Wall clock time and date at job start Wed Apr 1 2020 01:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30009 * 127.33763 * 2 1 4 4 O 1.20657 * 112.29888 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15953 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.83099 * 180.02562 * 5 4 3 7 7 F 1.39903 * 109.47089 * 30.00674 * 6 5 4 8 8 F 1.39897 * 109.47196 * 150.00769 * 6 5 4 9 9 C 1.37358 * 106.34292 * 0.02562 * 5 4 3 10 10 C 1.47397 * 128.56962 * 180.25204 * 9 5 4 11 11 O 1.21609 * 120.00052 * 269.68313 * 10 9 5 12 12 N 1.34781 * 119.99829 * 89.67581 * 10 9 5 13 13 C 1.46498 * 120.00044 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.21061 * 34.99456 * 13 12 10 15 15 C 1.50120 * 110.24958 * 156.93406 * 13 12 10 16 16 C 1.54637 * 110.92758 * 216.54268 * 15 13 12 17 17 C 1.54899 * 110.18779 * 321.33596 * 16 15 13 18 18 N 1.43431 * 116.08183 * 318.52593 * 17 16 15 19 19 C 1.36938 * 120.54233 * 271.59313 * 18 17 16 20 20 H 1.08001 * 119.99346 * 336.68157 * 19 18 17 21 21 C 1.38807 * 120.00267 * 156.68310 * 19 18 17 22 22 N 1.31623 * 120.00040 * 340.40782 * 21 19 18 23 23 Si 1.86798 * 120.00074 * 160.40523 * 21 19 18 24 24 H 1.48504 * 109.47148 * 60.00152 * 23 21 19 25 25 H 1.48497 * 109.47308 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47234 * 300.00275 * 23 21 19 27 27 C 1.50169 * 118.92231 * 91.56630 * 18 17 16 28 28 C 1.46233 * 107.53797 * 289.59215 * 27 18 17 29 29 H 1.08994 * 109.47701 * 270.05039 * 1 2 3 30 30 H 1.09002 * 109.46649 * 30.04743 * 1 2 3 31 31 H 1.08999 * 109.47557 * 150.04327 * 1 2 3 32 32 H 1.09004 * 109.47394 * 270.00618 * 6 5 4 33 33 H 0.97000 * 119.99666 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.20883 * 336.99468 * 15 13 12 35 35 H 1.09000 * 109.20731 * 96.31076 * 15 13 12 36 36 H 1.09001 * 109.42566 * 201.05699 * 16 15 13 37 37 H 1.08999 * 109.13378 * 81.43241 * 16 15 13 38 38 H 1.09004 * 108.15859 * 196.81207 * 17 16 15 39 39 H 1.08994 * 108.00138 * 80.12450 * 17 16 15 40 40 H 0.97001 * 119.99930 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.84384 * 170.08142 * 27 18 17 42 42 H 1.09002 * 109.89906 * 49.13546 * 27 18 17 43 43 H 1.09003 * 108.52113 * 297.17174 * 28 27 18 44 44 H 1.08997 * 108.40752 * 179.56059 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0005 5 6 3.6493 -0.6009 0.0015 6 6 4.9711 -1.3249 0.0028 7 9 5.9283 -0.5466 0.6626 8 9 4.8309 -2.5504 0.6629 9 6 2.3991 -1.1697 0.0010 10 6 2.0398 -2.5993 0.0067 11 8 1.8886 -3.1924 -1.0441 12 7 1.8791 -3.2490 1.1766 13 6 1.5226 -4.6699 1.1823 14 1 1.9976 -5.1807 0.3448 15 6 1.9350 -5.3038 2.4792 16 6 2.4346 -6.7496 2.2529 17 6 1.5683 -7.4526 1.1784 18 7 0.1556 -7.2165 1.2539 19 6 -0.6438 -8.0182 2.0243 20 1 -0.3255 -9.0202 2.2715 21 6 -1.8630 -7.5431 2.4875 22 7 -2.0906 -6.2474 2.5315 23 14 -3.1808 -8.7424 3.0482 24 1 -2.6613 -9.5568 4.1762 25 1 -4.3795 -7.9878 3.4942 26 1 -3.5489 -9.6361 1.9208 27 6 -0.4327 -6.0754 0.4748 28 6 0.0079 -4.8344 1.1105 29 1 -0.3634 0.0009 1.0276 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3634 -0.8903 -0.5131 32 1 5.2905 -1.5000 -1.0245 33 1 1.9994 -2.7757 2.0147 34 1 2.7338 -4.7139 2.9286 35 1 1.0808 -5.3242 3.1559 36 1 2.3716 -7.3055 3.1884 37 1 3.4718 -6.7211 1.9190 38 1 1.7377 -8.5267 1.2548 39 1 1.9156 -7.1252 0.1986 40 1 -2.9425 -5.9154 2.8555 41 1 -1.5208 -6.1356 0.4951 42 1 -0.0796 -6.1089 -0.5559 43 1 -0.3921 -4.8036 2.1240 44 1 -0.4054 -3.9954 0.5507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052481397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:34 Heat of formation + Delta-G solvation = -42.089164 kcal Electronic energy + Delta-G solvation = -31580.551213 eV Core-core repulsion = 26980.272737 eV Total energy + Delta-G solvation = -4600.278476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.54170 -47.56128 -45.29767 -39.78454 -37.70724 -34.92293 -34.66213 -33.34265 -32.49547 -30.97904 -30.47809 -29.08834 -27.42510 -26.20870 -24.94817 -23.49248 -23.12721 -21.25381 -20.53829 -20.06925 -19.32512 -18.62150 -18.39503 -17.62030 -17.49124 -17.22720 -16.71590 -16.04675 -15.61621 -14.94281 -14.61343 -14.34161 -14.20942 -13.91255 -13.85318 -13.78327 -13.71673 -13.61742 -13.41128 -13.20004 -13.06427 -12.83847 -12.12220 -11.97572 -11.86460 -11.66243 -11.44120 -11.24058 -10.91532 -10.75925 -10.46390 -10.28488 -10.22651 -10.17088 -10.05601 -9.87014 -9.78704 -9.55118 -9.30274 -8.75079 -8.38177 -6.73107 -5.80746 -3.19294 0.65236 1.52433 1.96124 2.39148 3.12702 3.28143 3.37896 3.43921 3.46363 3.55026 3.79951 4.18102 4.27777 4.35141 4.50211 4.75085 4.80080 5.19237 5.25344 5.31676 5.36718 5.38646 5.58238 5.63018 5.74380 5.78367 6.09641 6.20255 6.26944 6.41664 6.47900 6.61154 6.83271 6.86881 6.89847 7.00706 7.09283 7.18778 7.53440 7.64977 7.71859 7.72948 7.91896 8.22693 8.41666 9.17880 9.85846 10.39151 11.26648 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.003196 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.525472 B = 8758.697286 C = 9796.836497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.058 3.942 3 N -0.341 5.341 4 O 0.124 5.876 5 C -0.083 4.083 6 C 0.365 3.635 7 F -0.183 7.183 8 F -0.172 7.172 9 C -0.188 4.188 10 C 0.589 3.411 11 O -0.519 6.519 12 N -0.697 5.697 13 C 0.147 3.853 14 H 0.087 0.913 15 C -0.113 4.113 16 C -0.139 4.139 17 C 0.154 3.846 18 N -0.588 5.588 19 C -0.247 4.247 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.169 3.831 28 C -0.132 4.132 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.397 0.603 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.252 0.748 41 H 0.092 0.908 42 H 0.010 0.990 43 H 0.104 0.896 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.673 12.801 -3.820 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 N -0.044 5.044 4 O 0.057 5.943 5 C -0.147 4.147 6 C 0.310 3.690 7 F -0.164 7.164 8 F -0.153 7.153 9 C -0.196 4.196 10 C 0.371 3.629 11 O -0.395 6.395 12 N -0.346 5.346 13 C 0.044 3.956 14 H 0.105 0.895 15 C -0.151 4.151 16 C -0.181 4.181 17 C 0.025 3.975 18 N -0.309 5.309 19 C -0.377 4.377 20 H 0.085 0.915 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.212 1.212 27 C 0.045 3.955 28 C -0.172 4.172 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.166 0.834 33 H 0.231 0.769 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.028 0.972 43 H 0.122 0.878 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.184 13.708 -4.485 18.251 hybrid contribution -0.669 -0.908 1.050 1.541 sum 10.515 12.799 -3.434 16.917 Atomic orbital electron populations 1.20329 0.84227 1.04866 1.04489 1.24906 0.99052 0.85739 1.00609 1.73621 0.88929 1.23078 1.18739 1.84596 1.21673 1.20704 1.67322 1.25056 0.97061 0.85888 1.06742 1.19538 0.79802 0.74870 0.94749 1.93083 1.64622 1.75039 1.83693 1.93146 1.95658 1.42863 1.83588 1.22338 0.91745 0.96727 1.08757 1.16752 0.77959 0.83198 0.84958 1.90861 1.50418 1.66950 1.31309 1.46221 1.68690 1.12497 1.07209 1.20617 0.98090 0.77341 0.99541 0.89458 1.21653 1.00942 0.96087 0.96422 1.22793 0.98121 0.95395 1.01772 1.20442 0.85304 0.97059 0.94742 1.44251 1.00434 1.34480 1.51774 1.19186 0.99337 0.93888 1.25274 0.91533 1.24864 0.99854 0.95459 0.99345 1.69945 1.23712 1.10903 1.50158 0.86410 0.81614 0.80586 0.78396 1.21117 1.21787 1.21209 1.20093 1.00236 0.85277 0.89928 1.21354 0.91687 0.98617 1.05501 0.89029 0.89596 0.89007 0.83383 0.76943 0.93908 0.90025 0.92559 0.93609 0.94790 0.95249 0.93770 0.89027 0.97222 0.87817 0.95212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.49 36.01 0.38 -0.44 16 2 C 0.06 0.71 7.59 -79.77 -0.61 0.10 16 3 N -0.34 -4.23 12.01 34.78 0.42 -3.81 16 4 O 0.12 1.42 11.06 18.66 0.21 1.63 16 5 C -0.08 -0.91 7.13 -34.63 -0.25 -1.16 16 6 C 0.37 3.21 5.81 36.01 0.21 3.42 16 7 F -0.18 -1.69 17.32 2.25 0.04 -1.65 16 8 F -0.17 -1.92 16.10 2.25 0.04 -1.89 16 9 C -0.19 -2.43 6.19 -102.89 -0.64 -3.07 16 10 C 0.59 9.09 6.51 -12.53 -0.08 9.01 16 11 O -0.52 -9.84 16.79 5.27 0.09 -9.75 16 12 N -0.70 -10.44 4.97 -56.53 -0.28 -10.72 16 13 C 0.15 2.61 2.19 -69.60 -0.15 2.45 16 14 H 0.09 1.71 5.77 -51.93 -0.30 1.41 16 15 C -0.11 -1.98 5.29 -27.30 -0.14 -2.12 16 16 C -0.14 -2.49 6.40 -24.87 -0.16 -2.65 16 17 C 0.15 3.14 5.18 -4.66 -0.02 3.11 16 18 N -0.59 -13.99 2.60 -175.09 -0.46 -14.44 16 19 C -0.25 -6.46 9.63 -15.06 -0.14 -6.61 16 20 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 22 N -0.90 -23.96 9.43 55.49 0.52 -23.43 16 23 Si 0.90 21.01 29.60 -169.99 -5.03 15.98 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.17 3.90 5.24 -5.21 -0.03 3.87 16 28 C -0.13 -2.74 4.74 -30.19 -0.14 -2.88 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.15 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 5.10 8.47 -40.82 -0.35 4.75 16 34 H 0.04 0.65 7.83 -51.93 -0.41 0.24 16 35 H 0.08 1.67 6.84 -51.93 -0.36 1.32 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.69 7.99 -51.93 -0.41 0.27 16 39 H 0.03 0.58 6.88 -51.93 -0.36 0.22 16 40 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 41 H 0.09 2.36 6.05 -51.93 -0.31 2.05 16 42 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 43 H 0.10 2.42 5.30 -51.93 -0.28 2.14 16 44 H 0.03 0.61 7.96 -51.93 -0.41 0.19 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -29.60 364.78 -6.51 -36.11 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.69 Total: 3.45 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.86 Total: 3.04 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.20 Total: -52.40 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.29 Total: -8.13 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.08 Total: -3.54 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.60 -6.51 -36.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052481397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.976 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds