Wall clock time and date at job start Wed Apr 1 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.36936 * 125.64929 * 204.09758 * 5 4 2 7 7 H 1.07994 * 119.99970 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99724 * 180.02562 * 6 5 4 9 9 N 1.31612 * 120.00298 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99602 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47193 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46920 * 119.99583 * 10 8 6 13 13 H 1.48505 * 109.47294 * 239.99760 * 10 8 6 14 14 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 15 15 C 1.54327 * 107.27336 * 358.94217 * 14 5 4 16 16 H 1.08993 * 110.72079 * 96.16743 * 15 14 5 17 17 N 1.46496 * 110.72108 * 219.44674 * 15 14 5 18 18 C 1.34779 * 119.99871 * 273.54072 * 17 15 14 19 19 O 1.21562 * 119.99913 * 0.02562 * 18 17 15 20 20 C 1.47777 * 120.00076 * 180.02562 * 18 17 15 21 21 C 1.40602 * 119.78839 * 0.02562 * 20 18 17 22 22 C 1.35918 * 120.88771 * 179.97438 * 21 20 18 23 23 F 1.35104 * 119.97003 * 180.02562 * 22 21 20 24 24 C 1.40961 * 120.06107 * 0.02562 * 22 21 20 25 25 N 1.33633 * 120.82769 * 179.97438 * 24 22 21 26 26 C 1.31108 * 121.39179 * 179.97438 * 25 24 22 27 27 C 1.39318 * 121.76461 * 0.03551 * 26 25 24 28 28 C 1.36572 * 119.90356 * 359.97438 * 27 26 25 29 29 C 1.40894 * 118.15857 * 359.97438 * 28 27 26 30 30 C 1.38539 * 119.78854 * 179.72831 * 20 18 17 31 31 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 32 32 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 33 33 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 34 34 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 35 35 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 36 36 H 0.97002 * 120.00251 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.88723 * 239.52626 * 14 5 4 38 38 H 1.09000 * 110.01436 * 118.43179 * 14 5 4 39 39 H 0.96996 * 120.00232 * 93.54399 * 17 15 14 40 40 H 1.07998 * 119.55775 * 0.02562 * 21 20 18 41 41 H 1.08005 * 119.11133 * 180.02562 * 26 25 24 42 42 H 1.08007 * 120.04588 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.91937 * 179.97438 * 28 27 26 44 44 H 1.08004 * 120.27012 * 359.97438 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4639 -1.5668 -1.6072 7 1 4.3333 -1.5118 -2.6777 8 6 5.6830 -1.9656 -1.0762 9 7 5.8424 -2.0321 0.2285 10 14 7.0972 -2.4077 -2.2137 11 1 6.6640 -2.2523 -3.6256 12 1 8.2474 -1.5072 -1.9465 13 1 7.5043 -3.8155 -1.9734 14 6 3.4674 -1.2742 0.6960 15 6 2.0861 -0.8079 1.2023 16 1 1.4467 -1.6631 1.4210 17 7 2.2286 0.0496 2.3814 18 6 2.3021 -0.5003 3.6097 19 8 2.2506 -1.7080 3.7390 20 6 2.4453 0.3647 4.7993 21 6 2.5039 1.7610 4.6446 22 6 2.6349 2.5776 5.7232 23 9 2.6888 3.9168 5.5532 24 6 2.7146 2.0285 7.0190 25 7 2.8441 2.8170 8.0901 26 6 2.9187 2.3182 9.3003 27 6 2.8679 0.9454 9.5322 28 6 2.7365 0.0819 8.4823 29 6 2.6556 0.6219 7.1834 30 6 2.5148 -0.2050 6.0602 31 1 -0.3634 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1721 -2.0837 35 1 1.4524 -1.6705 -1.4043 36 1 6.6943 -2.3104 0.5995 37 1 4.2425 -0.5998 1.0600 38 1 3.6661 -2.2884 1.0424 39 1 2.2701 1.0132 2.2782 40 1 2.4432 2.1904 3.6556 41 1 3.0225 2.9896 10.1399 42 1 2.9315 0.5646 10.5409 43 1 2.6959 -0.9852 8.6431 44 1 2.4643 -1.2775 6.1766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080626719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:29 Heat of formation + Delta-G solvation = 4.804675 kcal Electronic energy + Delta-G solvation = -29138.205966 eV Core-core repulsion = 24970.730184 eV Total energy + Delta-G solvation = -4167.475782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.05784 -41.13937 -39.72146 -37.79356 -36.69244 -34.10199 -33.63417 -32.72422 -31.13000 -30.38699 -30.07145 -27.88366 -25.71101 -25.11280 -24.47386 -23.54405 -22.36788 -21.25994 -20.12574 -19.92002 -18.65601 -18.18511 -17.58940 -16.89171 -16.50011 -16.03065 -16.01147 -15.68478 -15.24520 -14.96837 -14.50668 -14.48684 -14.19966 -14.16750 -13.72948 -13.56046 -13.25503 -13.07554 -12.84854 -12.75399 -12.44972 -12.11063 -11.94227 -11.74518 -11.70469 -11.36276 -11.04204 -10.81233 -10.79967 -10.65537 -10.39781 -10.00207 -9.96870 -9.92938 -9.80148 -9.67462 -9.28405 -8.65557 -8.57901 -8.41804 -6.84050 -5.69457 -3.04740 -0.13921 0.21118 1.48847 2.11710 3.22247 3.30928 3.40767 3.45876 3.48683 3.59762 3.73543 3.88055 4.24049 4.36327 4.45721 4.49728 4.55161 4.74584 4.83295 4.96661 5.06511 5.17416 5.28621 5.39583 5.43496 5.51137 5.54728 5.58472 5.72563 5.74989 5.90410 5.95155 5.98361 6.06171 6.12160 6.16386 6.31930 6.36763 6.46110 6.60861 6.68934 6.89785 7.42271 7.51775 7.57664 7.78834 7.85274 8.24936 8.41096 9.21392 9.82158 10.46634 11.41238 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.002701 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.200444 B =10362.473111 C =11106.956003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.080 0.920 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.090 0.910 17 N -0.704 5.704 18 C 0.557 3.443 19 O -0.527 6.527 20 C -0.098 4.098 21 C -0.113 4.113 22 C 0.123 3.877 23 F -0.120 7.120 24 C 0.110 3.890 25 N -0.469 5.469 26 C 0.138 3.862 27 C -0.172 4.172 28 C -0.046 4.046 29 C -0.089 4.089 30 C -0.037 4.037 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.023 0.977 36 H 0.252 0.748 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.395 0.605 40 H 0.147 0.853 41 H 0.164 0.836 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 8.411 17.244 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.108 0.892 17 N -0.354 5.354 18 C 0.343 3.657 19 O -0.404 6.404 20 C -0.102 4.102 21 C -0.134 4.134 22 C 0.102 3.898 23 F -0.098 7.098 24 C -0.013 4.013 25 N -0.176 5.176 26 C -0.035 4.035 27 C -0.192 4.192 28 C -0.072 4.072 29 C -0.091 4.091 30 C -0.057 4.057 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.230 0.770 40 H 0.165 0.835 41 H 0.181 0.819 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.193 8.422 17.053 21.579 hybrid contribution 0.950 -0.340 -0.439 1.101 sum -9.243 8.082 16.614 20.659 Atomic orbital electron populations 1.21708 0.94947 1.01873 1.01049 1.22628 0.94892 0.99549 0.96343 0.90389 1.21589 0.87640 0.95039 0.94287 1.44416 1.07886 1.79225 1.01762 1.19088 0.89281 1.38503 0.88947 0.90253 1.24831 0.97899 1.01701 0.96016 1.69975 1.24093 1.53279 1.09183 0.86051 0.82389 0.77776 0.79567 1.20500 1.21790 1.21740 1.21478 0.89870 1.00531 0.83393 1.22560 1.00554 0.92689 0.82624 0.89247 1.45863 1.73326 1.10301 1.05918 1.17924 0.77310 0.87596 0.82884 1.90807 1.49580 1.13941 1.86065 1.19833 1.03375 0.92340 0.94626 1.20955 1.00700 0.92811 0.98945 1.16846 1.03526 0.77879 0.91518 1.91545 1.93388 1.29025 1.95880 1.18871 1.00150 0.89928 0.92312 1.68039 1.12147 1.38684 0.98750 1.23066 0.92417 0.93750 0.94237 1.21976 1.01867 0.94645 1.00689 1.21586 0.93722 1.01135 0.90711 1.18593 1.02590 0.92883 0.95036 1.21509 0.93612 1.00913 0.89671 0.93082 0.92698 0.92514 0.93930 0.95961 0.93779 0.93118 0.93262 0.76957 0.83504 0.81882 0.83898 0.83365 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.31 37.15 0.35 -1.42 16 2 C -0.11 -1.85 3.25 -88.47 -0.29 -2.13 16 3 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16 4 C 0.14 2.81 6.70 -2.53 -0.02 2.80 16 5 N -0.61 -15.40 3.39 -170.07 -0.58 -15.97 16 6 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 7 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.43 10.31 55.49 0.57 -26.86 16 10 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.17 4.24 5.12 -3.06 -0.02 4.23 16 15 C 0.12 2.23 2.70 -66.09 -0.18 2.05 16 16 H 0.09 1.75 7.60 -51.93 -0.39 1.35 16 17 N -0.70 -11.03 5.08 -52.99 -0.27 -11.30 16 18 C 0.56 9.16 7.76 -12.36 -0.10 9.06 16 19 O -0.53 -10.54 16.03 5.31 0.09 -10.45 16 20 C -0.10 -1.31 5.87 -104.99 -0.62 -1.92 16 21 C -0.11 -1.34 9.41 -39.52 -0.37 -1.71 16 22 C 0.12 1.55 7.29 -39.38 -0.29 1.27 16 23 F -0.12 -1.60 17.10 2.25 0.04 -1.56 16 24 C 0.11 1.37 6.61 -84.72 -0.56 0.81 16 25 N -0.47 -5.57 10.19 -10.88 -0.11 -5.68 16 26 C 0.14 1.12 11.15 -17.46 -0.19 0.92 16 27 C -0.17 -1.12 10.03 -39.78 -0.40 -1.52 16 28 C -0.05 -0.36 9.89 -39.18 -0.39 -0.75 16 29 C -0.09 -0.97 5.74 -106.83 -0.61 -1.59 16 30 C -0.04 -0.44 9.34 -38.74 -0.36 -0.81 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.45 7.99 -51.93 -0.41 0.03 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.05 1.37 7.27 -51.93 -0.38 1.00 16 38 H 0.05 1.41 7.50 -51.93 -0.39 1.02 16 39 H 0.40 5.04 6.50 -40.82 -0.27 4.77 16 40 H 0.15 1.44 6.35 -52.49 -0.33 1.10 16 41 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.14 0.46 8.06 -52.48 -0.42 0.03 16 43 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.15 1.72 7.61 -52.48 -0.40 1.32 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -34.89 370.56 -9.48 -44.37 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.49 Total: 2.20 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -4.29 Total: 2.40 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.39 Total: -59.81 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.89 -9.48 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080626719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.179 kcal (2) G-P(sol) polarization free energy of solvation -34.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds