Wall clock time and date at job start Wed Apr 1 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.88492 * 2 1 4 4 C 1.55125 * 110.93844 * 124.07697 * 2 1 3 5 5 N 1.47427 * 104.72622 * 155.28801 * 4 2 1 6 6 C 1.34771 * 125.64876 * 155.81486 * 5 4 2 7 7 O 1.21606 * 120.00361 * 4.57505 * 6 5 4 8 8 C 1.47396 * 119.99663 * 184.58013 * 6 5 4 9 9 C 1.38958 * 120.65617 * 312.05580 * 8 6 5 10 10 C 1.38730 * 120.73373 * 179.74925 * 9 8 6 11 11 C 1.37503 * 121.68035 * 0.25189 * 10 9 8 12 12 F 1.35095 * 119.85331 * 179.97438 * 11 10 9 13 13 C 1.40589 * 120.29397 * 0.02562 * 11 10 9 14 14 C 1.40583 * 122.24872 * 180.02562 * 13 11 10 15 15 C 1.36312 * 118.64965 * 179.97438 * 14 13 11 16 16 N 1.32492 * 121.87720 * 0.02562 * 15 14 13 17 17 C 1.31368 * 122.68365 * 0.02562 * 16 15 14 18 18 C 1.40013 * 119.85293 * 0.02562 * 17 16 15 19 19 C 1.47029 * 108.69877 * 335.55453 * 5 4 2 20 20 C 1.54320 * 107.26875 * 1.28275 * 19 5 4 21 21 H 1.08996 * 110.72054 * 263.82494 * 20 19 5 22 22 N 1.46508 * 110.71625 * 140.55915 * 20 19 5 23 23 C 1.36937 * 120.00147 * 86.45358 * 22 20 19 24 24 H 1.08005 * 119.99856 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00001 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99663 * 179.97438 * 25 23 22 27 27 Si 1.86791 * 120.00163 * 359.97438 * 25 23 22 28 28 H 1.48510 * 109.47282 * 89.99828 * 27 25 23 29 29 H 1.48497 * 109.47252 * 209.99675 * 27 25 23 30 30 H 1.48504 * 109.47267 * 329.99944 * 27 25 23 31 31 H 1.09000 * 109.47272 * 183.87654 * 1 2 3 32 32 H 1.09000 * 109.47652 * 303.87967 * 1 2 3 33 33 H 1.09001 * 109.47014 * 63.88258 * 1 2 3 34 34 H 1.08999 * 110.50109 * 36.44775 * 4 2 1 35 35 H 1.09002 * 110.34314 * 274.05460 * 4 2 1 36 36 H 1.07996 * 119.62976 * 0.03254 * 9 8 6 37 37 H 1.08001 * 119.15912 * 180.28150 * 10 9 8 38 38 H 1.08008 * 120.67202 * 359.97346 * 14 13 11 39 39 H 1.07999 * 119.06094 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.07102 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.88150 * 120.70135 * 19 5 4 42 42 H 1.09000 * 109.87832 * 241.71243 * 19 5 4 43 43 H 0.96993 * 119.99744 * 266.45282 * 22 20 19 44 44 H 0.97002 * 119.99896 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0844 -0.8118 1.2000 5 7 3.4280 -1.2423 0.7726 6 6 4.4489 -1.5603 1.5929 7 8 4.2770 -1.5844 2.7965 8 6 5.7738 -1.8790 1.0311 9 6 5.8989 -2.7704 -0.0275 10 6 7.1446 -3.0675 -0.5608 11 6 8.2958 -2.5017 -0.0655 12 9 9.4898 -2.8178 -0.6128 13 6 8.2359 -1.5966 1.0085 14 6 9.3863 -0.9938 1.5466 15 6 9.2432 -0.1261 2.5881 16 7 8.0561 0.1604 3.1020 17 6 6.9411 -0.3666 2.6493 18 6 6.9812 -1.2712 1.5814 19 6 3.4678 -1.2731 -0.6969 20 6 2.0861 -0.8075 -1.2025 21 1 1.4472 -1.6631 -1.4211 22 7 2.2278 0.0502 -2.3817 23 6 2.3023 -0.5085 -3.6297 24 1 2.2571 -1.5814 -3.7447 25 6 2.4360 0.3042 -4.7471 26 7 2.5082 -0.2328 -5.9466 27 14 2.5136 2.1599 -4.5484 28 1 3.9277 2.5812 -4.3803 29 1 1.9432 2.8112 -5.7549 30 1 1.7315 2.5628 -3.3520 31 1 -0.3634 -1.0253 0.0695 32 1 -0.3634 0.5728 0.8531 33 1 -0.3633 0.4524 -0.9227 34 1 1.4538 -1.6784 1.3986 35 1 2.1523 -0.1801 2.0858 36 1 5.0160 -3.2336 -0.4425 37 1 7.2118 -3.7606 -1.3864 38 1 10.3637 -1.2138 1.1430 39 1 10.1226 0.3404 3.0069 40 1 5.9959 -0.1033 3.1004 41 1 4.2425 -0.5983 -1.0609 42 1 3.6685 -2.2877 -1.0410 43 1 2.2688 1.0137 -2.2785 44 1 2.6020 0.3351 -6.7274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054999289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:08 Heat of formation + Delta-G solvation = -17.703045 kcal Electronic energy + Delta-G solvation = -29711.150932 eV Core-core repulsion = 25542.699142 eV Total energy + Delta-G solvation = -4168.451790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.20158 -42.06901 -40.96627 -39.06491 -38.11335 -35.97174 -34.25898 -33.66786 -32.85017 -32.43239 -30.82690 -29.50354 -27.56960 -25.97963 -25.48490 -24.91971 -24.16376 -22.69806 -21.60924 -20.80283 -19.66771 -19.49158 -18.95217 -18.60830 -17.84756 -17.27695 -16.98439 -16.91653 -16.39267 -16.21009 -16.08451 -15.86818 -15.24370 -15.20985 -15.10187 -14.99280 -14.82386 -14.31831 -14.25122 -14.17216 -13.70212 -13.59613 -13.40566 -13.18367 -13.00963 -12.93617 -12.88614 -12.61802 -12.20701 -12.15262 -11.90598 -11.77962 -11.43374 -11.32160 -11.17999 -10.94152 -10.71530 -10.42711 -9.76357 -9.35624 -9.16727 -7.99860 -5.34174 -1.15082 -0.40827 0.34573 1.33424 1.40577 1.41559 1.48894 1.67261 1.94653 2.49928 2.74856 2.75287 3.10279 3.24453 3.30684 3.34862 3.42518 3.56067 3.61857 3.65577 3.72848 3.81376 4.13427 4.17069 4.22466 4.31799 4.39588 4.42264 4.52485 4.58592 4.62202 4.69393 4.76008 4.83321 4.88900 4.92151 4.94991 5.07962 5.12278 5.17529 5.31687 5.38059 5.49390 5.49967 5.80867 6.23520 6.32386 6.76277 6.89197 7.09135 7.83777 8.01119 9.20812 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.003696 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.684712 B = 7574.677514 C = 8900.003662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.578 3.422 7 O -0.562 6.562 8 C -0.119 4.119 9 C -0.048 4.048 10 C -0.130 4.130 11 C 0.119 3.881 12 F -0.124 7.124 13 C -0.067 4.067 14 C -0.143 4.143 15 C 0.075 3.925 16 N -0.494 5.494 17 C 0.138 3.862 18 C -0.069 4.069 19 C 0.078 3.922 20 C 0.174 3.826 21 H 0.077 0.923 22 N -0.738 5.738 23 C -0.226 4.226 24 H 0.069 0.931 25 C -0.054 4.054 26 N -0.979 5.979 27 Si 0.940 3.060 28 H -0.285 1.285 29 H -0.301 1.301 30 H -0.249 1.249 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.192 0.808 40 H 0.164 0.836 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.366 0.634 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.450 -3.395 16.212 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.333 5.333 6 C 0.367 3.633 7 O -0.443 6.443 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.149 4.149 11 C 0.099 3.901 12 F -0.102 7.102 13 C -0.074 4.074 14 C -0.162 4.162 15 C -0.069 4.069 16 N -0.202 5.202 17 C -0.031 4.031 18 C -0.072 4.072 19 C -0.047 4.047 20 C 0.064 3.936 21 H 0.095 0.905 22 N -0.380 5.380 23 C -0.356 4.356 24 H 0.087 0.913 25 C -0.246 4.246 26 N -0.629 5.629 27 Si 0.769 3.231 28 H -0.212 1.212 29 H -0.228 1.228 30 H -0.174 1.174 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.179 0.821 37 H 0.191 0.809 38 H 0.188 0.812 39 H 0.208 0.792 40 H 0.181 0.819 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.200 0.800 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.544 -2.974 17.388 19.601 hybrid contribution 0.431 0.431 -1.459 1.581 sum 8.975 -2.543 15.929 18.460 Atomic orbital electron populations 1.21611 0.92089 1.02966 1.02258 1.22644 0.97744 0.99052 0.93211 0.90211 1.22466 0.81622 0.99021 0.97463 1.48439 1.12324 1.64937 1.07639 1.17695 0.83328 0.76948 0.85349 1.90784 1.84131 1.54362 1.14975 1.20824 0.91726 1.01245 0.98611 1.21533 0.98738 0.94576 0.91853 1.21313 0.90102 1.01576 1.01957 1.17653 0.81690 0.97077 0.93666 1.91528 1.43521 1.91071 1.84079 1.18222 0.94328 0.98334 0.96491 1.22189 0.98932 0.97408 0.97682 1.22833 0.95588 0.95147 0.93341 1.67565 0.99209 1.23963 1.29496 1.23239 0.97575 0.90876 0.91422 1.19515 0.91510 0.98696 0.97514 1.23181 1.01672 1.02080 0.77763 1.21423 0.92570 0.93930 0.85643 0.90532 1.42680 1.88697 1.04595 1.02037 1.19027 1.40366 0.92937 0.83316 0.91318 1.25335 1.02746 1.01608 0.94901 1.69851 1.59109 1.35761 0.98221 0.85633 0.77927 0.82106 0.77458 1.21205 1.22780 1.17392 0.91390 0.90725 0.93086 0.89394 0.89927 0.82065 0.80869 0.81176 0.79151 0.81893 0.92060 0.90275 0.80023 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.31 71.98 0.67 -2.11 16 2 C -0.11 -2.61 3.26 -9.33 -0.03 -2.64 16 3 H 0.08 2.04 8.00 -2.39 -0.02 2.02 16 4 C 0.12 2.66 6.36 86.93 0.55 3.21 16 5 N -0.60 -15.85 3.32 -815.26 -2.71 -18.56 16 6 C 0.58 16.49 6.95 86.66 0.60 17.09 16 7 O -0.56 -18.55 15.77 -4.05 -0.06 -18.61 16 8 C -0.12 -3.12 5.57 -18.70 -0.10 -3.22 16 9 C -0.05 -1.06 8.52 22.56 0.19 -0.87 16 10 C -0.13 -2.57 9.90 22.21 0.22 -2.35 16 11 C 0.12 2.58 7.28 22.67 0.17 2.75 16 12 F -0.12 -2.56 16.72 44.97 0.75 -1.81 16 13 C -0.07 -1.59 5.75 -21.27 -0.12 -1.72 16 14 C -0.14 -2.76 9.70 22.39 0.22 -2.54 16 15 C 0.08 1.49 11.07 84.14 0.93 2.42 16 16 N -0.49 -12.80 10.30 -195.77 -2.02 -14.82 16 17 C 0.14 3.80 10.53 85.19 0.90 4.70 16 18 C -0.07 -1.85 5.90 -19.99 -0.12 -1.97 16 19 C 0.08 2.22 5.42 86.73 0.47 2.69 16 20 C 0.17 5.37 3.06 46.18 0.14 5.51 16 21 H 0.08 2.40 8.02 -2.39 -0.02 2.38 16 22 N -0.74 -29.66 4.98 -317.32 -1.58 -31.24 16 23 C -0.23 -11.39 10.46 84.03 0.88 -10.51 16 24 H 0.07 3.76 8.06 -2.91 -0.02 3.73 16 25 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 26 N -0.98 -59.08 13.97 21.65 0.30 -58.78 16 27 Si 0.94 42.68 27.73 68.60 1.90 44.58 16 28 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 29 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 30 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 31 H 0.07 1.30 8.07 -2.39 -0.02 1.28 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.78 7.99 -2.39 -0.02 1.76 16 35 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.16 3.05 5.98 -2.91 -0.02 3.03 16 37 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.17 2.30 7.81 -2.91 -0.02 2.28 16 39 H 0.19 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.16 4.66 6.42 -2.91 -0.02 4.64 16 41 H 0.06 1.96 8.03 -2.39 -0.02 1.94 16 42 H 0.08 2.05 6.03 -2.39 -0.01 2.03 16 43 H 0.37 14.54 5.58 -92.71 -0.52 14.03 16 44 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -67.03 366.86 3.09 -63.94 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.48 Total: 27.35 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.03 Total: 7.95 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -6.01 Total: -123.40 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.06 Total: -18.61 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.75 Total: -1.81 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.90 Total: 44.58 kcal Total: -67.03 3.09 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054999289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.234 kcal (2) G-P(sol) polarization free energy of solvation -67.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds