Wall clock time and date at job start Wed Apr 1 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00075 * 2 1 4 4 C 1.53001 * 109.47229 * 264.48535 * 3 2 1 5 5 H 1.09000 * 112.95907 * 294.05972 * 4 3 2 6 6 C 1.53944 * 113.77168 * 65.73789 * 4 3 2 7 7 C 1.53950 * 86.28606 * 137.91300 * 6 4 3 8 8 N 1.47576 * 113.76986 * 162.38822 * 4 3 2 9 9 C 1.36937 * 134.49905 * 41.06173 * 8 4 3 10 10 H 1.08007 * 119.99426 * 353.95664 * 9 8 4 11 11 C 1.38811 * 120.00286 * 173.94995 * 9 8 4 12 12 N 1.31619 * 119.99865 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46900 * 59.99989 * 13 11 9 15 15 H 1.48491 * 109.47060 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46827 * 300.00488 * 13 11 9 17 17 C 1.34775 * 120.00234 * 179.97438 * 2 1 3 18 18 O 1.21612 * 119.99886 * 175.30427 * 17 2 1 19 19 C 1.47347 * 119.99911 * 355.58448 * 17 2 1 20 20 C 1.39191 * 120.76641 * 269.72487 * 19 17 2 21 21 F 1.35098 * 119.70798 * 359.97438 * 20 19 17 22 22 C 1.39285 * 120.58317 * 180.02562 * 20 19 17 23 23 C 1.36021 * 121.82667 * 0.02562 * 22 20 19 24 24 C 1.40367 * 120.53637 * 0.02562 * 23 22 20 25 25 C 1.40642 * 122.23298 * 180.02562 * 24 23 22 26 26 C 1.36315 * 118.64532 * 179.07206 * 25 24 23 27 27 N 1.32493 * 121.89137 * 0.92430 * 26 25 24 28 28 C 1.31376 * 122.68332 * 359.37052 * 27 26 25 29 29 C 1.39988 * 119.84406 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47016 * 270.00126 * 1 2 3 31 31 H 1.09004 * 109.47289 * 29.99849 * 1 2 3 32 32 H 1.08997 * 109.47238 * 150.00237 * 1 2 3 33 33 H 1.09004 * 109.46765 * 24.47563 * 3 2 1 34 34 H 1.08995 * 109.47516 * 144.47457 * 3 2 1 35 35 H 1.08993 * 113.74345 * 252.25576 * 6 4 3 36 36 H 1.09001 * 113.74092 * 23.46161 * 6 4 3 37 37 H 1.08994 * 113.76912 * 90.69908 * 7 6 4 38 38 H 1.09006 * 113.76633 * 221.98225 * 7 6 4 39 39 H 0.97000 * 119.99639 * 179.97438 * 12 11 9 40 40 H 1.07998 * 119.08231 * 179.97438 * 22 20 19 41 41 H 1.08009 * 119.72808 * 179.97438 * 23 22 20 42 42 H 1.08000 * 120.67776 * 359.95212 * 25 24 23 43 43 H 1.07996 * 119.04851 * 180.31706 * 26 25 24 44 44 H 1.07998 * 120.08382 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5726 1.6411 -1.4358 5 1 3.2852 0.9478 -1.8825 6 6 1.3607 1.9494 -2.3337 7 6 2.1917 3.1242 -2.8809 8 7 2.9373 3.0609 -1.6062 9 6 3.6706 3.9578 -0.8761 10 1 4.0457 3.6821 0.0985 11 6 3.9319 5.2211 -1.3885 12 7 3.4745 5.5571 -2.5760 13 14 4.9329 6.4442 -0.3928 14 1 6.2801 5.8798 -0.1252 15 1 5.0689 7.7105 -1.1563 16 1 4.2449 6.7146 0.8952 17 6 2.1389 -1.1672 0.0005 18 8 3.3519 -1.1689 -0.0857 19 6 1.4055 -2.4413 0.0993 20 6 1.1358 -3.0133 1.3393 21 9 1.5509 -2.3949 2.4664 22 6 0.4426 -4.2182 1.4282 23 6 0.0063 -4.8781 0.3217 24 6 0.2454 -4.3575 -0.9597 25 6 -0.1898 -5.0094 -2.1274 26 6 0.0655 -4.4286 -3.3339 27 7 0.7242 -3.2834 -3.4341 28 6 1.1644 -2.6243 -2.3864 29 6 0.9413 -3.1306 -1.1005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.5691 2.0510 0.4258 34 1 3.1034 1.1653 0.5971 35 1 1.1543 1.1759 -3.0732 36 1 0.4726 2.2574 -1.7817 37 1 2.7933 2.8681 -3.7529 38 1 1.6198 4.0426 -3.0136 39 1 3.6568 6.4400 -2.9339 40 1 0.2469 -4.6405 2.4028 41 1 -0.5277 -5.8106 0.4301 42 1 -0.7280 -5.9440 -2.0688 43 1 -0.2704 -4.9210 -4.2345 44 1 1.6965 -1.6935 -2.5167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085610282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:33 Heat of formation + Delta-G solvation = 46.177918 kcal Electronic energy + Delta-G solvation = -29976.562723 eV Core-core repulsion = 25810.881019 eV Total energy + Delta-G solvation = -4165.681703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -49.29611 -41.20293 -39.69299 -37.83976 -37.25710 -35.24768 -33.25978 -32.10782 -31.54946 -30.14643 -28.56742 -27.80989 -26.53705 -24.96948 -23.90936 -23.72202 -23.29019 -22.10847 -19.80253 -19.08360 -18.81845 -17.91054 -17.70847 -16.88640 -16.43735 -16.26562 -15.93088 -15.75868 -15.38091 -15.26823 -14.81066 -14.53353 -14.41101 -14.24981 -13.88247 -13.63731 -13.46665 -13.32769 -12.91595 -12.62696 -12.38156 -12.22473 -12.18973 -12.10213 -12.06541 -11.35907 -11.02778 -10.89409 -10.69354 -10.46838 -10.43925 -9.99318 -9.86174 -9.82522 -9.69638 -9.52247 -9.47320 -8.75514 -8.48787 -8.41883 -6.81940 -5.72240 -3.03823 -0.26030 0.36227 1.27048 2.40101 2.42458 2.96300 3.43426 3.48016 3.48930 3.55353 3.63520 3.98996 4.08815 4.16860 4.31261 4.42291 4.44296 4.51761 4.76926 5.04838 5.10924 5.14976 5.22889 5.23697 5.33522 5.35632 5.47257 5.51125 5.55897 5.57716 5.67291 5.78225 5.81305 5.96655 6.13263 6.19017 6.25926 6.27535 6.42716 6.56284 6.72612 6.84439 7.29248 7.37687 7.48180 7.61639 7.63012 8.02828 8.10035 9.09910 9.76265 10.66500 11.45555 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.003031 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.964386 B = 9236.831116 C =10350.270680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.593 5.593 3 C 0.118 3.882 4 C 0.129 3.871 5 H 0.049 0.951 6 C -0.161 4.161 7 C 0.166 3.834 8 N -0.601 5.601 9 C -0.223 4.223 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.285 1.285 17 C 0.557 3.443 18 O -0.514 6.514 19 C -0.119 4.119 20 C 0.132 3.868 21 F -0.124 7.124 22 C -0.129 4.129 23 C -0.069 4.069 24 C -0.033 4.033 25 C -0.150 4.150 26 C 0.081 3.919 27 N -0.473 5.473 28 C 0.153 3.847 29 C -0.069 4.069 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.253 0.747 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 -23.923 4.735 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.326 5.326 3 C -0.005 4.005 4 C 0.021 3.979 5 H 0.067 0.933 6 C -0.199 4.199 7 C 0.041 3.959 8 N -0.328 5.328 9 C -0.351 4.351 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.568 5.568 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.342 3.658 18 O -0.389 6.389 19 C -0.125 4.125 20 C 0.112 3.888 21 F -0.102 7.102 22 C -0.149 4.149 23 C -0.087 4.087 24 C -0.038 4.038 25 C -0.169 4.169 26 C -0.064 4.064 27 N -0.180 5.180 28 C -0.016 4.016 29 C -0.072 4.072 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.175 0.825 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.190 -23.296 3.881 27.050 hybrid contribution 0.602 0.415 1.571 1.733 sum -12.587 -22.881 5.452 26.677 Atomic orbital electron populations 1.21890 0.79457 1.03567 1.01844 1.47827 1.07077 1.05999 1.71665 1.21893 0.96829 0.82232 0.99525 1.22516 0.93967 0.88865 0.92527 0.93336 1.23801 0.97396 0.99647 0.99076 1.22121 0.90324 0.94874 0.88545 1.46093 1.60475 1.03883 1.22311 1.18977 1.26100 0.92156 0.97868 0.90381 1.24789 1.00897 0.97908 0.96693 1.69822 1.49453 1.20447 1.17044 0.86248 0.80231 0.80600 0.78983 1.21166 1.21625 1.21120 1.17803 0.87125 0.83029 0.77842 1.90888 1.12953 1.86686 1.48387 1.20988 1.01997 0.97569 0.91969 1.17651 0.97506 0.92533 0.81092 1.91577 1.87804 1.81968 1.48884 1.20805 0.99125 0.93854 1.01078 1.20859 0.98041 0.99659 0.90164 1.18106 0.97381 0.93691 0.94653 1.21934 1.01512 1.01237 0.92251 1.22365 0.94769 0.91568 0.97679 1.67591 1.08944 1.07871 1.33610 1.23172 0.93854 0.98523 0.86071 1.19514 0.99211 0.95013 0.93433 0.92577 0.89695 0.91642 0.89420 0.90533 0.93208 0.91007 0.95399 0.91616 0.93656 0.83617 0.83689 0.83878 0.82493 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.98 59.85 0.60 1.44 16 2 N -0.59 -8.87 2.78 -182.88 -0.51 -9.38 16 3 C 0.12 2.15 5.22 -4.04 -0.02 2.13 16 4 C 0.13 2.70 4.53 -66.87 -0.30 2.40 16 5 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.16 -3.00 7.26 -25.79 -0.19 -3.19 16 7 C 0.17 3.97 7.38 -2.84 -0.02 3.95 16 8 N -0.60 -15.49 3.58 -169.70 -0.61 -16.10 16 9 C -0.22 -6.31 10.51 -15.06 -0.16 -6.47 16 10 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.66 11.57 55.49 0.64 -27.02 16 13 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.56 8.95 5.67 -12.56 -0.07 8.88 16 18 O -0.51 -10.39 16.83 5.27 0.09 -10.30 16 19 C -0.12 -1.53 4.18 -102.75 -0.43 -1.95 16 20 C 0.13 1.48 7.29 -38.84 -0.28 1.20 16 21 F -0.12 -1.58 16.82 2.25 0.04 -1.54 16 22 C -0.13 -0.97 9.86 -39.99 -0.39 -1.36 16 23 C -0.07 -0.44 9.75 -39.58 -0.39 -0.83 16 24 C -0.03 -0.29 5.75 -106.85 -0.61 -0.90 16 25 C -0.15 -1.05 9.89 -39.37 -0.39 -1.44 16 26 C 0.08 0.70 11.07 -17.96 -0.20 0.50 16 27 N -0.47 -5.66 10.30 -13.23 -0.14 -5.79 16 28 C 0.15 1.92 10.73 -17.09 -0.18 1.74 16 29 C -0.07 -0.79 5.35 -104.81 -0.56 -1.35 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.91 6.53 -51.93 -0.34 0.57 16 32 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 33 H 0.09 1.57 8.03 -51.93 -0.42 1.15 16 34 H 0.08 1.54 7.66 -51.93 -0.40 1.14 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.23 6.90 -51.93 -0.36 0.87 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.69 7.47 -51.93 -0.39 1.31 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.15 0.42 8.06 -52.48 -0.42 0.00 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 43 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.17 2.24 7.37 -52.49 -0.39 1.85 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -35.05 374.09 -9.12 -44.18 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.55 Total: -1.62 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.70 Total: 4.45 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.61 Total: -58.30 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.05 -9.12 -44.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085610282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.357 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds