Wall clock time and date at job start Wed Apr 1 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00528 * 2 1 4 4 C 1.53007 * 109.46934 * 276.65468 * 3 2 1 5 5 H 1.08997 * 112.96725 * 65.86820 * 4 3 2 6 6 C 1.53943 * 113.77079 * 294.18604 * 4 3 2 7 7 C 1.53941 * 86.29177 * 222.09556 * 6 4 3 8 8 N 1.47582 * 86.11849 * 23.60687 * 7 6 4 9 9 C 1.36943 * 134.49661 * 155.36613 * 8 7 6 10 10 H 1.08000 * 119.99721 * 186.14990 * 9 8 7 11 11 C 1.38813 * 119.99588 * 6.14422 * 9 8 7 12 12 N 1.31614 * 120.00014 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99616 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46986 * 60.00089 * 13 11 9 15 15 H 1.48502 * 109.46574 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47039 * 299.99885 * 13 11 9 17 17 C 1.34784 * 119.99744 * 180.28011 * 2 1 3 18 18 O 1.21611 * 119.99986 * 174.34314 * 17 2 1 19 19 C 1.47392 * 120.00008 * 354.33996 * 17 2 1 20 20 C 1.38952 * 120.65546 * 315.80194 * 19 17 2 21 21 C 1.38739 * 120.73026 * 179.71467 * 20 19 17 22 22 C 1.37494 * 121.67745 * 0.56699 * 21 20 19 23 23 F 1.35109 * 119.84962 * 179.69360 * 22 21 20 24 24 C 1.40588 * 120.29875 * 359.71881 * 22 21 20 25 25 C 1.40584 * 122.24850 * 179.97438 * 24 22 21 26 26 C 1.36318 * 118.64864 * 180.02562 * 25 24 22 27 27 N 1.32485 * 121.87180 * 0.02562 * 26 25 24 28 28 C 1.31363 * 122.69082 * 359.97438 * 27 26 25 29 29 C 1.40009 * 119.85001 * 0.02562 * 28 27 26 30 30 H 1.09005 * 109.46952 * 272.77384 * 1 2 3 31 31 H 1.08996 * 109.47000 * 32.76965 * 1 2 3 32 32 H 1.09001 * 109.47335 * 152.77511 * 1 2 3 33 33 H 1.09000 * 109.46951 * 36.65152 * 3 2 1 34 34 H 1.08991 * 109.47651 * 156.65345 * 3 2 1 35 35 H 1.09004 * 113.73782 * 336.44091 * 6 4 3 36 36 H 1.08994 * 113.74465 * 107.63881 * 6 4 3 37 37 H 1.08995 * 113.77366 * 137.90807 * 7 6 4 38 38 H 1.09001 * 113.76772 * 269.19252 * 7 6 4 39 39 H 0.97005 * 120.00160 * 179.97438 * 12 11 9 40 40 H 1.07996 * 119.63780 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.15847 * 180.26200 * 21 20 19 42 42 H 1.08002 * 120.67734 * 0.04691 * 25 24 22 43 43 H 1.08003 * 119.06205 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.07364 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3078 1.7938 -1.4329 5 1 1.3435 2.0677 -1.8609 6 6 3.1665 0.9084 -2.3540 7 6 3.7580 2.2213 -2.8983 8 7 3.3535 2.8199 -1.6114 9 6 3.7779 3.8955 -0.8777 10 1 3.3705 4.0721 0.1068 11 6 4.7318 4.7585 -1.3993 12 7 5.2280 4.5433 -2.5992 13 14 5.3113 6.2253 -0.3981 14 1 5.9143 5.7499 0.8729 15 1 6.3246 6.9847 -1.1738 16 1 4.1551 7.1076 -0.0980 17 6 2.1388 -1.1673 -0.0057 18 8 3.3505 -1.1694 -0.1095 19 6 1.4072 -2.4412 0.1140 20 6 0.3864 -2.5871 1.0453 21 6 -0.3072 -3.7837 1.1552 22 6 -0.0083 -4.8670 0.3631 23 9 -0.7036 -6.0166 0.5056 24 6 1.0180 -4.7840 -0.5942 25 6 1.3582 -5.8659 -1.4250 26 6 2.3666 -5.7046 -2.3280 27 7 3.0289 -4.5627 -2.4405 28 6 2.7638 -3.5125 -1.6973 29 6 1.7450 -3.5762 -0.7390 30 1 -0.3633 0.0497 1.0265 31 1 -0.3633 0.8641 -0.5562 32 1 -0.3634 -0.9138 -0.4701 33 1 1.6653 1.9955 0.6135 34 1 3.1963 1.1115 0.4072 35 1 3.8882 0.2901 -1.8201 36 1 2.5879 0.3480 -3.0882 37 1 4.8371 2.1884 -3.0477 38 1 3.2216 2.6212 -3.7588 39 1 5.8943 5.1466 -2.9639 40 1 0.1272 -1.7587 1.6878 41 1 -1.0989 -3.8678 1.8850 42 1 0.8311 -6.8055 -1.3496 43 1 2.6332 -6.5313 -2.9698 44 1 3.3305 -2.6021 -1.8251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085779733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:43 Heat of formation + Delta-G solvation = 47.840260 kcal Electronic energy + Delta-G solvation = -29684.700002 eV Core-core repulsion = 25519.090383 eV Total energy + Delta-G solvation = -4165.609619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.44944 -41.17234 -39.73877 -37.80540 -37.18473 -35.37593 -33.02775 -32.11779 -31.59207 -30.28532 -28.30999 -27.77787 -26.70228 -24.87571 -24.10956 -23.55944 -23.20539 -22.03433 -19.82413 -18.95055 -18.75867 -18.09292 -17.71864 -16.79533 -16.58154 -16.32784 -16.10085 -15.55793 -15.37354 -15.25059 -14.75389 -14.49794 -14.28577 -14.16244 -13.95289 -13.87187 -13.49679 -13.23480 -12.87952 -12.74358 -12.55518 -12.33154 -12.16192 -11.91059 -11.81241 -11.35413 -11.01037 -10.86790 -10.66977 -10.45933 -10.41092 -9.94160 -9.81834 -9.74326 -9.66688 -9.60376 -9.47075 -8.75503 -8.45221 -8.33432 -6.81564 -5.72125 -3.04125 -0.31173 0.40309 1.22820 2.29687 2.73493 3.02929 3.41944 3.45870 3.47529 3.53779 3.64185 4.05647 4.06125 4.18692 4.29976 4.41685 4.50064 4.51148 4.86819 4.97969 5.04786 5.20105 5.22655 5.28725 5.30220 5.39685 5.48669 5.57481 5.58411 5.60437 5.63181 5.70921 5.88020 5.94467 6.11004 6.17596 6.32157 6.38336 6.52147 6.65415 6.77799 6.83149 7.31822 7.37875 7.55716 7.65563 7.69125 8.03402 8.13825 9.08940 9.75821 10.66863 11.45434 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.002719 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.396035 B =10293.551288 C =11198.735550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.598 5.598 3 C 0.115 3.885 4 C 0.127 3.873 5 H 0.041 0.959 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.599 5.599 9 C -0.225 4.225 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.555 3.445 18 O -0.513 6.513 19 C -0.092 4.092 20 C -0.066 4.066 21 C -0.137 4.137 22 C 0.118 3.882 23 F -0.128 7.128 24 C -0.053 4.053 25 C -0.156 4.156 26 C 0.086 3.914 27 N -0.477 5.477 28 C 0.162 3.838 29 C -0.061 4.061 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.254 0.746 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.159 0.841 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.961 -20.527 5.820 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.331 5.331 3 C -0.007 4.007 4 C 0.019 3.981 5 H 0.058 0.942 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.325 5.325 9 C -0.353 4.353 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.565 5.565 13 Si 0.739 3.261 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.341 3.659 18 O -0.390 6.390 19 C -0.097 4.097 20 C -0.084 4.084 21 C -0.157 4.157 22 C 0.098 3.902 23 F -0.107 7.107 24 C -0.059 4.059 25 C -0.176 4.176 26 C -0.058 4.058 27 N -0.184 5.184 28 C -0.008 4.008 29 C -0.064 4.064 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.176 0.824 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.477 -20.328 5.146 24.927 hybrid contribution -0.840 0.675 1.179 1.597 sum -14.317 -19.653 6.326 25.124 Atomic orbital electron populations 1.21992 0.79841 1.03633 1.01682 1.47735 1.06866 1.06215 1.72243 1.21914 0.97766 0.81903 0.99146 1.22502 0.93131 0.89736 0.92714 0.94197 1.23858 0.99575 0.97744 0.98633 1.22089 0.99436 0.86334 0.88121 1.45956 1.35086 1.30506 1.20975 1.18926 1.18618 1.00732 0.97021 0.90470 1.24798 1.00023 0.98852 0.96583 1.69826 1.31859 1.38728 1.16105 0.86255 0.78156 0.82566 0.79098 1.21072 1.21603 1.21267 1.17929 0.87216 0.83003 0.77708 1.90854 1.13145 1.86683 1.48279 1.21055 0.97095 0.93801 0.97776 1.21291 0.92755 0.97416 0.96987 1.20981 1.02136 0.92046 1.00507 1.17594 0.92409 0.82896 0.97256 1.91521 1.77145 1.47322 1.94674 1.17998 0.96117 0.94787 0.96998 1.21831 0.99898 0.98794 0.97059 1.22356 0.91854 0.95375 0.96219 1.67634 1.26911 0.99746 1.24133 1.23591 0.91796 0.97492 0.87902 1.19531 0.97355 0.91813 0.97682 0.92441 0.90426 0.91028 0.91101 0.88608 0.89400 0.93966 0.91650 0.95679 0.93613 0.83490 0.83638 0.83899 0.82398 0.80225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 9.04 59.85 0.54 1.17 16 2 N -0.60 -7.86 2.79 -182.86 -0.51 -8.37 16 3 C 0.12 1.95 5.38 -4.04 -0.02 1.92 16 4 C 0.13 2.53 4.57 -66.86 -0.31 2.23 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.16 -3.21 7.26 -25.81 -0.19 -3.40 16 7 C 0.17 4.05 7.37 -2.98 -0.02 4.02 16 8 N -0.60 -15.27 3.57 -170.74 -0.61 -15.88 16 9 C -0.23 -6.25 10.51 -15.06 -0.16 -6.41 16 10 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 11 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 12 N -0.92 -27.67 11.55 55.49 0.64 -27.03 16 13 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 C 0.55 7.85 6.56 -12.53 -0.08 7.77 16 18 O -0.51 -9.17 12.98 5.27 0.07 -9.10 16 19 C -0.09 -1.05 5.00 -102.82 -0.51 -1.56 16 20 C -0.07 -0.54 7.82 -39.13 -0.31 -0.84 16 21 C -0.14 -1.00 9.90 -39.67 -0.39 -1.39 16 22 C 0.12 1.07 7.28 -38.97 -0.28 0.78 16 23 F -0.13 -1.14 16.72 2.25 0.04 -1.10 16 24 C -0.05 -0.56 5.75 -106.80 -0.61 -1.17 16 25 C -0.16 -1.46 9.70 -39.39 -0.38 -1.84 16 26 C 0.09 0.87 11.07 -17.96 -0.20 0.67 16 27 N -0.48 -6.25 10.30 -13.23 -0.14 -6.38 16 28 C 0.16 2.18 10.51 -17.09 -0.18 2.00 16 29 C -0.06 -0.74 5.90 -104.82 -0.62 -1.35 16 30 H 0.06 0.37 7.23 -51.93 -0.38 0.00 16 31 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.07 0.55 6.22 -51.93 -0.32 0.23 16 33 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 34 H 0.10 1.90 7.31 -51.93 -0.38 1.52 16 35 H 0.09 1.86 6.45 -51.93 -0.34 1.53 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.77 7.45 -51.93 -0.39 1.38 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.15 0.89 6.42 -52.49 -0.34 0.56 16 41 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.14 0.98 7.81 -52.49 -0.41 0.57 16 43 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 44 H 0.18 2.65 6.29 -52.49 -0.33 2.32 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -33.66 365.99 -9.22 -42.88 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.38 Total: -0.07 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -3.82 Total: 2.35 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.62 Total: -57.66 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.66 -9.22 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085779733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.715 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds