Wall clock time and date at job start Wed Apr 1 2020 02:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99793 * 2 1 4 4 C 1.52992 * 109.47436 * 84.31811 * 3 2 1 5 5 H 1.08998 * 112.96782 * 295.21400 * 4 3 2 6 6 C 1.53947 * 113.76651 * 66.88924 * 4 3 2 7 7 C 1.53950 * 86.29381 * 137.91123 * 6 4 3 8 8 N 1.47578 * 113.77346 * 163.52871 * 4 3 2 9 9 C 1.36941 * 134.49158 * 41.07296 * 8 4 3 10 10 H 1.07999 * 119.99637 * 4.79197 * 9 8 4 11 11 C 1.38814 * 120.00104 * 184.79196 * 9 8 4 12 12 N 1.31616 * 119.99892 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99857 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47016 * 90.00088 * 13 11 9 15 15 H 1.48501 * 109.46855 * 210.00349 * 13 11 9 16 16 H 1.48499 * 109.47088 * 329.99854 * 13 11 9 17 17 C 1.34776 * 120.00600 * 180.02562 * 2 1 3 18 18 O 1.21595 * 120.00386 * 182.75533 * 17 2 1 19 19 C 1.47446 * 119.99784 * 2.74898 * 17 2 1 20 20 C 1.38716 * 120.31718 * 24.20268 * 19 17 2 21 21 C 1.39094 * 120.69601 * 179.97438 * 20 19 17 22 22 F 1.35102 * 119.49589 * 179.97438 * 21 20 19 23 23 C 1.36531 * 121.00470 * 359.97438 * 21 20 19 24 24 C 1.40405 * 120.07270 * 359.97438 * 23 21 20 25 25 C 1.40823 * 121.24152 * 180.02562 * 24 23 21 26 26 C 1.36627 * 118.15364 * 179.28039 * 25 24 23 27 27 C 1.39241 * 119.90927 * 0.68380 * 26 25 24 28 28 N 1.31218 * 121.69483 * 359.52979 * 27 26 25 29 29 C 1.33365 * 121.36066 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47487 * 83.83595 * 1 2 3 31 31 H 1.08998 * 109.47464 * 323.83056 * 1 2 3 32 32 H 1.09006 * 109.46805 * 203.83829 * 1 2 3 33 33 H 1.08997 * 109.47378 * 204.32634 * 3 2 1 34 34 H 1.09006 * 109.47396 * 324.32001 * 3 2 1 35 35 H 1.09003 * 113.74397 * 252.25785 * 6 4 3 36 36 H 1.09001 * 113.74647 * 23.45735 * 6 4 3 37 37 H 1.09002 * 113.76956 * 90.69104 * 7 6 4 38 38 H 1.08996 * 113.76794 * 221.98225 * 7 6 4 39 39 H 0.97002 * 119.99505 * 179.97438 * 12 11 9 40 40 H 1.08002 * 119.64787 * 0.02562 * 20 19 17 41 41 H 1.08006 * 119.96395 * 179.97438 * 23 21 20 42 42 H 1.07996 * 120.92021 * 359.95007 * 25 24 23 43 43 H 1.07998 * 120.04874 * 180.18869 * 26 25 24 44 44 H 1.08000 * 119.15390 * 179.49813 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3287 1.7819 1.4353 5 1 1.3691 2.0342 1.8863 6 6 3.2223 0.9029 2.3291 7 6 3.8019 2.2207 2.8744 8 7 3.3573 2.8270 1.6017 9 6 3.7438 3.9183 0.8702 10 1 3.1926 4.1972 -0.0157 11 6 4.8439 4.6659 1.2674 12 7 5.5158 4.3257 2.3467 13 14 5.3714 6.1541 0.2691 14 1 4.6775 7.3636 0.7793 15 1 6.8400 6.3371 0.3918 16 1 5.0163 5.9444 -1.1575 17 6 2.1390 -1.1671 -0.0005 18 8 3.3538 -1.1677 0.0501 19 6 1.4031 -2.4433 -0.0623 20 6 0.1286 -2.4910 -0.6080 21 6 -0.5724 -3.6907 -0.6707 22 9 -1.8124 -3.7093 -1.2067 23 6 -0.0265 -4.8498 -0.1990 24 6 1.2615 -4.8445 0.3599 25 6 1.8485 -6.0256 0.8534 26 6 3.1109 -5.9508 1.3705 27 6 3.7732 -4.7266 1.4109 28 7 3.2200 -3.6280 0.9540 29 6 1.9944 -3.6350 0.4280 30 1 -0.3634 0.1103 -1.0217 31 1 -0.3634 0.8296 0.6065 32 1 -0.3633 -0.9401 0.4154 33 1 3.1900 1.1153 -0.4233 34 1 1.6561 2.0008 -0.5994 35 1 2.6694 0.3265 3.0709 36 1 3.9421 0.3013 1.7740 37 1 3.2756 2.6036 3.7488 38 1 4.8842 2.2049 3.0024 39 1 6.2848 4.8479 2.6240 40 1 -0.3236 -1.5873 -0.9888 41 1 -0.5861 -5.7719 -0.2557 42 1 1.3196 -6.9664 0.8142 43 1 3.5915 -6.8384 1.7545 44 1 4.7676 -4.6800 1.8297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085852857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:48 Heat of formation + Delta-G solvation = 50.209864 kcal Electronic energy + Delta-G solvation = -29742.472461 eV Core-core repulsion = 25576.965596 eV Total energy + Delta-G solvation = -4165.506865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.98124 -42.15297 -40.81328 -39.37748 -37.84809 -36.47934 -34.60681 -34.18668 -31.98114 -31.09532 -29.86019 -29.58840 -27.94083 -25.64556 -25.26916 -24.86390 -24.44486 -23.32071 -20.96532 -20.58552 -19.92806 -18.71187 -18.52465 -18.30151 -17.57445 -17.15782 -17.00922 -16.70371 -16.56825 -16.25531 -15.85685 -15.79429 -15.42401 -15.36619 -14.95596 -14.87101 -14.43671 -14.13278 -14.00770 -13.91768 -13.69905 -13.47177 -13.38223 -13.04408 -12.93360 -12.54816 -12.51057 -12.44283 -12.32512 -12.05754 -11.79396 -11.61779 -11.55842 -11.30753 -10.97585 -10.82056 -10.21841 -9.79621 -9.65854 -9.32946 -8.87976 -7.86676 -5.21779 -0.99093 -0.36146 0.70750 1.43932 1.47542 1.50761 1.55637 1.83355 2.13254 2.49322 2.95193 3.04970 3.18411 3.28579 3.35451 3.45701 3.61980 3.76044 3.82365 3.92629 4.00793 4.10361 4.19927 4.24805 4.32029 4.39636 4.46632 4.54558 4.58044 4.61374 4.73072 4.75364 4.81096 4.84236 4.86659 5.02401 5.03194 5.07749 5.18087 5.24602 5.43266 5.50204 5.54202 5.72590 5.76045 5.95740 6.39319 6.91901 7.01959 7.23688 7.62979 8.59862 9.30067 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.002892 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.915013 B = 9679.761879 C =10804.960885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.604 5.604 3 C 0.134 3.866 4 C 0.136 3.864 5 H 0.063 0.937 6 C -0.130 4.130 7 C 0.151 3.849 8 N -0.627 5.627 9 C -0.228 4.228 10 H 0.089 0.911 11 C -0.073 4.073 12 N -0.957 5.957 13 Si 0.980 3.020 14 H -0.284 1.284 15 H -0.298 1.298 16 H -0.266 1.266 17 C 0.547 3.453 18 O -0.540 6.540 19 C -0.103 4.103 20 C -0.104 4.104 21 C 0.085 3.915 22 F -0.130 7.130 23 C -0.088 4.088 24 C -0.102 4.102 25 C -0.047 4.047 26 C -0.163 4.163 27 C 0.123 3.877 28 N -0.499 5.499 29 C 0.127 3.873 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.021 0.979 38 H 0.039 0.961 39 H 0.246 0.754 40 H 0.187 0.813 41 H 0.185 0.815 42 H 0.188 0.812 43 H 0.180 0.820 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.109 -26.336 -4.856 31.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.337 5.337 3 C 0.010 3.990 4 C 0.030 3.970 5 H 0.080 0.920 6 C -0.168 4.168 7 C 0.026 3.974 8 N -0.354 5.354 9 C -0.356 4.356 10 H 0.106 0.894 11 C -0.266 4.266 12 N -0.606 5.606 13 Si 0.808 3.192 14 H -0.211 1.211 15 H -0.224 1.224 16 H -0.190 1.190 17 C 0.335 3.665 18 O -0.417 6.417 19 C -0.107 4.107 20 C -0.124 4.124 21 C 0.066 3.934 22 F -0.108 7.108 23 C -0.108 4.108 24 C -0.105 4.105 25 C -0.073 4.073 26 C -0.182 4.182 27 C -0.049 4.049 28 N -0.207 5.207 29 C 0.004 3.996 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.204 0.796 41 H 0.202 0.798 42 H 0.205 0.795 43 H 0.197 0.803 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.948 -25.171 -4.958 30.208 hybrid contribution 0.319 0.749 -0.153 0.828 sum -15.629 -24.423 -5.111 29.442 Atomic orbital electron populations 1.22811 0.77531 1.05131 1.03665 1.47723 1.08253 1.04718 1.72986 1.21380 0.96784 0.83981 0.96898 1.22654 0.92707 0.86985 0.94678 0.92014 1.23454 0.98967 0.95737 0.98645 1.22217 0.98106 0.88905 0.88199 1.46266 1.38068 1.28824 1.22194 1.19436 1.08535 1.02155 1.05489 0.89371 1.25695 0.98372 1.03022 0.99462 1.70052 1.21572 1.42021 1.26931 0.85050 0.76601 0.78990 0.78540 1.21090 1.22430 1.19047 1.18337 0.87097 0.83848 0.77168 1.90835 1.14935 1.86979 1.48962 1.19590 0.94849 0.92415 1.03844 1.22443 0.92564 1.00079 0.97301 1.17107 0.81749 0.94265 1.00324 1.91560 1.38290 1.97206 1.83787 1.21443 0.94041 0.99213 0.96086 1.18752 0.95441 0.94393 1.01884 1.21958 0.94898 0.97676 0.92751 1.22351 0.95904 0.99735 1.00199 1.23659 1.00614 0.88148 0.92452 1.68211 1.10328 1.32154 1.09961 1.18907 0.91116 0.92419 0.97129 0.89118 0.89835 0.88360 0.92713 0.89430 0.91948 0.91655 0.96151 0.94231 0.94484 0.79645 0.79818 0.79465 0.80269 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.92 8.73 127.77 1.12 2.03 16 2 N -0.60 -18.36 2.81 -850.67 -2.39 -20.75 16 3 C 0.13 5.08 5.40 86.38 0.47 5.55 16 4 C 0.14 5.89 4.56 45.09 0.21 6.10 16 5 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 6 C -0.13 -5.92 7.27 31.25 0.23 -5.70 16 7 C 0.15 8.11 7.64 86.44 0.66 8.77 16 8 N -0.63 -34.35 3.58 -690.96 -2.48 -36.82 16 9 C -0.23 -13.30 10.51 84.03 0.88 -12.42 16 10 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 11 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 12 N -0.96 -61.35 11.32 21.65 0.25 -61.11 16 13 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 14 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 15 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 C 0.55 19.14 7.10 86.67 0.62 19.76 16 18 O -0.54 -24.39 13.41 -4.01 -0.05 -24.44 16 19 C -0.10 -2.81 5.58 -19.86 -0.11 -2.93 16 20 C -0.10 -1.94 7.47 22.59 0.17 -1.77 16 21 C 0.08 1.30 7.22 22.08 0.16 1.46 16 22 F -0.13 -1.87 17.24 44.97 0.78 -1.09 16 23 C -0.09 -1.12 9.71 22.40 0.22 -0.90 16 24 C -0.10 -1.80 5.74 -21.29 -0.12 -1.92 16 25 C -0.05 -0.51 9.89 22.53 0.22 -0.29 16 26 C -0.16 -1.98 10.03 22.13 0.22 -1.76 16 27 C 0.12 2.63 11.15 85.03 0.95 3.57 16 28 N -0.50 -15.58 8.71 -187.95 -1.64 -17.21 16 29 C 0.13 3.47 6.59 40.61 0.27 3.73 16 30 H 0.09 1.17 7.30 -2.39 -0.02 1.16 16 31 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 32 H 0.10 1.54 4.82 -2.38 -0.01 1.53 16 33 H 0.05 2.54 7.29 -2.39 -0.02 2.52 16 34 H 0.09 2.96 8.11 -2.38 -0.02 2.94 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.06 3.34 6.56 -2.39 -0.02 3.32 16 37 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 2.39 6.97 -2.39 -0.02 2.38 16 39 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.19 2.65 4.28 -2.91 -0.01 2.64 16 41 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.19 0.29 8.06 -2.91 -0.02 0.27 16 43 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 44 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -86.58 364.30 4.15 -82.43 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.05 Total: 9.81 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 6.61 Total: 19.37 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -6.26 Total: -135.89 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.78 Total: -1.09 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -86.58 4.15 -82.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085852857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.637 kcal (2) G-P(sol) polarization free energy of solvation -86.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds