Wall clock time and date at job start Wed Apr 1 2020 01:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30620 * 125.42089 * 2 1 4 4 C 1.33688 * 108.99271 * 180.16927 * 3 2 1 5 5 C 1.50705 * 126.26929 * 179.82605 * 4 3 2 6 6 C 1.36339 * 107.45790 * 359.56414 * 4 3 2 7 7 C 1.46719 * 126.64966 * 180.27781 * 6 4 3 8 8 O 1.21690 * 119.99524 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00457 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00077 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47105 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.50087 * 54.99497 * 11 10 9 13 13 C 1.53193 * 109.49833 * 294.93230 * 11 10 9 14 14 N 1.46931 * 108.77621 * 185.44350 * 13 11 10 15 15 C 1.36929 * 120.60905 * 233.53325 * 14 13 11 16 16 H 1.08004 * 120.00206 * 152.77583 * 15 14 13 17 17 C 1.38810 * 119.99968 * 332.78198 * 15 14 13 18 18 N 1.31621 * 119.99922 * 159.74012 * 17 15 14 19 19 Si 1.86801 * 120.00068 * 339.74000 * 17 15 14 20 20 H 1.48500 * 109.47137 * 94.89939 * 19 17 15 21 21 H 1.48506 * 109.46980 * 214.89916 * 19 17 15 22 22 H 1.48499 * 109.47077 * 334.89997 * 19 17 15 23 23 C 1.46933 * 118.76081 * 53.55534 * 14 13 11 24 24 C 1.53185 * 108.77593 * 306.41549 * 23 14 13 25 25 C 1.53037 * 109.49897 * 175.06197 * 11 10 9 26 26 F 1.39892 * 109.45960 * 301.33575 * 25 11 10 27 27 F 1.39904 * 109.46038 * 61.31143 * 25 11 10 28 28 O 1.33661 * 125.42380 * 179.68581 * 2 1 3 29 29 H 1.08993 * 109.46982 * 270.31159 * 1 2 3 30 30 H 1.08994 * 109.47369 * 30.31786 * 1 2 3 31 31 H 1.09001 * 109.46755 * 150.31207 * 1 2 3 32 32 H 1.09002 * 109.46700 * 269.68741 * 5 4 3 33 33 H 1.09001 * 109.46986 * 149.69292 * 5 4 3 34 34 H 1.08990 * 109.47379 * 29.68915 * 5 4 3 35 35 H 0.96998 * 119.99720 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.46983 * 299.99596 * 10 9 7 37 37 H 1.08994 * 109.47300 * 59.99863 * 10 9 7 38 38 H 1.09006 * 109.58528 * 305.20430 * 13 11 10 39 39 H 1.09010 * 109.58614 * 65.62227 * 13 11 10 40 40 H 0.97005 * 120.00174 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.58255 * 186.62206 * 23 14 13 42 42 H 1.09008 * 109.58442 * 66.20280 * 23 14 13 43 43 H 1.09005 * 109.49364 * 294.68261 * 24 23 14 44 44 H 1.08999 * 109.52796 * 174.60422 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6864 -0.0037 5 6 4.7451 1.5997 -0.0087 6 6 3.5709 -0.6768 0.0038 7 6 4.7636 -1.5312 0.0088 8 8 5.8719 -1.0288 0.0068 9 7 4.6318 -2.8725 0.0156 10 6 5.8227 -3.7256 0.0212 11 6 5.3973 -5.1952 0.0278 12 1 4.7310 -5.3849 -0.8138 13 6 4.6688 -5.5108 1.3379 14 7 4.3834 -6.9514 1.3852 15 6 3.1098 -7.4030 1.6060 16 1 2.8042 -8.3656 1.2233 17 6 2.2113 -6.6236 2.3215 18 7 0.9176 -6.8370 2.2063 19 14 2.8382 -5.2718 3.4481 20 1 2.8364 -3.9786 2.7182 21 1 1.9553 -5.1700 4.6379 22 1 4.2212 -5.5923 3.8839 23 6 5.4904 -7.8981 1.1917 24 6 6.2090 -7.5555 -0.1170 25 6 6.6360 -6.0861 -0.0906 26 9 7.3204 -5.7783 -1.2712 27 9 7.4758 -5.8649 1.0063 28 8 2.2818 -1.0892 0.0060 29 1 -0.3633 0.0056 1.0276 30 1 -0.3634 0.8871 -0.5187 31 1 -0.3633 -0.8928 -0.5090 32 1 5.0341 1.8141 -1.0376 33 1 5.5735 1.1147 0.5077 34 1 4.4949 2.5305 0.4999 35 1 3.7483 -3.2729 0.0168 36 1 6.4182 -3.5241 -0.8693 37 1 6.4164 -3.5149 0.9106 38 1 5.3004 -5.2359 2.1826 39 1 3.7343 -4.9511 1.3803 40 1 0.2897 -6.2921 2.7060 41 1 5.0976 -8.9134 1.1381 42 1 6.1894 -7.8180 2.0243 43 1 5.5348 -7.7234 -0.9570 44 1 7.0898 -8.1884 -0.2255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046927278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:09 Heat of formation + Delta-G solvation = -93.808399 kcal Electronic energy + Delta-G solvation = -31491.994684 eV Core-core repulsion = 26889.473494 eV Total energy + Delta-G solvation = -4602.521190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.76573 -46.71485 -43.56892 -39.66863 -37.76942 -35.68782 -34.95622 -32.99463 -32.80460 -31.48873 -30.61545 -29.51840 -27.90072 -25.78526 -25.24007 -23.19455 -22.24461 -21.90532 -21.29718 -20.66227 -19.93716 -18.41037 -17.25853 -17.19233 -17.15021 -16.60386 -16.03815 -15.78856 -15.55178 -15.34226 -15.03763 -14.49442 -14.34904 -14.24939 -13.75794 -13.55872 -13.47169 -13.28894 -13.14306 -13.12578 -13.08151 -12.96855 -12.87060 -12.57374 -12.30206 -12.16345 -12.02242 -11.83280 -11.77414 -11.13142 -11.08740 -11.01038 -10.80856 -10.43290 -10.30015 -10.22395 -9.96583 -9.65136 -9.29533 -8.87702 -8.84168 -7.27451 -6.14387 -3.53691 0.68380 2.23219 2.25718 2.97775 3.01817 3.14443 3.35097 3.37703 3.70639 3.98078 4.30243 4.33257 4.39659 4.54882 4.58424 4.65468 4.76368 5.02720 5.08242 5.10418 5.14137 5.20107 5.26132 5.41812 5.45434 5.48569 5.53160 5.62651 5.72327 5.73937 5.80315 5.83362 5.87720 6.03909 6.12316 6.15599 6.23022 6.29752 6.36006 6.57419 7.22058 7.48779 7.69755 7.93569 8.11964 8.68992 9.49100 9.82860 11.00544 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.004533 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.869950 B = 6175.215867 C = 8164.677295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.224 3.776 3 N -0.493 5.493 4 C 0.082 3.918 5 C -0.080 4.080 6 C -0.121 4.121 7 C 0.611 3.389 8 O -0.517 6.517 9 N -0.711 5.711 10 C 0.123 3.877 11 C -0.159 4.159 12 H 0.110 0.890 13 C 0.133 3.867 14 N -0.604 5.604 15 C -0.268 4.268 16 H 0.092 0.908 17 C 0.030 3.970 18 N -0.900 5.900 19 Si 0.872 3.128 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.267 1.267 23 C 0.147 3.853 24 C -0.172 4.172 25 C 0.303 3.697 26 F -0.208 7.208 27 F -0.198 7.198 28 O -0.184 6.184 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.265 0.735 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.094 0.906 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 9.775 -6.164 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.019 3.981 3 N -0.224 5.224 4 C -0.042 4.042 5 C -0.137 4.137 6 C -0.176 4.176 7 C 0.396 3.604 8 O -0.395 6.395 9 N -0.363 5.363 10 C -0.001 4.001 11 C -0.180 4.180 12 H 0.128 0.872 13 C 0.007 3.993 14 N -0.326 5.326 15 C -0.395 4.395 16 H 0.109 0.891 17 C -0.170 4.170 18 N -0.542 5.542 19 Si 0.702 3.298 20 H -0.216 1.216 21 H -0.227 1.227 22 H -0.192 1.192 23 C 0.021 3.979 24 C -0.212 4.212 25 C 0.266 3.734 26 F -0.189 7.189 27 F -0.180 7.180 28 O -0.071 6.071 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.450 10.648 -6.086 13.047 hybrid contribution 0.088 -0.059 0.657 0.665 sum 4.538 10.589 -5.429 12.736 Atomic orbital electron populations 1.20424 0.80633 1.05671 1.05382 1.26607 0.96775 0.78539 0.96224 1.70354 1.01535 1.29907 1.20569 1.22050 0.93526 0.91145 0.97486 1.20386 0.92218 0.97382 1.03684 1.22837 0.82473 0.95143 1.17117 1.16254 0.85526 0.81485 0.77100 1.90845 1.23637 1.73889 1.51127 1.45880 1.11133 1.05364 1.73877 1.21428 0.87045 0.87991 1.03606 1.23042 0.96703 0.93012 1.05263 0.87165 1.21471 0.98605 0.87072 0.92191 1.44394 1.05446 0.99115 1.83672 1.18924 0.84776 1.05992 1.29849 0.89089 1.25258 0.95138 0.98311 0.98307 1.69816 1.00584 1.41303 1.42494 0.87135 0.79086 0.81751 0.81872 1.21586 1.22671 1.19178 1.20952 0.89726 0.94949 0.92276 1.23062 1.02493 0.91683 1.03936 1.20922 0.83828 0.97522 0.71137 1.92976 1.82310 1.94669 1.48901 1.92976 1.74038 1.96092 1.54852 1.84499 1.16099 1.37263 1.69217 0.88220 0.87708 0.88560 0.89992 0.88611 0.90493 0.75332 0.90122 0.90212 0.94077 0.89993 0.92530 0.90194 0.94536 0.88707 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.13 16 2 C 0.22 2.90 8.32 -12.79 -0.11 2.79 16 3 N -0.49 -7.02 11.26 -7.07 -0.08 -7.10 16 4 C 0.08 1.21 7.16 -82.47 -0.59 0.62 16 5 C -0.08 -0.95 9.87 36.01 0.36 -0.59 16 6 C -0.12 -1.90 7.18 -36.84 -0.26 -2.16 16 7 C 0.61 10.01 7.79 -12.84 -0.10 9.91 16 8 O -0.52 -9.06 14.79 5.20 0.08 -8.98 16 9 N -0.71 -11.29 5.33 -61.61 -0.33 -11.61 16 10 C 0.12 1.93 4.83 -4.04 -0.02 1.91 16 11 C -0.16 -2.61 2.03 -90.50 -0.18 -2.80 16 12 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 13 C 0.13 2.66 3.07 -3.71 -0.01 2.65 16 14 N -0.60 -13.05 2.77 -172.31 -0.48 -13.52 16 15 C -0.27 -6.85 10.04 -15.06 -0.15 -7.01 16 16 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 17 C 0.03 0.80 5.24 -17.43 -0.09 0.71 16 18 N -0.90 -25.71 13.97 55.49 0.78 -24.94 16 19 Si 0.87 21.08 24.34 -169.99 -4.14 16.94 16 20 H -0.29 -6.67 6.70 56.52 0.38 -6.29 16 21 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.27 -6.45 6.45 56.52 0.36 -6.09 16 23 C 0.15 2.61 6.31 -3.71 -0.02 2.59 16 24 C -0.17 -2.56 5.62 -26.61 -0.15 -2.71 16 25 C 0.30 4.82 1.63 -26.69 -0.04 4.77 16 26 F -0.21 -3.23 16.41 2.25 0.04 -3.19 16 27 F -0.20 -3.38 15.73 2.25 0.04 -3.35 16 28 O -0.18 -2.79 10.57 4.41 0.05 -2.74 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.22 6.47 -51.93 -0.34 0.88 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.41 6.48 7.49 -40.82 -0.31 6.17 16 36 H 0.08 1.21 7.63 -51.93 -0.40 0.82 16 37 H 0.08 1.30 7.97 -51.93 -0.41 0.89 16 38 H 0.04 0.86 6.76 -51.93 -0.35 0.51 16 39 H 0.08 1.76 3.71 -51.92 -0.19 1.57 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.08 1.36 7.93 -51.93 -0.41 0.95 16 42 H 0.04 0.65 7.92 -51.92 -0.41 0.24 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -31.14 362.42 -5.41 -36.55 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.82 Total: 5.94 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -1.00 Total: 10.55 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.11 Total: -57.18 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.12 Total: -11.73 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.07 Total: -6.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.14 -5.41 -36.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046927278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.260 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds