Wall clock time and date at job start Wed Apr 1 2020 02:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.36936 * 125.64929 * 204.09758 * 5 4 2 7 7 H 1.07994 * 119.99970 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99724 * 180.02562 * 6 5 4 9 9 N 1.31612 * 120.00298 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99602 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47193 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46920 * 119.99583 * 10 8 6 13 13 H 1.48505 * 109.47294 * 239.99760 * 10 8 6 14 14 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 15 15 C 1.54327 * 107.27336 * 358.94217 * 14 5 4 16 16 H 1.08993 * 110.72079 * 96.16743 * 15 14 5 17 17 N 1.46496 * 110.72108 * 219.44674 * 15 14 5 18 18 C 1.34779 * 119.99871 * 273.54072 * 17 15 14 19 19 O 1.21562 * 119.99913 * 0.02562 * 18 17 15 20 20 C 1.47777 * 120.00076 * 180.02562 * 18 17 15 21 21 C 1.40602 * 119.78839 * 0.02562 * 20 18 17 22 22 C 1.35918 * 120.88771 * 179.97438 * 21 20 18 23 23 F 1.35104 * 119.97003 * 180.02562 * 22 21 20 24 24 C 1.40961 * 120.06107 * 0.02562 * 22 21 20 25 25 N 1.33633 * 120.82769 * 179.97438 * 24 22 21 26 26 C 1.31108 * 121.39179 * 179.97438 * 25 24 22 27 27 C 1.39318 * 121.76461 * 0.03551 * 26 25 24 28 28 C 1.36572 * 119.90356 * 359.97438 * 27 26 25 29 29 C 1.40894 * 118.15857 * 359.97438 * 28 27 26 30 30 C 1.38539 * 119.78854 * 179.72831 * 20 18 17 31 31 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 32 32 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 33 33 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 34 34 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 35 35 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 36 36 H 0.97002 * 120.00251 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.88723 * 239.52626 * 14 5 4 38 38 H 1.09000 * 110.01436 * 118.43179 * 14 5 4 39 39 H 0.96996 * 120.00232 * 93.54399 * 17 15 14 40 40 H 1.07998 * 119.55775 * 0.02562 * 21 20 18 41 41 H 1.08005 * 119.11133 * 180.02562 * 26 25 24 42 42 H 1.08007 * 120.04588 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.91937 * 179.97438 * 28 27 26 44 44 H 1.08004 * 120.27012 * 359.97438 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4639 -1.5668 -1.6072 7 1 4.3333 -1.5118 -2.6777 8 6 5.6830 -1.9656 -1.0762 9 7 5.8424 -2.0321 0.2285 10 14 7.0972 -2.4077 -2.2137 11 1 6.6640 -2.2523 -3.6256 12 1 8.2474 -1.5072 -1.9465 13 1 7.5043 -3.8155 -1.9734 14 6 3.4674 -1.2742 0.6960 15 6 2.0861 -0.8079 1.2023 16 1 1.4467 -1.6631 1.4210 17 7 2.2286 0.0496 2.3814 18 6 2.3021 -0.5003 3.6097 19 8 2.2506 -1.7080 3.7390 20 6 2.4453 0.3647 4.7993 21 6 2.5039 1.7610 4.6446 22 6 2.6349 2.5776 5.7232 23 9 2.6888 3.9168 5.5532 24 6 2.7146 2.0285 7.0190 25 7 2.8441 2.8170 8.0901 26 6 2.9187 2.3182 9.3003 27 6 2.8679 0.9454 9.5322 28 6 2.7365 0.0819 8.4823 29 6 2.6556 0.6219 7.1834 30 6 2.5148 -0.2050 6.0602 31 1 -0.3634 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1721 -2.0837 35 1 1.4524 -1.6705 -1.4043 36 1 6.6943 -2.3104 0.5995 37 1 4.2425 -0.5998 1.0600 38 1 3.6661 -2.2884 1.0424 39 1 2.2701 1.0132 2.2782 40 1 2.4432 2.1904 3.6556 41 1 3.0225 2.9896 10.1399 42 1 2.9315 0.5646 10.5409 43 1 2.6959 -0.9852 8.6431 44 1 2.4643 -1.2775 6.1766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080626719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:28 Heat of formation + Delta-G solvation = -18.277666 kcal Electronic energy + Delta-G solvation = -29139.206892 eV Core-core repulsion = 24970.730184 eV Total energy + Delta-G solvation = -4168.476707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.01918 -41.99370 -40.99492 -39.28461 -37.72459 -35.73160 -34.51691 -34.25276 -32.23423 -31.97029 -30.95855 -29.52256 -27.41723 -26.23703 -25.26200 -25.03911 -23.27570 -22.64691 -21.62556 -21.43956 -19.60144 -19.19625 -18.90163 -18.44704 -17.56468 -17.26724 -16.99371 -16.91471 -16.55980 -16.03214 -15.93093 -15.65364 -15.55556 -15.22612 -15.03920 -14.76924 -14.46113 -14.18886 -14.07910 -13.85375 -13.76616 -13.43696 -13.33747 -13.05213 -12.90463 -12.75133 -12.72809 -12.60929 -12.15544 -12.05735 -11.86620 -11.65599 -11.54572 -11.46853 -11.13831 -10.76625 -10.67918 -10.18895 -9.98917 -9.33495 -8.93053 -7.85326 -5.23061 -0.97126 -0.58770 0.70489 1.18185 1.44019 1.45565 1.55963 1.97846 2.21093 2.48510 2.76382 2.87349 3.10498 3.32760 3.36182 3.52560 3.58791 3.67096 3.75950 3.85082 3.93250 4.03642 4.07519 4.13735 4.33880 4.43344 4.47081 4.56546 4.60928 4.71947 4.75372 4.85502 4.88691 4.94459 5.05999 5.08339 5.14648 5.16650 5.28672 5.34105 5.44729 5.49689 5.59727 5.61919 5.77015 6.16184 6.46030 6.71670 7.05126 7.13353 7.75167 8.38702 9.23920 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.002701 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.200444 B =10362.473111 C =11106.956003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 H 0.092 0.908 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.089 0.911 8 C -0.071 4.071 9 N -0.952 5.952 10 Si 0.980 3.020 11 H -0.261 1.261 12 H -0.292 1.292 13 H -0.295 1.295 14 C 0.188 3.812 15 C 0.137 3.863 16 H 0.080 0.920 17 N -0.695 5.695 18 C 0.558 3.442 19 O -0.571 6.571 20 C -0.120 4.120 21 C -0.106 4.106 22 C 0.104 3.896 23 F -0.129 7.129 24 C 0.097 3.903 25 N -0.509 5.509 26 C 0.144 3.856 27 C -0.157 4.157 28 C -0.048 4.048 29 C -0.102 4.102 30 C -0.026 4.026 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.028 0.972 36 H 0.244 0.756 37 H 0.016 0.984 38 H -0.007 1.007 39 H 0.411 0.589 40 H 0.162 0.838 41 H 0.199 0.801 42 H 0.187 0.813 43 H 0.177 0.823 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.626 9.587 18.619 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 H 0.110 0.890 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.107 0.893 8 C -0.264 4.264 9 N -0.601 5.601 10 Si 0.808 3.192 11 H -0.185 1.185 12 H -0.220 1.220 13 H -0.223 1.223 14 C 0.061 3.939 15 C 0.031 3.969 16 H 0.098 0.902 17 N -0.346 5.346 18 C 0.346 3.654 19 O -0.451 6.451 20 C -0.123 4.123 21 C -0.127 4.127 22 C 0.084 3.916 23 F -0.107 7.107 24 C -0.026 4.026 25 N -0.217 5.217 26 C -0.028 4.028 27 C -0.176 4.176 28 C -0.073 4.073 29 C -0.104 4.104 30 C -0.046 4.046 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.011 0.989 39 H 0.249 0.751 40 H 0.180 0.820 41 H 0.215 0.785 42 H 0.204 0.796 43 H 0.194 0.806 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.454 9.649 18.405 23.728 hybrid contribution 1.325 -0.718 -0.673 1.650 sum -10.129 8.931 17.732 22.289 Atomic orbital electron populations 1.21664 0.91525 1.02448 1.03085 1.22559 0.97434 0.98909 0.92557 0.89020 1.21868 0.85210 0.95848 0.96357 1.44741 1.09553 1.79221 1.01988 1.19542 0.90085 1.37364 0.89829 0.89346 1.25726 1.00711 1.02482 0.97438 1.70239 1.24063 1.54729 1.11074 0.84987 0.78905 0.76748 0.78563 1.18495 1.21951 1.22278 1.21109 0.92559 0.96703 0.83506 1.22126 0.96675 0.93612 0.84520 0.90222 1.45688 1.73037 1.10847 1.05046 1.18396 0.75910 0.87397 0.83719 1.90776 1.51652 1.15923 1.86744 1.19522 1.06671 0.92486 0.93671 1.20944 1.00120 0.92039 0.99608 1.16998 1.04803 0.77623 0.92207 1.91510 1.93657 1.29563 1.95976 1.19049 1.00267 0.90676 0.92571 1.68086 1.14379 1.39445 0.99830 1.23839 0.89561 0.95444 0.93908 1.22449 0.99217 0.93621 1.02301 1.22007 0.92830 1.02953 0.89560 1.18747 1.03319 0.92269 0.96109 1.21660 0.91965 1.01263 0.89704 0.91304 0.90336 0.92784 0.92650 0.95434 0.94716 0.96572 0.98891 0.75071 0.82015 0.78453 0.79559 0.80588 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.31 71.98 0.67 -2.26 16 2 C -0.09 -2.94 3.25 -9.40 -0.03 -2.97 16 3 H 0.09 2.63 8.00 -2.39 -0.02 2.61 16 4 C 0.13 5.19 6.70 86.86 0.58 5.77 16 5 N -0.63 -32.79 3.39 -691.98 -2.35 -35.14 16 6 C -0.24 -13.61 10.28 84.03 0.86 -12.74 16 7 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 8 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 9 N -0.95 -59.90 10.31 21.65 0.22 -59.68 16 10 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 14 C 0.19 9.74 5.12 86.73 0.44 10.19 16 15 C 0.14 5.19 2.70 46.18 0.12 5.32 16 16 H 0.08 3.22 7.60 -2.39 -0.02 3.20 16 17 N -0.70 -22.25 5.08 -439.84 -2.23 -24.49 16 18 C 0.56 19.09 7.76 86.77 0.67 19.76 16 19 O -0.57 -24.10 16.03 -3.91 -0.06 -24.17 16 20 C -0.12 -3.28 5.87 -20.11 -0.12 -3.40 16 21 C -0.11 -2.56 9.41 22.31 0.21 -2.35 16 22 C 0.10 2.67 7.29 22.40 0.16 2.83 16 23 F -0.13 -3.49 17.10 44.97 0.77 -2.72 16 24 C 0.10 2.37 6.61 40.40 0.27 2.63 16 25 N -0.51 -11.43 10.19 -188.32 -1.92 -13.35 16 26 C 0.14 1.88 11.15 85.06 0.95 2.83 16 27 C -0.16 -1.40 10.03 22.14 0.22 -1.18 16 28 C -0.05 -0.62 9.89 22.53 0.22 -0.40 16 29 C -0.10 -2.14 5.74 -21.29 -0.12 -2.26 16 30 C -0.03 -0.63 9.34 22.82 0.21 -0.41 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.03 1.07 7.99 -2.39 -0.02 1.05 16 36 H 0.24 15.00 8.31 -92.71 -0.77 14.22 16 37 H 0.02 0.93 7.27 -2.39 -0.02 0.92 16 38 H -0.01 -0.45 7.50 -2.39 -0.02 -0.46 16 39 H 0.41 10.37 6.50 -92.71 -0.60 9.77 16 40 H 0.16 3.16 6.35 -2.91 -0.02 3.14 16 41 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.19 0.08 8.06 -2.91 -0.02 0.06 16 43 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 44 H 0.16 3.57 7.61 -2.91 -0.02 3.54 16 Total: -1.00 -82.26 370.56 2.70 -79.56 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.44 Total: 13.35 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.80 Total: 17.66 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -6.28 Total: -132.65 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.77 Total: -2.72 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -82.26 2.70 -79.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080626719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.282 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds