Wall clock time and date at job start Wed Apr 1 2020 01:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30122 * 126.70551 * 2 1 4 4 O 1.20887 * 111.98776 * 179.97438 * 3 2 1 5 5 C 1.34643 * 111.46308 * 359.97438 * 4 3 2 6 6 C 1.47512 * 126.94227 * 180.02562 * 5 4 3 7 7 O 1.21592 * 120.00103 * 179.97438 * 6 5 4 8 8 N 1.34775 * 120.00058 * 359.97277 * 6 5 4 9 9 C 1.46503 * 119.99900 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47094 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.50101 * 54.99767 * 10 9 8 12 12 C 1.53199 * 109.49665 * 294.93765 * 10 9 8 13 13 N 1.46935 * 108.76750 * 185.44880 * 12 10 9 14 14 C 1.36944 * 120.59978 * 233.53110 * 13 12 10 15 15 H 1.08001 * 119.99840 * 27.68792 * 14 13 12 16 16 C 1.38812 * 119.99720 * 207.69610 * 14 13 12 17 17 N 1.31612 * 120.00131 * 17.34897 * 16 14 13 18 18 Si 1.86807 * 119.99626 * 197.35374 * 16 14 13 19 19 H 1.48495 * 109.47056 * 89.99687 * 18 16 14 20 20 H 1.48503 * 109.46990 * 209.99706 * 18 16 14 21 21 H 1.48495 * 109.47117 * 329.99726 * 18 16 14 22 22 C 1.46924 * 118.77029 * 53.55620 * 13 12 10 23 23 C 1.53193 * 108.76974 * 306.40861 * 22 13 12 24 24 C 1.53038 * 109.31621 * 54.63980 * 23 22 13 25 25 F 1.39892 * 109.46384 * 178.61021 * 24 23 22 26 26 F 1.39901 * 109.44986 * 58.64031 * 24 23 22 27 27 C 1.36825 * 106.11635 * 0.02562 * 5 4 3 28 28 C 1.50690 * 128.08194 * 179.97438 * 27 5 4 29 29 H 1.08998 * 109.46968 * 90.02956 * 1 2 3 30 30 H 1.09005 * 109.46892 * 210.02178 * 1 2 3 31 31 H 1.08999 * 109.47250 * 330.02783 * 1 2 3 32 32 H 0.96999 * 120.00028 * 0.02562 * 8 6 5 33 33 H 1.08995 * 109.47396 * 299.99966 * 9 8 6 34 34 H 1.09005 * 109.47162 * 60.00133 * 9 8 6 35 35 H 1.08998 * 109.58685 * 305.19928 * 12 10 9 36 36 H 1.08999 * 109.58848 * 65.62301 * 12 10 9 37 37 H 0.97004 * 119.99481 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.58511 * 186.62398 * 22 13 12 39 39 H 1.08998 * 109.58552 * 66.19399 * 22 13 12 40 40 H 1.08999 * 109.50274 * 294.68278 * 23 22 13 41 41 H 1.09005 * 109.51845 * 174.60424 * 23 22 13 42 42 H 1.09001 * 109.47685 * 89.99683 * 28 27 5 43 43 H 1.08998 * 109.47677 * 210.00512 * 28 27 5 44 44 H 1.09005 * 109.47373 * 330.00221 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0432 0.0000 4 8 3.4539 0.7361 0.0005 5 6 3.6121 -0.6010 0.0015 6 6 4.8870 -1.3430 0.0028 7 8 4.8829 -2.5589 0.0041 8 7 6.0565 -0.6731 0.0027 9 6 7.3227 -1.4100 0.0034 10 6 8.4891 -0.4198 0.0037 11 1 8.3847 0.2652 0.8450 12 6 8.4854 0.3749 -1.3061 13 7 9.6830 1.2253 -1.3464 14 6 9.5742 2.5725 -1.5669 15 1 8.6748 3.0960 -1.2783 16 6 10.6200 3.2650 -2.1616 17 7 11.5548 2.6099 -2.8167 18 14 10.7005 5.1268 -2.0319 19 1 11.4679 5.5058 -0.8184 20 1 11.3733 5.6782 -3.2354 21 1 9.3241 5.6765 -1.9388 22 6 10.9990 0.6033 -1.1463 23 6 10.9739 -0.1933 0.1619 24 6 9.8087 -1.1849 0.1286 25 9 9.8020 -1.9361 1.3087 26 9 9.9567 -2.0409 -0.9680 27 6 2.3513 -1.1326 0.0010 28 6 1.9557 -2.5866 0.0011 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 6.0599 0.2969 0.0020 33 1 7.3782 -2.0363 0.8938 34 1 7.3785 -2.0375 -0.8862 35 1 8.4979 -0.3134 -2.1511 36 1 7.5923 0.9980 -1.3529 37 1 12.2858 3.0939 -3.2319 38 1 11.7640 1.3776 -1.0881 39 1 11.2167 -0.0667 -1.9781 40 1 10.8463 0.4899 1.0016 41 1 11.9116 -0.7375 0.2750 42 1 1.8598 -2.9371 1.0288 43 1 1.0019 -2.7038 -0.5133 44 1 2.7194 -3.1711 -0.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046948087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:04 Heat of formation + Delta-G solvation = -62.271921 kcal Electronic energy + Delta-G solvation = -30797.954452 eV Core-core repulsion = 26196.800786 eV Total energy + Delta-G solvation = -4601.153666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.57168 -46.52113 -45.21173 -39.81690 -37.45549 -35.83553 -35.04275 -33.05494 -32.62788 -30.98596 -30.25856 -29.14791 -28.47015 -26.02926 -25.21124 -23.50354 -22.37257 -22.03608 -21.41178 -20.38836 -19.58423 -18.39621 -18.02624 -17.12845 -16.84657 -16.50487 -16.12174 -15.57564 -15.45279 -15.43072 -14.86657 -14.36934 -14.17167 -13.90112 -13.87337 -13.59756 -13.32657 -13.31663 -13.28545 -13.15716 -13.05064 -12.90143 -12.83104 -12.67373 -12.25538 -11.73420 -11.66707 -11.60425 -11.36082 -11.25201 -10.85902 -10.67309 -10.55010 -10.43342 -10.17487 -10.08423 -9.94385 -9.72928 -9.71244 -9.19828 -8.62726 -6.92650 -5.95126 -3.39757 0.59951 1.77793 2.42320 2.82673 3.04263 3.30388 3.38176 3.39008 3.77797 4.11477 4.22318 4.35110 4.49730 4.57727 4.62875 4.66229 4.84919 4.96192 5.11391 5.15823 5.24383 5.24404 5.31539 5.35598 5.36290 5.47597 5.53610 5.56778 5.64361 5.83756 5.89274 5.96520 6.10440 6.17437 6.24150 6.29193 6.39832 6.64799 7.08107 7.17593 7.42940 7.65154 7.78749 7.91905 8.25039 9.01522 9.63750 10.18424 11.13992 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.003247 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.318503 B = 8620.183017 C =10696.263493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.007 3.993 3 N -0.341 5.341 4 O 0.120 5.880 5 C -0.089 4.089 6 C 0.606 3.394 7 O -0.513 6.513 8 N -0.705 5.705 9 C 0.124 3.876 10 C -0.157 4.157 11 H 0.104 0.896 12 C 0.151 3.849 13 N -0.590 5.590 14 C -0.263 4.263 15 H 0.071 0.929 16 C 0.007 3.993 17 N -0.899 5.899 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.277 1.277 22 C 0.170 3.830 23 C -0.179 4.179 24 C 0.301 3.699 25 F -0.213 7.213 26 F -0.199 7.199 27 C -0.119 4.119 28 C -0.085 4.085 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.411 0.589 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.257 0.743 38 H 0.101 0.899 39 H 0.033 0.967 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 -8.040 7.148 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 N -0.042 5.042 4 O 0.047 5.953 5 C -0.155 4.155 6 C 0.389 3.611 7 O -0.389 6.389 8 N -0.357 5.357 9 C 0.001 3.999 10 C -0.178 4.178 11 H 0.123 0.877 12 C 0.024 3.976 13 N -0.311 5.311 14 C -0.392 4.392 15 H 0.088 0.912 16 C -0.192 4.192 17 N -0.542 5.542 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.203 1.203 22 C 0.043 3.957 23 C -0.219 4.219 24 C 0.265 3.735 25 F -0.194 7.194 26 F -0.180 7.180 27 C -0.124 4.124 28 C -0.142 4.142 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.247 0.753 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.637 -7.552 7.027 18.733 hybrid contribution 0.159 0.583 0.076 0.609 sum -15.478 -6.969 7.102 18.401 Atomic orbital electron populations 1.20189 0.85326 1.04022 1.03661 1.23527 0.99262 0.88094 1.04203 1.73745 0.89312 1.24199 1.16964 1.84988 1.21297 1.21863 1.67144 1.23977 0.96958 0.83976 1.10558 1.16441 0.80960 0.86153 0.77516 1.90847 1.85967 1.11751 1.50307 1.45851 1.05194 1.11248 1.73372 1.21457 0.80742 0.94154 1.03578 1.23002 0.91437 0.98012 1.05396 0.87747 1.20937 0.92251 0.93173 0.91233 1.44096 0.99968 1.04327 1.82740 1.19188 1.03257 0.82451 1.34264 0.91160 1.25077 0.99044 0.98342 0.96758 1.70020 1.14457 1.34804 1.34950 0.86250 0.77923 0.85117 0.77236 1.21274 1.21666 1.20264 1.20854 0.89550 0.95709 0.89538 1.23275 0.95429 0.97906 1.05259 1.21006 0.98416 0.83210 0.70916 1.92958 1.97716 1.79466 1.49269 1.92970 1.96943 1.73168 1.54886 1.21464 0.90246 0.98563 1.02133 1.20324 1.02630 0.87874 1.03365 0.89906 0.89790 0.90235 0.75267 0.90395 0.90025 0.94843 0.91481 0.93314 0.88069 0.94921 0.89529 0.90488 0.90215 0.90831 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.39 36.01 0.37 -0.12 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 N -0.34 -4.41 12.04 33.52 0.40 -4.00 16 4 O 0.12 1.55 11.04 15.55 0.17 1.72 16 5 C -0.09 -1.11 7.29 -36.31 -0.26 -1.38 16 6 C 0.61 8.18 7.82 -12.48 -0.10 8.08 16 7 O -0.51 -7.95 15.11 5.28 0.08 -7.87 16 8 N -0.71 -9.00 5.33 -61.36 -0.33 -9.33 16 9 C 0.12 1.75 4.83 -4.04 -0.02 1.73 16 10 C -0.16 -2.45 2.03 -90.49 -0.18 -2.64 16 11 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 12 C 0.15 2.83 5.40 -3.70 -0.02 2.81 16 13 N -0.59 -13.44 3.00 -172.31 -0.52 -13.96 16 14 C -0.26 -6.63 9.58 -15.06 -0.14 -6.77 16 15 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 16 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 17 N -0.90 -24.66 11.19 55.49 0.62 -24.04 16 18 Si 0.91 20.55 29.59 -169.99 -5.03 15.52 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.17 3.74 5.11 -3.71 -0.02 3.72 16 23 C -0.18 -3.18 5.62 -26.61 -0.15 -3.33 16 24 C 0.30 5.12 1.63 -26.69 -0.04 5.08 16 25 F -0.21 -3.52 16.41 2.25 0.04 -3.48 16 26 F -0.20 -3.66 15.73 2.25 0.04 -3.63 16 27 C -0.12 -1.32 6.36 -103.99 -0.66 -1.98 16 28 C -0.09 -0.74 9.86 36.00 0.35 -0.38 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.41 4.76 7.53 -40.82 -0.31 4.45 16 33 H 0.08 1.10 7.63 -51.93 -0.40 0.70 16 34 H 0.08 1.22 7.97 -51.93 -0.41 0.81 16 35 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 36 H 0.07 1.17 7.14 -51.93 -0.37 0.80 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.10 2.48 6.04 -51.93 -0.31 2.17 16 39 H 0.03 0.78 7.92 -51.93 -0.41 0.36 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.94 6.73 -51.93 -0.35 0.59 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -29.58 369.10 -6.43 -36.01 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.90 Total: 3.11 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.56 Total: 4.39 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.18 Total: -51.33 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: 0.25 Total: -6.15 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.58 -6.43 -36.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046948087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.265 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds