Wall clock time and date at job start Wed Apr 1 2020 02:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.88492 * 2 1 4 4 C 1.55125 * 110.93844 * 124.07697 * 2 1 3 5 5 N 1.47427 * 104.72622 * 155.28801 * 4 2 1 6 6 C 1.34771 * 125.64876 * 155.81486 * 5 4 2 7 7 O 1.21606 * 120.00361 * 4.57505 * 6 5 4 8 8 C 1.47396 * 119.99663 * 184.58013 * 6 5 4 9 9 C 1.38958 * 120.65617 * 312.05580 * 8 6 5 10 10 C 1.38730 * 120.73373 * 179.74925 * 9 8 6 11 11 C 1.37503 * 121.68035 * 0.25189 * 10 9 8 12 12 F 1.35095 * 119.85331 * 179.97438 * 11 10 9 13 13 C 1.40589 * 120.29397 * 0.02562 * 11 10 9 14 14 C 1.40583 * 122.24872 * 180.02562 * 13 11 10 15 15 C 1.36312 * 118.64965 * 179.97438 * 14 13 11 16 16 N 1.32492 * 121.87720 * 0.02562 * 15 14 13 17 17 C 1.31368 * 122.68365 * 0.02562 * 16 15 14 18 18 C 1.40013 * 119.85293 * 0.02562 * 17 16 15 19 19 C 1.47029 * 108.69877 * 335.55453 * 5 4 2 20 20 C 1.54320 * 107.26875 * 1.28275 * 19 5 4 21 21 H 1.08996 * 110.72054 * 263.82494 * 20 19 5 22 22 N 1.46508 * 110.71625 * 140.55915 * 20 19 5 23 23 C 1.36937 * 120.00147 * 86.45358 * 22 20 19 24 24 H 1.08005 * 119.99856 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00001 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99663 * 179.97438 * 25 23 22 27 27 Si 1.86791 * 120.00163 * 359.97438 * 25 23 22 28 28 H 1.48510 * 109.47282 * 89.99828 * 27 25 23 29 29 H 1.48497 * 109.47252 * 209.99675 * 27 25 23 30 30 H 1.48504 * 109.47267 * 329.99944 * 27 25 23 31 31 H 1.09000 * 109.47272 * 183.87654 * 1 2 3 32 32 H 1.09000 * 109.47652 * 303.87967 * 1 2 3 33 33 H 1.09001 * 109.47014 * 63.88258 * 1 2 3 34 34 H 1.08999 * 110.50109 * 36.44775 * 4 2 1 35 35 H 1.09002 * 110.34314 * 274.05460 * 4 2 1 36 36 H 1.07996 * 119.62976 * 0.03254 * 9 8 6 37 37 H 1.08001 * 119.15912 * 180.28150 * 10 9 8 38 38 H 1.08008 * 120.67202 * 359.97346 * 14 13 11 39 39 H 1.07999 * 119.06094 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.07102 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.88150 * 120.70135 * 19 5 4 42 42 H 1.09000 * 109.87832 * 241.71243 * 19 5 4 43 43 H 0.96993 * 119.99744 * 266.45282 * 22 20 19 44 44 H 0.97002 * 119.99896 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0844 -0.8118 1.2000 5 7 3.4280 -1.2423 0.7726 6 6 4.4489 -1.5603 1.5929 7 8 4.2770 -1.5844 2.7965 8 6 5.7738 -1.8790 1.0311 9 6 5.8989 -2.7704 -0.0275 10 6 7.1446 -3.0675 -0.5608 11 6 8.2958 -2.5017 -0.0655 12 9 9.4898 -2.8178 -0.6128 13 6 8.2359 -1.5966 1.0085 14 6 9.3863 -0.9938 1.5466 15 6 9.2432 -0.1261 2.5881 16 7 8.0561 0.1604 3.1020 17 6 6.9411 -0.3666 2.6493 18 6 6.9812 -1.2712 1.5814 19 6 3.4678 -1.2731 -0.6969 20 6 2.0861 -0.8075 -1.2025 21 1 1.4472 -1.6631 -1.4211 22 7 2.2278 0.0502 -2.3817 23 6 2.3023 -0.5085 -3.6297 24 1 2.2571 -1.5814 -3.7447 25 6 2.4360 0.3042 -4.7471 26 7 2.5082 -0.2328 -5.9466 27 14 2.5136 2.1599 -4.5484 28 1 3.9277 2.5812 -4.3803 29 1 1.9432 2.8112 -5.7549 30 1 1.7315 2.5628 -3.3520 31 1 -0.3634 -1.0253 0.0695 32 1 -0.3634 0.5728 0.8531 33 1 -0.3633 0.4524 -0.9227 34 1 1.4538 -1.6784 1.3986 35 1 2.1523 -0.1801 2.0858 36 1 5.0160 -3.2336 -0.4425 37 1 7.2118 -3.7606 -1.3864 38 1 10.3637 -1.2138 1.1430 39 1 10.1226 0.3404 3.0069 40 1 5.9959 -0.1033 3.1004 41 1 4.2425 -0.5983 -1.0609 42 1 3.6685 -2.2877 -1.0410 43 1 2.2688 1.0137 -2.2785 44 1 2.6020 0.3351 -6.7274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054999289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:09 Heat of formation + Delta-G solvation = 0.417308 kcal Electronic energy + Delta-G solvation = -29710.365174 eV Core-core repulsion = 25542.699142 eV Total energy + Delta-G solvation = -4167.666032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.29648 -41.09007 -39.87253 -37.86448 -37.14730 -34.33384 -33.14546 -32.50550 -31.51053 -31.15869 -29.89107 -28.08042 -26.56232 -24.87296 -24.14959 -23.89205 -23.03085 -21.39349 -20.31409 -19.74393 -18.72395 -18.01447 -17.71055 -17.55376 -16.77690 -16.16254 -15.98738 -15.81021 -15.28147 -15.15889 -14.88550 -14.39992 -14.32823 -14.15105 -13.94397 -13.86448 -13.31433 -13.23367 -13.12050 -12.71667 -12.61213 -12.52205 -12.32284 -12.03319 -11.83661 -11.77046 -11.50546 -11.21905 -10.89611 -10.75333 -10.43318 -10.36662 -10.13961 -10.04001 -9.77403 -9.73344 -9.49913 -9.11935 -8.61102 -8.25199 -7.49481 -5.92829 -3.31315 -0.21056 0.50386 1.29070 2.35823 2.70561 2.99760 3.26787 3.29877 3.36504 3.67053 3.68805 4.12678 4.14422 4.31317 4.32138 4.45055 4.47764 4.59083 4.74827 4.90209 4.93837 4.97783 5.14536 5.30614 5.33449 5.39030 5.42769 5.46726 5.55353 5.59410 5.65218 5.68755 5.74824 5.75200 5.82217 5.97022 6.02320 6.15319 6.23371 6.26112 6.31150 6.38097 6.39168 6.63841 7.47125 7.68607 7.80177 8.01754 8.25645 9.01793 9.74297 9.91815 11.24601 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.003696 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.684712 B = 7574.677514 C = 8900.003662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.083 0.917 4 C 0.115 3.885 5 N -0.604 5.604 6 C 0.575 3.425 7 O -0.538 6.538 8 C -0.098 4.098 9 C -0.055 4.055 10 C -0.130 4.130 11 C 0.119 3.881 12 F -0.127 7.127 13 C -0.053 4.053 14 C -0.150 4.150 15 C 0.081 3.919 16 N -0.479 5.479 17 C 0.156 3.844 18 C -0.058 4.058 19 C 0.067 3.933 20 C 0.183 3.817 21 H 0.077 0.923 22 N -0.735 5.735 23 C -0.255 4.255 24 H 0.093 0.907 25 C 0.013 3.987 26 N -0.927 5.927 27 Si 0.881 3.119 28 H -0.283 1.283 29 H -0.289 1.289 30 H -0.276 1.276 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.365 0.635 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.808 -3.574 14.843 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.336 5.336 6 C 0.363 3.637 7 O -0.417 6.417 8 C -0.103 4.103 9 C -0.074 4.074 10 C -0.150 4.150 11 C 0.099 3.901 12 F -0.105 7.105 13 C -0.059 4.059 14 C -0.170 4.170 15 C -0.063 4.063 16 N -0.187 5.187 17 C -0.014 4.014 18 C -0.061 4.061 19 C -0.059 4.059 20 C 0.071 3.929 21 H 0.095 0.905 22 N -0.377 5.377 23 C -0.385 4.385 24 H 0.111 0.889 25 C -0.184 4.184 26 N -0.574 5.574 27 Si 0.711 3.289 28 H -0.210 1.210 29 H -0.216 1.216 30 H -0.202 1.202 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.191 0.809 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.198 0.802 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.924 -3.149 15.946 18.083 hybrid contribution 0.566 0.590 -1.110 1.378 sum 8.490 -2.559 14.837 17.285 Atomic orbital electron populations 1.21629 0.93492 1.01995 1.02173 1.22718 0.96672 0.99671 0.94671 0.89886 1.22370 0.82181 0.98422 0.97776 1.48466 1.11801 1.65095 1.08239 1.17555 0.82940 0.77520 0.85706 1.90803 1.83728 1.53182 1.14005 1.20845 0.92269 0.99807 0.97413 1.21356 0.97856 0.95454 0.92697 1.21056 0.90769 1.01565 1.01629 1.17584 0.81338 0.97274 0.93865 1.91519 1.43674 1.91142 1.84186 1.17986 0.94076 0.97796 0.96038 1.21849 0.98363 0.98450 0.98289 1.22285 0.95478 0.95187 0.93384 1.67574 0.98516 1.23646 1.28949 1.23364 0.97523 0.89854 0.90662 1.19452 0.90946 0.98392 0.97285 1.23505 1.03359 1.01851 0.77146 1.21215 0.91671 0.93929 0.86084 0.90544 1.42710 1.88608 1.04062 1.02281 1.19039 1.43842 0.93967 0.81644 0.88949 1.24660 1.01284 0.97340 0.95101 1.69690 1.55930 1.34375 0.97360 0.86620 0.77966 0.87198 0.77145 1.21004 1.21561 1.20167 0.92418 0.92937 0.91390 0.90960 0.90514 0.83248 0.83271 0.83805 0.82433 0.80891 0.90504 0.91451 0.80191 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.31 37.16 0.35 -1.25 16 2 C -0.12 -1.56 3.26 -88.36 -0.29 -1.85 16 3 H 0.08 1.15 8.00 -51.93 -0.42 0.74 16 4 C 0.11 1.44 6.36 -2.41 -0.02 1.42 16 5 N -0.60 -8.35 3.32 -171.66 -0.57 -8.92 16 6 C 0.57 8.38 6.95 -12.53 -0.09 8.29 16 7 O -0.54 -8.95 15.77 5.27 0.08 -8.86 16 8 C -0.10 -1.31 5.57 -102.82 -0.57 -1.89 16 9 C -0.05 -0.64 8.52 -39.13 -0.33 -0.97 16 10 C -0.13 -1.41 9.90 -39.67 -0.39 -1.80 16 11 C 0.12 1.40 7.28 -38.96 -0.28 1.11 16 12 F -0.13 -1.45 16.72 2.25 0.04 -1.42 16 13 C -0.05 -0.66 5.75 -106.80 -0.61 -1.27 16 14 C -0.15 -1.60 9.70 -39.39 -0.38 -1.98 16 15 C 0.08 0.88 11.07 -17.96 -0.20 0.68 16 16 N -0.48 -6.35 10.30 -13.23 -0.14 -6.49 16 17 C 0.16 2.13 10.53 -17.09 -0.18 1.95 16 18 C -0.06 -0.78 5.90 -104.82 -0.62 -1.40 16 19 C 0.07 0.99 5.42 -3.06 -0.02 0.97 16 20 C 0.18 2.95 3.06 -66.09 -0.20 2.75 16 21 H 0.08 1.25 8.02 -51.93 -0.42 0.84 16 22 N -0.74 -15.19 4.98 -51.65 -0.26 -15.45 16 23 C -0.26 -6.46 10.46 -15.06 -0.16 -6.61 16 24 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 25 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 26 N -0.93 -27.33 13.97 55.49 0.78 -26.56 16 27 Si 0.88 20.69 27.73 -169.99 -4.71 15.98 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 31 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.83 7.99 -51.93 -0.41 0.42 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.15 1.54 5.98 -52.49 -0.31 1.23 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.14 1.19 7.81 -52.48 -0.41 0.78 16 39 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.17 2.38 6.42 -52.49 -0.34 2.04 16 41 H 0.08 1.26 8.03 -51.93 -0.42 0.85 16 42 H 0.07 0.92 6.03 -51.93 -0.31 0.61 16 43 H 0.36 7.57 5.58 -40.82 -0.23 7.34 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -30.70 366.86 -8.73 -39.43 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.39 Total: 8.36 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -4.09 Total: -1.61 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.19 Total: -57.41 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.71 Total: 15.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.70 -8.73 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054999289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.848 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds