Wall clock time and date at job start Wed Apr 1 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30009 * 127.33763 * 2 1 4 4 O 1.20657 * 112.29888 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15953 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.83099 * 180.02562 * 5 4 3 7 7 F 1.39903 * 109.47089 * 30.00674 * 6 5 4 8 8 F 1.39897 * 109.47196 * 150.00769 * 6 5 4 9 9 C 1.37358 * 106.34292 * 0.02562 * 5 4 3 10 10 C 1.47397 * 128.56962 * 180.25204 * 9 5 4 11 11 O 1.21609 * 120.00052 * 269.68313 * 10 9 5 12 12 N 1.34781 * 119.99829 * 89.67581 * 10 9 5 13 13 C 1.46498 * 120.00044 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.21061 * 34.99456 * 13 12 10 15 15 C 1.50120 * 110.24958 * 156.93406 * 13 12 10 16 16 C 1.54637 * 110.92758 * 216.54268 * 15 13 12 17 17 C 1.54899 * 110.18779 * 321.33596 * 16 15 13 18 18 N 1.43431 * 116.08183 * 318.52593 * 17 16 15 19 19 C 1.36938 * 120.54233 * 271.59313 * 18 17 16 20 20 H 1.08001 * 119.99346 * 336.68157 * 19 18 17 21 21 C 1.38807 * 120.00267 * 156.68310 * 19 18 17 22 22 N 1.31623 * 120.00040 * 340.40782 * 21 19 18 23 23 Si 1.86798 * 120.00074 * 160.40523 * 21 19 18 24 24 H 1.48504 * 109.47148 * 60.00152 * 23 21 19 25 25 H 1.48497 * 109.47308 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47234 * 300.00275 * 23 21 19 27 27 C 1.50169 * 118.92231 * 91.56630 * 18 17 16 28 28 C 1.46233 * 107.53797 * 289.59215 * 27 18 17 29 29 H 1.08994 * 109.47701 * 270.05039 * 1 2 3 30 30 H 1.09002 * 109.46649 * 30.04743 * 1 2 3 31 31 H 1.08999 * 109.47557 * 150.04327 * 1 2 3 32 32 H 1.09004 * 109.47394 * 270.00618 * 6 5 4 33 33 H 0.97000 * 119.99666 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.20883 * 336.99468 * 15 13 12 35 35 H 1.09000 * 109.20731 * 96.31076 * 15 13 12 36 36 H 1.09001 * 109.42566 * 201.05699 * 16 15 13 37 37 H 1.08999 * 109.13378 * 81.43241 * 16 15 13 38 38 H 1.09004 * 108.15859 * 196.81207 * 17 16 15 39 39 H 1.08994 * 108.00138 * 80.12450 * 17 16 15 40 40 H 0.97001 * 119.99930 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.84384 * 170.08142 * 27 18 17 42 42 H 1.09002 * 109.89906 * 49.13546 * 27 18 17 43 43 H 1.09003 * 108.52113 * 297.17174 * 28 27 18 44 44 H 1.08997 * 108.40752 * 179.56059 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0005 5 6 3.6493 -0.6009 0.0015 6 6 4.9711 -1.3249 0.0028 7 9 5.9283 -0.5466 0.6626 8 9 4.8309 -2.5504 0.6629 9 6 2.3991 -1.1697 0.0010 10 6 2.0398 -2.5993 0.0067 11 8 1.8886 -3.1924 -1.0441 12 7 1.8791 -3.2490 1.1766 13 6 1.5226 -4.6699 1.1823 14 1 1.9976 -5.1807 0.3448 15 6 1.9350 -5.3038 2.4792 16 6 2.4346 -6.7496 2.2529 17 6 1.5683 -7.4526 1.1784 18 7 0.1556 -7.2165 1.2539 19 6 -0.6438 -8.0182 2.0243 20 1 -0.3255 -9.0202 2.2715 21 6 -1.8630 -7.5431 2.4875 22 7 -2.0906 -6.2474 2.5315 23 14 -3.1808 -8.7424 3.0482 24 1 -2.6613 -9.5568 4.1762 25 1 -4.3795 -7.9878 3.4942 26 1 -3.5489 -9.6361 1.9208 27 6 -0.4327 -6.0754 0.4748 28 6 0.0079 -4.8344 1.1105 29 1 -0.3634 0.0009 1.0276 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3634 -0.8903 -0.5131 32 1 5.2905 -1.5000 -1.0245 33 1 1.9994 -2.7757 2.0147 34 1 2.7338 -4.7139 2.9286 35 1 1.0808 -5.3242 3.1559 36 1 2.3716 -7.3055 3.1884 37 1 3.4718 -6.7211 1.9190 38 1 1.7377 -8.5267 1.2548 39 1 1.9156 -7.1252 0.1986 40 1 -2.9425 -5.9154 2.8555 41 1 -1.5208 -6.1356 0.4951 42 1 -0.0796 -6.1089 -0.5559 43 1 -0.3921 -4.8036 2.1240 44 1 -0.4054 -3.9954 0.5507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052481397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:33 Heat of formation + Delta-G solvation = -59.356898 kcal Electronic energy + Delta-G solvation = -31581.299998 eV Core-core repulsion = 26980.272737 eV Total energy + Delta-G solvation = -4601.027261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.28239 -48.30685 -46.23100 -41.14618 -39.27546 -36.25325 -35.86889 -34.39183 -34.05052 -32.65028 -32.19604 -29.94462 -28.41739 -27.77025 -26.22414 -24.92287 -24.86624 -22.28793 -21.72809 -21.58378 -20.85040 -19.47192 -19.43113 -18.57481 -18.38036 -18.26998 -18.25481 -17.43154 -16.79994 -16.70908 -15.92619 -15.65185 -15.56578 -15.35170 -15.12503 -14.96962 -14.67315 -14.59555 -14.47032 -14.40703 -14.13199 -13.84265 -13.69572 -13.52995 -13.21855 -13.03262 -12.73874 -12.61866 -12.61155 -12.58134 -12.12197 -11.88371 -11.75549 -11.66974 -11.34509 -11.18063 -11.15084 -11.01653 -11.00924 -10.50353 -10.03351 -8.64104 -7.79837 -5.20012 -0.25722 0.58224 1.06969 1.23258 1.50175 1.53353 1.58427 1.97609 2.46946 2.57011 2.84093 2.89609 3.29495 3.33917 3.42497 3.59170 3.64059 3.82932 3.88655 4.02211 4.11998 4.27488 4.29609 4.50399 4.54764 4.59110 4.62990 4.69831 4.87933 4.95190 4.98885 5.00336 5.20609 5.25441 5.32230 5.39481 5.54235 5.62939 5.66168 5.71807 6.09226 6.38044 6.44911 6.82322 7.00321 7.20280 7.93262 8.44994 9.24713 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.003196 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.525472 B = 8758.697286 C = 9796.836497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.058 3.942 3 N -0.352 5.352 4 O 0.127 5.873 5 C -0.061 4.061 6 C 0.365 3.635 7 F -0.184 7.184 8 F -0.185 7.185 9 C -0.214 4.214 10 C 0.599 3.401 11 O -0.556 6.556 12 N -0.689 5.689 13 C 0.163 3.837 14 H 0.077 0.923 15 C -0.104 4.104 16 C -0.132 4.132 17 C 0.147 3.853 18 N -0.600 5.600 19 C -0.261 4.261 20 H 0.063 0.937 21 C -0.039 4.039 22 N -0.915 5.915 23 Si 0.955 3.045 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.287 1.287 27 C 0.173 3.827 28 C -0.117 4.117 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.192 0.808 33 H 0.409 0.591 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.036 0.964 40 H 0.247 0.753 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.079 0.921 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.361 13.568 -3.680 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 N -0.056 5.056 4 O 0.062 5.938 5 C -0.126 4.126 6 C 0.310 3.690 7 F -0.165 7.165 8 F -0.166 7.166 9 C -0.221 4.221 10 C 0.383 3.617 11 O -0.435 6.435 12 N -0.338 5.338 13 C 0.060 3.940 14 H 0.095 0.905 15 C -0.142 4.142 16 C -0.173 4.173 17 C 0.019 3.981 18 N -0.322 5.322 19 C -0.391 4.391 20 H 0.081 0.919 21 C -0.235 4.235 22 N -0.561 5.561 23 Si 0.784 3.216 24 H -0.207 1.207 25 H -0.222 1.222 26 H -0.213 1.213 27 C 0.049 3.951 28 C -0.157 4.157 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.209 0.791 33 H 0.246 0.754 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.098 0.902 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 12.908 14.493 -4.322 19.883 hybrid contribution -1.157 -1.135 0.966 1.886 sum 11.752 13.358 -3.356 18.105 Atomic orbital electron populations 1.20419 0.83128 1.05148 1.05312 1.25188 0.99857 0.85346 0.99970 1.73624 0.89187 1.23208 1.19556 1.84593 1.21410 1.20823 1.67007 1.25458 0.97488 0.85540 1.04155 1.20059 0.78617 0.73848 0.96452 1.93085 1.64385 1.75058 1.83960 1.93117 1.95657 1.43708 1.84094 1.22030 0.92956 0.95441 1.11673 1.16910 0.76723 0.83939 0.84166 1.90842 1.51976 1.68132 1.32548 1.46027 1.68325 1.11475 1.07997 1.20203 0.95568 0.78950 0.99299 0.90533 1.21503 1.00673 0.96493 0.95556 1.22689 0.99135 0.94975 1.00490 1.20578 0.83965 0.97442 0.96113 1.44321 1.01802 1.34454 1.51666 1.19377 1.00176 0.94173 1.25338 0.91906 1.25448 1.01283 0.96715 1.00020 1.70087 1.23487 1.11849 1.50704 0.85542 0.79335 0.78819 0.77857 1.20662 1.22189 1.21349 1.19935 0.98446 0.86487 0.90225 1.21109 0.93965 0.97206 1.03413 0.87899 0.87958 0.90046 0.79115 0.75445 0.90810 0.93132 0.93111 0.90489 0.94880 0.94525 0.94360 0.92134 0.97103 0.90225 0.95643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.49 71.24 0.75 -0.82 16 2 C 0.06 1.33 7.59 45.16 0.34 1.67 16 3 N -0.35 -8.14 12.01 -44.79 -0.54 -8.68 16 4 O 0.13 2.65 11.06 77.00 0.85 3.50 16 5 C -0.06 -1.20 7.13 25.48 0.18 -1.02 16 6 C 0.36 5.34 5.81 71.24 0.41 5.76 16 7 F -0.18 -2.88 17.32 44.97 0.78 -2.10 16 8 F -0.18 -3.65 16.10 44.97 0.72 -2.93 16 9 C -0.21 -5.20 6.19 -18.74 -0.12 -5.32 16 10 C 0.60 17.83 6.51 86.65 0.56 18.39 16 11 O -0.56 -20.77 16.79 -4.06 -0.07 -20.84 16 12 N -0.69 -19.75 4.97 -451.02 -2.24 -21.99 16 13 C 0.16 5.68 2.19 43.91 0.10 5.78 16 14 H 0.08 2.91 5.77 -2.39 -0.01 2.89 16 15 C -0.10 -3.50 5.29 30.22 0.16 -3.34 16 16 C -0.13 -4.47 6.40 31.80 0.20 -4.27 16 17 C 0.15 5.90 5.18 87.60 0.45 6.35 16 18 N -0.60 -28.84 2.60 -707.86 -1.84 -30.68 16 19 C -0.26 -13.77 9.63 84.03 0.81 -12.96 16 20 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 21 C -0.04 -2.04 4.91 84.86 0.42 -1.63 16 22 N -0.92 -49.71 9.43 21.65 0.20 -49.50 16 23 Si 0.95 43.65 29.60 68.60 2.03 45.68 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 27 C 0.17 8.20 5.24 83.58 0.44 8.64 16 28 C -0.12 -4.94 4.74 28.36 0.13 -4.80 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 32 H 0.19 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.41 9.80 8.47 -92.71 -0.79 9.02 16 34 H 0.07 2.03 7.83 -2.39 -0.02 2.01 16 35 H 0.05 2.05 6.84 -2.39 -0.02 2.03 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.03 1.32 7.99 -2.39 -0.02 1.30 16 39 H 0.04 1.40 6.88 -2.39 -0.02 1.39 16 40 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 41 H 0.06 3.23 6.05 -2.39 -0.01 3.22 16 42 H 0.01 0.50 8.13 -2.39 -0.02 0.48 16 43 H 0.08 3.80 5.30 -2.39 -0.01 3.79 16 44 H 0.02 1.06 7.96 -2.39 -0.02 1.04 16 Total: -1.00 -64.25 364.78 5.02 -59.23 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.28 Total: 15.88 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 4.85 Total: 12.44 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -4.42 Total: -110.86 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.78 Total: -17.34 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 1.50 Total: -5.03 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -64.25 5.02 -59.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052481397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.125 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds