Wall clock time and date at job start Wed Apr 1 2020 02:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99756 * 2 1 4 4 C 1.52998 * 109.47104 * 267.24961 * 3 2 1 5 5 H 1.09003 * 112.96182 * 290.52846 * 4 3 2 6 6 C 1.53936 * 113.77003 * 62.20641 * 4 3 2 7 7 C 1.53944 * 86.29321 * 137.90753 * 6 4 3 8 8 N 1.47585 * 113.77120 * 158.84987 * 4 3 2 9 9 C 1.36931 * 134.48886 * 41.06516 * 8 4 3 10 10 H 1.08000 * 120.00260 * 4.31278 * 9 8 4 11 11 C 1.38813 * 120.00065 * 184.31080 * 9 8 4 12 12 N 1.31621 * 119.99584 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00471 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46915 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47120 * 120.00227 * 13 11 9 16 16 H 1.48496 * 109.47380 * 240.00060 * 13 11 9 17 17 C 1.34775 * 120.00005 * 179.97438 * 2 1 3 18 18 O 1.21611 * 120.00157 * 184.64245 * 17 2 1 19 19 C 1.47401 * 120.00059 * 4.64382 * 17 2 1 20 20 C 1.38958 * 120.65193 * 312.19228 * 19 17 2 21 21 C 1.38734 * 120.72883 * 179.97438 * 20 19 17 22 22 C 1.37504 * 121.68126 * 0.02562 * 21 20 19 23 23 F 1.35097 * 119.85375 * 179.97438 * 22 21 20 24 24 C 1.40587 * 120.29462 * 359.97438 * 22 21 20 25 25 C 1.40585 * 122.25149 * 180.02562 * 24 22 21 26 26 C 1.36313 * 118.65007 * 179.97438 * 25 24 22 27 27 N 1.32489 * 121.87748 * 0.03076 * 26 25 24 28 28 C 1.31369 * 122.68445 * 359.97078 * 27 26 25 29 29 C 1.40013 * 119.85101 * 0.28435 * 28 27 26 30 30 H 1.08998 * 109.47462 * 268.61354 * 1 2 3 31 31 H 1.08999 * 109.46930 * 28.61611 * 1 2 3 32 32 H 1.09007 * 109.47065 * 148.61053 * 1 2 3 33 33 H 1.09000 * 109.47531 * 27.25340 * 3 2 1 34 34 H 1.09007 * 109.46921 * 147.25051 * 3 2 1 35 35 H 1.09008 * 113.74659 * 252.25483 * 6 4 3 36 36 H 1.08999 * 113.74332 * 23.45284 * 6 4 3 37 37 H 1.09002 * 113.76614 * 90.69777 * 7 6 4 38 38 H 1.09001 * 113.77300 * 221.97951 * 7 6 4 39 39 H 0.97006 * 119.99962 * 179.97438 * 12 11 9 40 40 H 1.07991 * 119.63542 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.15693 * 180.02562 * 21 20 19 42 42 H 1.08006 * 120.67250 * 0.02562 * 25 24 22 43 43 H 1.08006 * 119.06210 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.07017 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5124 1.6758 -1.4408 5 1 3.2520 1.0294 -1.9134 6 6 1.2615 1.9216 -2.3036 7 6 2.0082 3.1479 -2.8592 8 7 2.7896 3.1160 -1.6050 9 6 3.4887 4.0470 -0.8842 10 1 4.0448 3.7458 -0.0087 11 6 3.4829 5.3778 -1.2787 12 7 2.8048 5.7449 -2.3454 13 14 4.4372 6.6477 -0.2959 14 1 5.1104 5.9837 0.8491 15 1 5.4569 7.2843 -1.1677 16 1 3.5034 7.6846 0.2120 17 6 2.1389 -1.1672 0.0005 18 8 3.3520 -1.1689 0.0858 19 6 1.4056 -2.4417 -0.1023 20 6 0.2968 -2.6876 0.6985 21 6 -0.3949 -3.8864 0.6027 22 6 -0.0154 -4.8707 -0.2792 23 9 -0.7155 -6.0244 -0.3415 24 6 1.0981 -4.6819 -1.1165 25 6 1.5220 -5.6599 -2.0331 26 6 2.6114 -5.3993 -2.8099 27 7 3.2757 -4.2563 -2.7225 28 6 2.9353 -3.2999 -1.8888 29 6 1.8329 -3.4723 -1.0430 30 1 -0.3634 -0.0249 1.0273 31 1 -0.3633 0.9021 -0.4922 32 1 -0.3633 -0.8773 -0.5353 33 1 1.5880 2.0402 0.4706 34 1 3.1277 1.1512 0.5560 35 1 1.0807 1.1443 -3.0462 36 1 0.3720 2.1721 -1.7256 37 1 2.6004 2.9354 -3.7493 38 1 1.3808 4.0326 -2.9671 39 1 2.8003 6.6750 -2.6210 40 1 -0.0305 -1.9370 1.4025 41 1 -1.2534 -4.0506 1.2370 42 1 0.9945 -6.5984 -2.1207 43 1 2.9425 -6.1458 -3.5166 44 1 3.5070 -2.3843 -1.8529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085779732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:40 Heat of formation + Delta-G solvation = 48.196779 kcal Electronic energy + Delta-G solvation = -29572.203408 eV Core-core repulsion = 25406.609250 eV Total energy + Delta-G solvation = -4165.594159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.45343 -41.18830 -39.75271 -37.91701 -37.24608 -35.32347 -33.05242 -32.14373 -31.61500 -30.32391 -28.39415 -27.85762 -26.65881 -24.87202 -24.12852 -23.58357 -23.31526 -22.04512 -19.82446 -19.16014 -18.73554 -18.11109 -17.70749 -16.90348 -16.60914 -16.23603 -15.99904 -15.58600 -15.46310 -15.29163 -14.82425 -14.59846 -14.30444 -14.15196 -14.02600 -13.86789 -13.52710 -13.20277 -12.89591 -12.69911 -12.55336 -12.32473 -12.21123 -12.02902 -11.84401 -11.43264 -11.04360 -10.89321 -10.71093 -10.46593 -10.43524 -9.99073 -9.83090 -9.78263 -9.72149 -9.61942 -9.57951 -8.78135 -8.49164 -8.34779 -6.86632 -5.74972 -3.08459 -0.31711 0.38984 1.21725 2.28778 2.67539 3.01561 3.39435 3.45725 3.47668 3.53158 3.61660 4.04056 4.04810 4.17323 4.27345 4.39749 4.47245 4.49818 4.85986 4.99508 5.04693 5.16939 5.22340 5.26688 5.29482 5.39178 5.44312 5.54412 5.57287 5.60841 5.63987 5.69624 5.78231 5.91782 6.13756 6.17475 6.23429 6.29502 6.39088 6.53612 6.68736 6.76497 7.25444 7.36008 7.45702 7.60319 7.66164 7.99983 8.08717 9.05826 9.72490 10.61468 11.41229 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.002633 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.612531 B =10630.958088 C =11118.638692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.116 3.884 4 C 0.129 3.871 5 H 0.047 0.953 6 C -0.158 4.158 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.221 4.221 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.554 3.446 18 O -0.524 6.524 19 C -0.091 4.091 20 C -0.067 4.067 21 C -0.136 4.136 22 C 0.118 3.882 23 F -0.128 7.128 24 C -0.052 4.052 25 C -0.155 4.155 26 C 0.086 3.914 27 N -0.477 5.477 28 C 0.161 3.839 29 C -0.060 4.060 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.023 0.977 38 H 0.077 0.923 39 H 0.252 0.748 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.159 0.841 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.945 -22.456 4.015 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.326 5.326 3 C -0.007 4.007 4 C 0.021 3.979 5 H 0.065 0.935 6 C -0.197 4.197 7 C 0.031 3.969 8 N -0.327 5.327 9 C -0.349 4.349 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.341 3.659 18 O -0.401 6.401 19 C -0.097 4.097 20 C -0.085 4.085 21 C -0.156 4.156 22 C 0.098 3.902 23 F -0.106 7.106 24 C -0.058 4.058 25 C -0.174 4.174 26 C -0.059 4.059 27 N -0.184 5.184 28 C -0.009 4.009 29 C -0.063 4.063 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.176 0.824 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.490 -22.144 3.520 24.348 hybrid contribution -0.377 0.323 0.976 1.095 sum -9.867 -21.822 4.496 24.367 Atomic orbital electron populations 1.22145 0.79640 1.04172 1.01629 1.47755 1.07084 1.06085 1.71630 1.21907 0.97217 0.82208 0.99350 1.22529 0.94296 0.88271 0.92759 0.93515 1.23770 0.97354 0.99436 0.99108 1.22295 0.91320 0.94846 0.88450 1.46060 1.61050 1.02017 1.23620 1.19066 1.23041 0.86751 1.06052 0.90300 1.24768 1.00653 0.96854 0.98088 1.69833 1.45083 1.16118 1.25681 0.86081 0.79154 0.81630 0.79127 1.20419 1.21800 1.21756 1.17967 0.87148 0.83147 0.77631 1.90849 1.13088 1.86948 1.49216 1.21029 0.96334 0.94489 0.97833 1.21313 0.92611 0.96679 0.97936 1.20987 1.02090 0.93064 0.99434 1.17585 0.91556 0.83245 0.97793 1.91518 1.77169 1.46660 1.95287 1.17992 0.95240 0.95091 0.97523 1.21837 0.99114 0.99676 0.96803 1.22347 0.91755 0.94375 0.97379 1.67621 1.29845 1.01201 1.19769 1.23493 0.91637 0.97851 0.87896 1.19502 0.96899 0.92427 0.97480 0.92381 0.89779 0.90998 0.89370 0.90171 0.93409 0.90883 0.95883 0.90451 0.93774 0.83406 0.83579 0.83848 0.82371 0.80566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.72 59.85 0.52 1.15 16 2 N -0.59 -7.94 2.75 -182.85 -0.50 -8.44 16 3 C 0.12 1.98 5.36 -4.04 -0.02 1.96 16 4 C 0.13 2.59 4.58 -66.87 -0.31 2.28 16 5 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 6 C -0.16 -2.86 7.09 -25.80 -0.18 -3.05 16 7 C 0.16 3.63 7.63 -2.85 -0.02 3.61 16 8 N -0.60 -15.02 3.58 -169.75 -0.61 -15.62 16 9 C -0.22 -6.09 10.51 -15.06 -0.16 -6.25 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -26.99 11.33 55.49 0.63 -26.37 16 13 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 17 C 0.55 7.89 6.78 -12.53 -0.08 7.81 16 18 O -0.52 -9.38 15.09 5.27 0.08 -9.30 16 19 C -0.09 -1.05 5.10 -102.82 -0.52 -1.57 16 20 C -0.07 -0.55 7.67 -39.13 -0.30 -0.85 16 21 C -0.14 -1.00 9.90 -39.67 -0.39 -1.39 16 22 C 0.12 1.07 7.28 -38.96 -0.28 0.78 16 23 F -0.13 -1.14 16.72 2.25 0.04 -1.10 16 24 C -0.05 -0.55 5.75 -106.80 -0.61 -1.17 16 25 C -0.15 -1.44 9.70 -39.39 -0.38 -1.82 16 26 C 0.09 0.86 11.07 -17.96 -0.20 0.66 16 27 N -0.48 -6.21 10.30 -13.23 -0.14 -6.35 16 28 C 0.16 2.16 10.53 -17.08 -0.18 1.98 16 29 C -0.06 -0.73 5.90 -104.82 -0.62 -1.35 16 30 H 0.06 0.41 7.28 -51.93 -0.38 0.03 16 31 H 0.08 0.82 6.10 -51.93 -0.32 0.51 16 32 H 0.07 0.57 5.95 -51.92 -0.31 0.26 16 33 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 34 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 35 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.07 1.22 6.50 -51.93 -0.34 0.88 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.97 6.99 -51.93 -0.36 1.61 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.15 0.90 6.29 -52.49 -0.33 0.56 16 41 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.14 0.98 7.81 -52.48 -0.41 0.57 16 43 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.18 2.56 6.43 -52.48 -0.34 2.23 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -33.21 365.25 -9.11 -42.32 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.25 Total: -0.17 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.84 Total: 2.49 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.62 Total: -56.78 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.21 -9.11 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085779732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.519 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds