Wall clock time and date at job start Wed Apr 1 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99793 * 2 1 4 4 C 1.52992 * 109.47436 * 84.31811 * 3 2 1 5 5 H 1.08998 * 112.96782 * 295.21400 * 4 3 2 6 6 C 1.53947 * 113.76651 * 66.88924 * 4 3 2 7 7 C 1.53950 * 86.29381 * 137.91123 * 6 4 3 8 8 N 1.47578 * 113.77346 * 163.52871 * 4 3 2 9 9 C 1.36941 * 134.49158 * 41.07296 * 8 4 3 10 10 H 1.07999 * 119.99637 * 4.79197 * 9 8 4 11 11 C 1.38814 * 120.00104 * 184.79196 * 9 8 4 12 12 N 1.31616 * 119.99892 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99857 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47016 * 90.00088 * 13 11 9 15 15 H 1.48501 * 109.46855 * 210.00349 * 13 11 9 16 16 H 1.48499 * 109.47088 * 329.99854 * 13 11 9 17 17 C 1.34776 * 120.00600 * 180.02562 * 2 1 3 18 18 O 1.21595 * 120.00386 * 182.75533 * 17 2 1 19 19 C 1.47446 * 119.99784 * 2.74898 * 17 2 1 20 20 C 1.38716 * 120.31718 * 24.20268 * 19 17 2 21 21 C 1.39094 * 120.69601 * 179.97438 * 20 19 17 22 22 F 1.35102 * 119.49589 * 179.97438 * 21 20 19 23 23 C 1.36531 * 121.00470 * 359.97438 * 21 20 19 24 24 C 1.40405 * 120.07270 * 359.97438 * 23 21 20 25 25 C 1.40823 * 121.24152 * 180.02562 * 24 23 21 26 26 C 1.36627 * 118.15364 * 179.28039 * 25 24 23 27 27 C 1.39241 * 119.90927 * 0.68380 * 26 25 24 28 28 N 1.31218 * 121.69483 * 359.52979 * 27 26 25 29 29 C 1.33365 * 121.36066 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47487 * 83.83595 * 1 2 3 31 31 H 1.08998 * 109.47464 * 323.83056 * 1 2 3 32 32 H 1.09006 * 109.46805 * 203.83829 * 1 2 3 33 33 H 1.08997 * 109.47378 * 204.32634 * 3 2 1 34 34 H 1.09006 * 109.47396 * 324.32001 * 3 2 1 35 35 H 1.09003 * 113.74397 * 252.25785 * 6 4 3 36 36 H 1.09001 * 113.74647 * 23.45735 * 6 4 3 37 37 H 1.09002 * 113.76956 * 90.69104 * 7 6 4 38 38 H 1.08996 * 113.76794 * 221.98225 * 7 6 4 39 39 H 0.97002 * 119.99505 * 179.97438 * 12 11 9 40 40 H 1.08002 * 119.64787 * 0.02562 * 20 19 17 41 41 H 1.08006 * 119.96395 * 179.97438 * 23 21 20 42 42 H 1.07996 * 120.92021 * 359.95007 * 25 24 23 43 43 H 1.07998 * 120.04874 * 180.18869 * 26 25 24 44 44 H 1.08000 * 119.15390 * 179.49813 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3287 1.7819 1.4353 5 1 1.3691 2.0342 1.8863 6 6 3.2223 0.9029 2.3291 7 6 3.8019 2.2207 2.8744 8 7 3.3573 2.8270 1.6017 9 6 3.7438 3.9183 0.8702 10 1 3.1926 4.1972 -0.0157 11 6 4.8439 4.6659 1.2674 12 7 5.5158 4.3257 2.3467 13 14 5.3714 6.1541 0.2691 14 1 4.6775 7.3636 0.7793 15 1 6.8400 6.3371 0.3918 16 1 5.0163 5.9444 -1.1575 17 6 2.1390 -1.1671 -0.0005 18 8 3.3538 -1.1677 0.0501 19 6 1.4031 -2.4433 -0.0623 20 6 0.1286 -2.4910 -0.6080 21 6 -0.5724 -3.6907 -0.6707 22 9 -1.8124 -3.7093 -1.2067 23 6 -0.0265 -4.8498 -0.1990 24 6 1.2615 -4.8445 0.3599 25 6 1.8485 -6.0256 0.8534 26 6 3.1109 -5.9508 1.3705 27 6 3.7732 -4.7266 1.4109 28 7 3.2200 -3.6280 0.9540 29 6 1.9944 -3.6350 0.4280 30 1 -0.3634 0.1103 -1.0217 31 1 -0.3634 0.8296 0.6065 32 1 -0.3633 -0.9401 0.4154 33 1 3.1900 1.1153 -0.4233 34 1 1.6561 2.0008 -0.5994 35 1 2.6694 0.3265 3.0709 36 1 3.9421 0.3013 1.7740 37 1 3.2756 2.6036 3.7488 38 1 4.8842 2.2049 3.0024 39 1 6.2848 4.8479 2.6240 40 1 -0.3236 -1.5873 -0.9888 41 1 -0.5861 -5.7719 -0.2557 42 1 1.3196 -6.9664 0.8142 43 1 3.5915 -6.8384 1.7545 44 1 4.7676 -4.6800 1.8297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085852857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:49 Heat of formation + Delta-G solvation = 73.520331 kcal Electronic energy + Delta-G solvation = -29741.461643 eV Core-core repulsion = 25576.965596 eV Total energy + Delta-G solvation = -4164.496047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -49.31323 -41.31323 -39.61911 -37.64532 -36.94720 -35.23404 -33.79780 -32.08902 -31.09367 -30.30937 -28.29481 -27.72143 -26.87906 -24.73696 -23.91401 -23.57485 -23.13432 -21.94319 -19.69724 -19.14299 -18.84814 -17.76043 -17.44745 -16.82796 -16.47616 -16.08044 -15.97633 -15.58963 -15.46870 -15.06732 -14.60721 -14.55645 -14.39298 -13.91499 -13.75218 -13.54021 -13.43878 -13.38010 -12.84800 -12.71420 -12.44681 -12.22381 -12.04799 -11.73075 -11.32416 -11.25135 -10.93782 -10.81546 -10.76065 -10.56441 -10.37242 -9.91104 -9.72384 -9.59378 -9.47591 -9.28734 -9.05914 -8.67382 -8.59172 -8.26925 -6.75146 -5.65171 -2.98451 -0.24661 0.36406 1.43515 2.26681 3.00719 3.20792 3.44905 3.49293 3.51793 3.70120 3.84887 3.94115 4.10129 4.30761 4.46249 4.52518 4.54265 4.56923 4.85492 4.91664 5.09133 5.22318 5.25743 5.30337 5.34119 5.48281 5.50431 5.54010 5.62852 5.64756 5.71298 5.81907 5.97416 6.05623 6.10350 6.22150 6.39065 6.49817 6.66142 6.78659 6.85921 6.94820 7.39248 7.53665 7.66363 7.74941 7.76303 8.10746 8.44124 9.14180 9.81540 10.73088 11.50962 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.002892 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.915013 B = 9679.761879 C =10804.960885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.605 5.605 3 C 0.119 3.881 4 C 0.128 3.872 5 H 0.040 0.960 6 C -0.154 4.154 7 C 0.155 3.845 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.077 0.923 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.909 3.091 14 H -0.290 1.290 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.551 3.449 18 O -0.483 6.483 19 C -0.064 4.064 20 C -0.126 4.126 21 C 0.097 3.903 22 F -0.134 7.134 23 C -0.117 4.117 24 C -0.088 4.088 25 C -0.062 4.062 26 C -0.165 4.165 27 C 0.134 3.866 28 N -0.432 5.432 29 C 0.152 3.848 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.089 0.911 37 H 0.020 0.980 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.171 0.829 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.631 -23.692 -3.758 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.339 5.339 3 C -0.004 4.004 4 C 0.020 3.980 5 H 0.057 0.943 6 C -0.192 4.192 7 C 0.030 3.970 8 N -0.326 5.326 9 C -0.349 4.349 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.218 1.218 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.337 3.663 18 O -0.356 6.356 19 C -0.068 4.068 20 C -0.146 4.146 21 C 0.077 3.923 22 F -0.112 7.112 23 C -0.137 4.137 24 C -0.091 4.091 25 C -0.088 4.088 26 C -0.185 4.185 27 C -0.039 4.039 28 N -0.138 5.138 29 C 0.029 3.971 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.188 0.812 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.388 -22.499 -3.839 25.969 hybrid contribution -0.705 0.111 -0.525 0.886 sum -13.092 -22.388 -4.365 26.300 Atomic orbital electron populations 1.22466 0.80855 1.03867 1.01390 1.47713 1.06364 1.06399 1.73449 1.21855 0.97737 0.81894 0.98927 1.22511 0.93179 0.89305 0.93010 0.94299 1.23781 0.99443 0.97362 0.98621 1.22309 1.00133 0.86660 0.87898 1.45948 1.36434 1.28301 1.21926 1.18974 1.08657 1.02047 1.05244 0.90515 1.24772 0.97927 0.99643 0.98051 1.69835 1.21056 1.40660 1.24977 0.86160 0.77755 0.82682 0.79401 1.21794 1.21676 1.20654 1.17746 0.87441 0.82550 0.78574 1.90877 1.12381 1.86068 1.46251 1.19868 0.93341 0.93845 0.99744 1.22349 0.94073 0.98737 0.99476 1.17160 0.81483 0.94300 0.99321 1.91542 1.38691 1.97248 1.83750 1.21033 0.95121 0.98099 0.99420 1.18501 0.94807 0.94639 1.01131 1.21406 0.95130 0.97090 0.95191 1.22024 0.95743 0.99986 1.00754 1.23250 0.99997 0.87395 0.93262 1.68291 1.08639 1.29663 1.07214 1.18626 0.90890 0.91085 0.96541 0.92119 0.90661 0.89927 0.88658 0.91328 0.94271 0.89251 0.96237 0.90542 0.93772 0.81221 0.83733 0.84030 0.84121 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 8.73 59.84 0.52 1.12 16 2 N -0.60 -9.24 2.81 -182.85 -0.51 -9.75 16 3 C 0.12 2.22 5.40 -4.05 -0.02 2.20 16 4 C 0.13 2.74 4.56 -66.87 -0.30 2.43 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.15 -3.37 7.27 -25.79 -0.19 -3.56 16 7 C 0.16 3.96 7.64 -2.84 -0.02 3.94 16 8 N -0.60 -15.96 3.58 -169.75 -0.61 -16.57 16 9 C -0.22 -6.34 10.51 -15.06 -0.16 -6.50 16 10 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.22 11.32 55.49 0.63 -27.59 16 13 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.55 9.26 7.10 -12.51 -0.09 9.17 16 18 O -0.48 -10.07 13.41 5.28 0.07 -10.00 16 19 C -0.06 -0.87 5.58 -104.62 -0.58 -1.45 16 20 C -0.13 -1.30 7.47 -39.09 -0.29 -1.59 16 21 C 0.10 0.90 7.22 -39.88 -0.29 0.61 16 22 F -0.13 -1.21 17.24 2.25 0.04 -1.18 16 23 C -0.12 -0.98 9.71 -39.38 -0.38 -1.36 16 24 C -0.09 -0.89 5.74 -106.83 -0.61 -1.50 16 25 C -0.06 -0.46 9.89 -39.19 -0.39 -0.85 16 26 C -0.17 -1.23 10.03 -39.79 -0.40 -1.63 16 27 C 0.13 1.41 11.15 -17.44 -0.19 1.22 16 28 N -0.43 -6.41 8.71 -10.76 -0.09 -6.50 16 29 C 0.15 2.06 6.59 -84.57 -0.56 1.51 16 30 H 0.06 0.50 7.30 -51.93 -0.38 0.12 16 31 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.08 0.75 4.82 -51.93 -0.25 0.50 16 33 H 0.10 2.09 7.29 -51.93 -0.38 1.71 16 34 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 2.13 6.56 -51.93 -0.34 1.79 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 2.16 6.97 -51.93 -0.36 1.80 16 39 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.17 1.44 4.28 -52.49 -0.22 1.22 16 41 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -36.27 364.30 -9.35 -45.62 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.28 Total: -0.66 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -4.05 Total: 3.44 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.59 Total: -60.41 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.27 -9.35 -45.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085852857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.138 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds