0601 7.8956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046920640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:45 Heat of formation + Delta-G solvation = -122.794474 kcal Electronic energy + Delta-G solvation = -30883.332375 eV Core-core repulsion = 26279.554255 eV Total energy + Delta-G solvation = -4603.778121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.00455 -47.95624 -44.46597 -40.74154 -38.97269 -36.52625 -35.88952 -35.08189 -34.36378 -32.40794 -32.00104 -30.29852 -27.56368 -27.00732 -25.35961 -24.55914 -24.03416 -23.14895 -22.31193 -21.60525 -21.10649 -19.47964 -18.80542 -18.30977 -17.88215 -17.75918 -17.24712 -16.94833 -16.94133 -16.68059 -16.38201 -15.85782 -15.62821 -15.59707 -15.37125 -14.93219 -14.75157 -14.57989 -14.43180 -14.32529 -14.26926 -13.82161 -13.56897 -13.29082 -13.20178 -13.09088 -13.05239 -12.68641 -12.62639 -12.43480 -12.26962 -12.20391 -12.18224 -11.92268 -11.79342 -11.64739 -11.41393 -11.14020 -10.59018 -10.33105 -9.92588 -8.82095 -7.91944 -5.38448 0.01838 1.03834 1.48955 1.52020 1.53440 1.61819 1.95986 2.18209 2.48906 2.76922 3.07092 3.15975 3.21106 3.26091 3.49539 3.54306 3.56976 3.75265 3.89407 4.05018 4.09477 4.20967 4.24261 4.29794 4.46995 4.54552 4.56399 4.60982 4.74934 4.78120 4.81979 4.86907 4.94051 5.04216 5.10354 5.17341 5.21814 5.28159 5.29852 5.57897 5.65548 6.22215 6.32997 6.54984 6.99399 7.07776 7.74738 8.27283 9.16247 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.003263 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.009792 B = 8579.490805 C =10517.725529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C 0.050 3.950 4 O -0.196 6.196 5 C 0.197 3.803 6 N -0.497 5.497 7 C -0.104 4.104 8 C 0.598 3.402 9 O -0.557 6.557 10 N -0.702 5.702 11 C 0.137 3.863 12 C -0.139 4.139 13 H 0.116 0.884 14 C 0.156 3.844 15 N -0.605 5.605 16 C -0.264 4.264 17 H 0.076 0.924 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.290 1.290 23 H -0.296 1.296 24 C 0.177 3.823 25 C -0.168 4.168 26 C 0.302 3.698 27 F -0.205 7.205 28 F -0.208 7.208 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.304 0.696 35 H 0.415 0.585 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.017 0.983 39 H 0.074 0.926 40 H 0.252 0.748 41 H 0.005 0.995 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 -6.725 -16.778 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 C -0.007 4.007 4 O -0.082 6.082 5 C -0.032 4.032 6 N -0.225 5.225 7 C -0.222 4.222 8 C 0.385 3.615 9 O -0.437 6.437 10 N -0.353 5.353 11 C 0.012 3.988 12 C -0.160 4.160 13 H 0.134 0.866 14 C 0.030 3.970 15 N -0.328 5.328 16 C -0.394 4.394 17 H 0.094 0.906 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.796 3.204 21 H -0.187 1.187 22 H -0.217 1.217 23 H -0.223 1.223 24 C 0.051 3.949 25 C -0.208 4.208 26 C 0.265 3.735 27 F -0.186 7.186 28 F -0.189 7.189 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.319 0.681 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.980 -6.960 -16.070 21.218 hybrid contribution 0.692 0.735 0.025 1.010 sum -11.288 -6.224 -16.045 20.581 Atomic orbital electron populations 1.21676 0.92319 1.03859 1.01794 1.20470 0.97643 0.84426 1.05912 1.24093 0.97418 0.96069 0.83161 1.84417 1.63581 1.24649 1.35588 1.29160 0.95985 0.87242 0.90768 1.70745 1.18664 1.21071 1.12068 1.21322 1.13005 0.92929 0.94972 1.16961 0.76997 0.84103 0.83423 1.90758 1.48282 1.20837 1.83825 1.45681 1.66426 1.17961 1.05238 1.21178 1.01920 0.96232 0.79447 1.22761 1.01607 1.00160 0.91514 0.86629 1.20926 0.89820 0.91781 0.94497 1.44328 1.67012 1.19294 1.02134 1.19565 1.18593 1.00375 1.00869 0.90609 1.25809 0.96893 1.02746 0.98702 1.70182 1.33611 1.36672 1.17446 0.85199 0.77030 0.80273 0.77861 1.18725 1.21661 1.22307 1.20584 0.88975 0.99662 0.85680 1.23099 1.01150 0.96731 0.99814 1.20996 0.72254 0.83437 0.96785 1.92971 1.34406 1.94546 1.96692 1.92957 1.76067 1.55814 1.94096 0.91546 0.89350 0.94030 0.87110 0.88099 0.68131 0.74793 0.90391 0.91553 0.96517 0.90724 0.93904 0.97639 0.90635 0.88716 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 71.98 0.71 -1.39 16 2 C -0.05 -0.80 5.93 29.85 0.18 -0.63 16 3 C 0.05 1.06 6.69 25.19 0.17 1.23 16 4 O -0.20 -3.33 10.73 0.37 0.00 -3.32 16 5 C 0.20 2.89 13.19 130.52 1.72 4.61 16 6 N -0.50 -11.59 11.06 -305.14 -3.37 -14.97 16 7 C -0.10 -2.70 6.99 40.40 0.28 -2.42 16 8 C 0.60 18.01 7.81 86.66 0.68 18.68 16 9 O -0.56 -18.58 14.81 -4.06 -0.06 -18.64 16 10 N -0.70 -20.44 5.33 -466.37 -2.48 -22.92 16 11 C 0.14 4.19 4.83 86.38 0.42 4.61 16 12 C -0.14 -4.57 2.03 -10.71 -0.02 -4.59 16 13 H 0.12 3.56 8.14 -2.38 -0.02 3.54 16 14 C 0.16 6.17 5.40 86.36 0.47 6.64 16 15 N -0.61 -28.67 2.99 -699.10 -2.09 -30.76 16 16 C -0.26 -13.63 9.59 84.03 0.81 -12.83 16 17 H 0.08 3.75 7.89 -2.91 -0.02 3.73 16 18 C -0.05 -2.43 4.91 84.86 0.42 -2.01 16 19 N -0.93 -53.11 11.19 21.65 0.24 -52.87 16 20 Si 0.97 42.77 29.59 68.60 2.03 44.80 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 24 C 0.18 8.16 5.11 86.36 0.44 8.60 16 25 C -0.17 -6.06 5.62 30.67 0.17 -5.89 16 26 C 0.30 10.49 1.63 30.62 0.05 10.54 16 27 F -0.21 -6.73 16.41 44.97 0.74 -6.00 16 28 F -0.21 -7.98 15.73 44.97 0.71 -7.27 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 2.10 6.48 -2.39 -0.02 2.09 16 34 H 0.30 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.42 11.61 7.42 -92.71 -0.69 10.92 16 36 H 0.08 2.37 7.63 -2.39 -0.02 2.35 16 37 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 38 H 0.02 0.72 7.92 -2.38 -0.02 0.70 16 39 H 0.07 2.81 7.13 -2.38 -0.02 2.79 16 40 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 41 H 0.01 0.28 7.92 -2.38 -0.02 0.26 16 42 H 0.08 3.88 6.04 -2.39 -0.01 3.87 16 43 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -67.71 368.54 2.55 -65.15 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.36 Total: 21.65 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: 6.49 Total: 25.15 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -7.71 Total: -121.52 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 9 Polarization: -14.71 SS G_CDS: 1.45 Total: -13.27 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -67.71 2.55 -65.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046920640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.642 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds