Wall clock time and date at job start Wed Apr 1 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.92037 * 2 1 4 4 C 1.54917 * 111.00075 * 236.10293 * 2 1 3 5 5 N 1.47427 * 104.82965 * 204.91907 * 4 2 1 6 6 C 1.36935 * 125.64416 * 204.09508 * 5 4 2 7 7 H 1.08003 * 120.00262 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00027 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99900 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00279 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46951 * 179.97438 * 10 8 6 12 12 H 1.48499 * 109.46903 * 299.99562 * 10 8 6 13 13 H 1.48493 * 109.47166 * 59.99719 * 10 8 6 14 14 C 1.47020 * 108.70412 * 24.35626 * 5 4 2 15 15 C 1.54328 * 107.26529 * 358.58520 * 14 5 4 16 16 H 1.09002 * 110.51706 * 96.45224 * 15 14 5 17 17 N 1.46502 * 110.85042 * 219.67097 * 15 14 5 18 18 C 1.34771 * 120.00242 * 268.69636 * 17 15 14 19 19 O 1.21614 * 119.99847 * 359.97438 * 18 17 15 20 20 C 1.47400 * 120.00185 * 180.02562 * 18 17 15 21 21 C 1.38949 * 120.65337 * 354.27325 * 20 18 17 22 22 C 1.38736 * 120.73363 * 179.71562 * 21 20 18 23 23 C 1.37498 * 121.67403 * 0.57679 * 22 21 20 24 24 F 1.35103 * 119.84986 * 179.73425 * 23 22 21 25 25 C 1.40582 * 120.29856 * 359.71189 * 23 22 21 26 26 C 1.40582 * 122.24930 * 180.02562 * 25 23 22 27 27 C 1.36322 * 118.64928 * 180.02562 * 26 25 23 28 28 N 1.32484 * 121.87585 * 359.95591 * 27 26 25 29 29 C 1.31369 * 122.68717 * 0.02911 * 28 27 26 30 30 C 1.40017 * 119.85154 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47646 * 182.44241 * 1 2 3 32 32 H 1.09002 * 109.47353 * 302.44199 * 1 2 3 33 33 H 1.09006 * 109.47461 * 62.44145 * 1 2 3 34 34 H 1.09003 * 110.36630 * 86.08188 * 4 2 1 35 35 H 1.09002 * 110.46404 * 323.80243 * 4 2 1 36 36 H 0.97001 * 120.00368 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.88102 * 118.13366 * 14 5 4 38 38 H 1.09004 * 109.88036 * 239.29604 * 14 5 4 39 39 H 0.96998 * 119.99811 * 88.69366 * 17 15 14 40 40 H 1.08004 * 119.63281 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.16540 * 180.26420 * 22 21 20 42 42 H 1.07997 * 120.67938 * 0.02562 * 26 25 23 43 43 H 1.08001 * 119.06187 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.07050 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4270 -1.2431 -0.7735 6 6 4.4638 -1.5667 -1.6074 7 1 4.3329 -1.5123 -2.6781 8 6 5.6829 -1.9655 -1.0767 9 7 5.8424 -2.0323 0.2281 10 14 7.0971 -2.4076 -2.2143 11 1 8.2799 -2.7974 -1.4052 12 1 6.6963 -3.5422 -3.0844 13 1 7.4396 -1.2342 -3.0573 14 6 3.4657 -1.2796 0.6957 15 6 2.0861 -0.8081 1.2021 16 1 1.4467 -1.6634 1.4207 17 7 2.2287 0.0492 2.3814 18 6 2.2005 -0.4920 3.6154 19 8 2.0563 -1.6920 3.7498 20 6 2.3433 0.3707 4.8020 21 6 2.6256 1.7242 4.6640 22 6 2.7546 2.5389 5.7796 23 6 2.6214 2.0429 7.0551 24 9 2.7597 2.8686 8.1154 25 6 2.3416 0.6807 7.2607 26 6 2.1966 0.1304 8.5462 27 6 1.9260 -1.2008 8.6606 28 7 1.7964 -1.9822 7.5987 29 6 1.9188 -1.5349 6.3695 30 6 2.1969 -0.1811 6.1450 31 1 -0.3634 -1.0267 0.0438 32 1 -0.3634 0.5513 0.8673 33 1 -0.3634 0.4755 -0.9111 34 1 2.1559 -0.1718 -2.0838 35 1 1.4524 -1.6703 -1.4046 36 1 6.6944 -2.3106 0.5991 37 1 3.6600 -2.2967 1.0363 38 1 4.2424 -0.6087 1.0629 39 1 2.3434 1.0064 2.2742 40 1 2.7418 2.1476 3.6772 41 1 2.9700 3.5883 5.6428 42 1 2.2976 0.7496 9.4253 43 1 1.8138 -1.6306 9.6451 44 1 1.8043 -2.2097 5.5341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080309371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:38 Heat of formation + Delta-G solvation = 8.562996 kcal Electronic energy + Delta-G solvation = -29425.427244 eV Core-core repulsion = 25258.114435 eV Total energy + Delta-G solvation = -4167.312809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.37936 -41.01643 -39.53285 -37.70967 -37.09597 -34.12049 -32.97647 -32.61617 -31.42234 -30.41503 -29.97596 -27.72112 -25.69316 -24.99746 -24.03137 -23.84478 -22.93051 -20.96944 -20.14219 -19.86646 -18.51734 -18.09635 -17.75050 -17.02364 -16.66984 -16.12254 -15.96131 -15.46788 -15.13913 -15.02003 -14.73509 -14.63803 -14.24744 -13.95676 -13.75385 -13.51748 -13.29660 -13.07380 -12.83399 -12.71564 -12.62578 -12.13465 -11.92520 -11.81927 -11.74395 -11.39573 -11.05231 -10.78646 -10.70060 -10.48108 -10.29194 -10.04797 -9.99001 -9.82634 -9.71453 -9.53257 -9.50721 -8.71354 -8.60771 -8.24844 -6.86737 -5.71755 -3.07043 -0.26442 0.50709 1.31377 2.35909 3.16128 3.22880 3.40005 3.44452 3.46105 3.62251 3.80471 4.12483 4.19139 4.40772 4.45912 4.49978 4.55367 4.59736 4.97125 4.99875 5.17361 5.25805 5.35792 5.38384 5.40412 5.51813 5.53255 5.67719 5.69309 5.76486 5.78938 5.92968 5.94119 6.09343 6.12500 6.26920 6.30703 6.41853 6.47865 6.58308 6.67439 6.86768 7.46057 7.53796 7.72164 7.80699 7.81775 8.22455 8.33743 9.19117 9.79827 10.44090 11.38932 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.002849 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.211884 B = 9826.410247 C =10298.882658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.605 5.605 6 C -0.232 4.232 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.290 1.290 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.173 3.827 15 C 0.118 3.882 16 H 0.094 0.906 17 N -0.699 5.699 18 C 0.560 3.440 19 O -0.527 6.527 20 C -0.098 4.098 21 C -0.059 4.059 22 C -0.138 4.138 23 C 0.122 3.878 24 F -0.128 7.128 25 C -0.056 4.056 26 C -0.159 4.159 27 C 0.084 3.916 28 N -0.482 5.482 29 C 0.153 3.847 30 C -0.059 4.059 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.023 0.977 36 H 0.253 0.747 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.396 0.604 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 11.057 13.304 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.047 3.953 15 C 0.014 3.986 16 H 0.112 0.888 17 N -0.349 5.349 18 C 0.347 3.653 19 O -0.406 6.406 20 C -0.103 4.103 21 C -0.078 4.078 22 C -0.158 4.158 23 C 0.102 3.898 24 F -0.106 7.106 25 C -0.062 4.062 26 C -0.179 4.179 27 C -0.060 4.060 28 N -0.190 5.190 29 C -0.015 4.015 30 C -0.062 4.062 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.231 0.769 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.174 0.826 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.538 9.267 13.718 19.624 hybrid contribution 1.266 1.502 -0.412 2.007 sum -9.271 10.769 13.306 19.467 Atomic orbital electron populations 1.21704 0.94940 1.01861 1.01042 1.22623 0.94894 0.99495 0.96339 0.90445 1.21588 0.87630 0.95093 0.94289 1.44389 1.07871 1.79254 1.01713 1.18997 0.89291 1.38831 0.88903 0.90362 1.24817 0.97874 1.01591 0.96005 1.69945 1.24337 1.53145 1.09211 0.86204 0.81839 0.78279 0.79445 1.21602 1.21118 1.21198 1.21490 0.89851 1.00475 0.83488 1.22617 1.00702 0.92798 0.82493 0.88836 1.45827 1.72485 1.11143 1.05402 1.17784 0.77304 0.87418 0.82816 1.90633 1.49770 1.14722 1.85459 1.21077 1.02943 0.93833 0.92444 1.21236 0.95521 0.91941 0.99119 1.20978 1.02685 1.01835 0.90341 1.17621 1.01288 0.86840 0.84017 1.91516 1.92812 1.71044 1.55275 1.18038 1.01450 0.92155 0.94536 1.21799 1.02448 0.97398 0.96256 1.22361 0.95324 0.90246 0.98089 1.67730 1.12722 1.39292 0.99250 1.24478 0.89142 0.92626 0.95293 1.19614 1.00272 0.95306 0.91002 0.92516 0.93144 0.92682 0.93924 0.95956 0.93633 0.93262 0.93071 0.76878 0.83762 0.83567 0.84046 0.82623 0.78062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.30 37.16 0.35 -1.34 16 2 C -0.11 -1.75 3.27 -88.47 -0.29 -2.03 16 3 H 0.08 1.12 8.01 -51.93 -0.42 0.70 16 4 C 0.14 2.72 6.70 -2.52 -0.02 2.70 16 5 N -0.61 -14.96 3.39 -170.06 -0.58 -15.53 16 6 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 7 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 8 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 9 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 10 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.17 4.08 5.13 -3.06 -0.02 4.07 16 15 C 0.12 2.09 2.78 -66.09 -0.18 1.90 16 16 H 0.09 1.75 7.42 -51.93 -0.39 1.37 16 17 N -0.70 -10.12 5.06 -53.11 -0.27 -10.39 16 18 C 0.56 8.66 7.75 -12.53 -0.10 8.56 16 19 O -0.53 -9.83 13.29 5.27 0.07 -9.76 16 20 C -0.10 -1.25 6.05 -102.83 -0.62 -1.87 16 21 C -0.06 -0.57 9.51 -39.13 -0.37 -0.94 16 22 C -0.14 -1.23 9.90 -39.67 -0.39 -1.62 16 23 C 0.12 1.27 7.28 -38.97 -0.28 0.99 16 24 F -0.13 -1.29 16.72 2.25 0.04 -1.25 16 25 C -0.06 -0.66 5.75 -106.80 -0.61 -1.28 16 26 C -0.16 -1.67 9.70 -39.39 -0.38 -2.05 16 27 C 0.08 0.94 11.07 -17.96 -0.20 0.74 16 28 N -0.48 -6.77 10.30 -13.23 -0.14 -6.90 16 29 C 0.15 2.25 10.55 -17.08 -0.18 2.07 16 30 C -0.06 -0.80 5.90 -104.82 -0.62 -1.41 16 31 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 36 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.05 1.37 7.52 -51.93 -0.39 0.98 16 38 H 0.05 1.33 7.25 -51.93 -0.38 0.95 16 39 H 0.40 4.47 6.65 -40.82 -0.27 4.20 16 40 H 0.14 1.02 6.45 -52.48 -0.34 0.68 16 41 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.14 1.13 7.81 -52.49 -0.41 0.72 16 43 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.20 3.21 5.15 -52.48 -0.27 2.94 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -32.69 365.44 -9.35 -42.04 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.36 Total: 4.03 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -4.17 Total: 1.70 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.41 Total: -59.20 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.69 -9.35 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080309371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.600 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds