Wall clock time and date at job start Wed Apr 1 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00076 * 2 1 4 4 C 1.53005 * 109.46690 * 275.75087 * 3 2 1 5 5 H 1.08997 * 112.96683 * 48.77722 * 4 3 2 6 6 C 1.53942 * 113.76836 * 180.45382 * 4 3 2 7 7 C 1.53944 * 86.29196 * 137.90630 * 6 4 3 8 8 N 1.47578 * 113.76858 * 276.94732 * 4 3 2 9 9 C 1.36937 * 134.49466 * 41.06690 * 8 4 3 10 10 H 1.08002 * 119.99869 * 242.46754 * 9 8 4 11 11 C 1.38804 * 120.00274 * 62.46390 * 9 8 4 12 12 N 1.31625 * 119.99967 * 177.56813 * 11 9 8 13 13 Si 1.86798 * 119.99997 * 357.57067 * 11 9 8 14 14 H 1.48511 * 109.47074 * 92.11973 * 13 11 9 15 15 H 1.48503 * 109.47352 * 212.11447 * 13 11 9 16 16 H 1.48500 * 109.47301 * 332.11881 * 13 11 9 17 17 C 1.34779 * 119.99667 * 179.97438 * 2 1 3 18 18 O 1.21565 * 119.99906 * 184.44594 * 17 2 1 19 19 C 1.47776 * 120.00197 * 4.44745 * 17 2 1 20 20 C 1.40598 * 119.78958 * 23.44483 * 19 17 2 21 21 C 1.35916 * 120.88885 * 179.73217 * 20 19 17 22 22 F 1.35101 * 119.97109 * 180.29986 * 21 20 19 23 23 C 1.40962 * 120.06410 * 0.51528 * 21 20 19 24 24 N 1.33625 * 120.83468 * 179.78511 * 23 21 20 25 25 C 1.31108 * 121.39396 * 179.97438 * 24 23 21 26 26 C 1.39319 * 121.76504 * 359.97438 * 25 24 23 27 27 C 1.36569 * 119.90199 * 0.06488 * 26 25 24 28 28 C 1.40897 * 118.16075 * 359.91840 * 27 26 25 29 29 C 1.38535 * 119.78579 * 203.71347 * 19 17 2 30 30 H 1.09002 * 109.46761 * 84.68877 * 1 2 3 31 31 H 1.09004 * 109.47266 * 204.68288 * 1 2 3 32 32 H 1.08997 * 109.47276 * 324.69014 * 1 2 3 33 33 H 1.09001 * 109.47082 * 155.75581 * 3 2 1 34 34 H 1.08998 * 109.46859 * 35.74977 * 3 2 1 35 35 H 1.08998 * 113.74469 * 252.26053 * 6 4 3 36 36 H 1.09010 * 113.74139 * 23.45552 * 6 4 3 37 37 H 1.09004 * 113.76328 * 90.69491 * 7 6 4 38 38 H 1.09001 * 113.77138 * 221.97949 * 7 6 4 39 39 H 0.97006 * 119.99669 * 180.02562 * 12 11 9 40 40 H 1.08000 * 119.55504 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.11516 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.05006 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.91987 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.27736 * 359.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3273 1.7826 -1.4353 5 1 1.3820 1.7720 -1.9779 6 6 3.0944 3.1122 -1.5513 7 6 3.7835 2.4921 -2.7804 8 7 3.4512 1.1847 -2.1818 9 6 3.9753 -0.0766 -2.2799 10 1 4.9890 -0.2666 -1.9593 11 6 3.2037 -1.1110 -2.7911 12 7 3.7227 -2.3126 -2.9300 13 14 1.4288 -0.7977 -3.2821 14 1 1.3699 -0.4349 -4.7210 15 1 0.6264 -2.0251 -3.0480 16 1 0.8792 0.3159 -2.4679 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1689 0.0821 19 6 1.4032 -2.4451 -0.0981 20 6 0.1202 -2.4700 -0.6725 21 6 -0.5740 -3.6336 -0.7794 22 9 -1.8032 -3.6371 -1.3400 23 6 -0.0146 -4.8361 -0.3018 24 7 -0.6853 -5.9881 -0.3952 25 6 -0.1753 -7.1129 0.0449 26 6 1.0879 -7.1660 0.6303 27 6 1.8276 -6.0251 0.7581 28 6 1.2762 -4.8185 0.2836 29 6 1.9801 -3.6100 0.3809 30 1 -0.3633 0.0951 -1.0233 31 1 -0.3634 -0.9338 0.4292 32 1 -0.3633 0.8386 0.5940 33 1 3.1907 1.1148 0.4220 34 1 1.6569 2.0004 0.6004 35 1 2.4596 3.9660 -1.7882 36 1 3.7698 3.3034 -0.7173 37 1 3.2669 2.6893 -3.7197 38 1 4.8534 2.6942 -2.8328 39 1 3.1835 -3.0354 -3.2877 40 1 -0.3181 -1.5527 -1.0371 41 1 -0.7498 -8.0226 -0.0488 42 1 1.4813 -8.1079 0.9831 43 1 2.8084 -6.0473 1.2096 44 1 2.9642 -3.5875 0.8252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085875837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:22 Heat of formation + Delta-G solvation = 86.094575 kcal Electronic energy + Delta-G solvation = -31456.868939 eV Core-core repulsion = 27292.918152 eV Total energy + Delta-G solvation = -4163.950787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.70754 -40.82765 -39.56181 -37.90021 -36.36339 -35.00740 -33.29203 -32.21225 -31.10039 -29.69068 -28.64517 -28.05517 -26.43416 -24.76233 -23.90258 -22.89505 -22.61626 -21.85836 -19.74814 -19.35508 -18.53794 -17.63128 -17.07988 -16.59171 -16.08674 -15.83886 -15.62455 -15.45170 -15.18336 -14.94530 -14.71498 -14.45239 -13.92097 -13.60685 -13.51970 -13.26045 -13.11654 -12.93798 -12.78240 -12.72352 -12.21708 -12.10879 -11.98345 -11.75287 -11.53267 -11.32326 -11.07672 -10.85840 -10.58455 -10.39823 -10.21756 -10.03170 -9.68525 -9.63040 -9.48659 -9.10772 -8.71485 -8.33513 -8.06825 -7.89976 -6.27555 -5.84443 -3.58653 0.27758 0.61476 1.87889 2.57766 3.26070 3.40156 3.43943 3.49973 3.71867 3.94678 4.13392 4.28069 4.54394 4.60528 4.66295 4.82745 4.83408 4.92070 5.07332 5.18501 5.29187 5.31298 5.40453 5.50836 5.55653 5.55849 5.71318 5.80130 5.81106 5.88102 5.92324 6.00336 6.08435 6.14338 6.24264 6.30060 6.36438 6.43043 6.50208 6.63384 6.72428 6.77167 7.09250 7.21695 7.76977 7.95500 8.12617 8.37498 8.93818 8.96609 9.74313 10.61813 11.25583 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.004434 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.307411 B = 6312.816156 C = 6497.475345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.611 5.611 3 C 0.128 3.872 4 C 0.099 3.901 5 H 0.056 0.944 6 C -0.147 4.147 7 C 0.104 3.896 8 N -0.606 5.606 9 C -0.221 4.221 10 H 0.072 0.928 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.837 3.163 14 H -0.295 1.295 15 H -0.287 1.287 16 H -0.235 1.235 17 C 0.550 3.450 18 O -0.457 6.457 19 C -0.084 4.084 20 C -0.129 4.129 21 C 0.109 3.891 22 F -0.125 7.125 23 C 0.109 3.891 24 N -0.470 5.470 25 C 0.131 3.869 26 C -0.177 4.177 27 C -0.044 4.044 28 C -0.086 4.086 29 C -0.036 4.036 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.258 0.742 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 -2.582 10.201 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.347 5.347 3 C 0.005 3.995 4 C -0.007 4.007 5 H 0.073 0.927 6 C -0.186 4.186 7 C -0.021 4.021 8 N -0.335 5.335 9 C -0.349 4.349 10 H 0.089 0.911 11 C -0.141 4.141 12 N -0.524 5.524 13 Si 0.667 3.333 14 H -0.222 1.222 15 H -0.213 1.213 16 H -0.161 1.161 17 C 0.336 3.664 18 O -0.327 6.327 19 C -0.087 4.087 20 C -0.150 4.150 21 C 0.089 3.911 22 F -0.104 7.104 23 C -0.014 4.014 24 N -0.178 5.178 25 C -0.042 4.042 26 C -0.197 4.197 27 C -0.070 4.070 28 C -0.088 4.088 29 C -0.056 4.056 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.176 0.824 41 H 0.178 0.822 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.733 -2.873 9.760 13.408 hybrid contribution -0.689 -0.138 -0.629 0.943 sum -9.422 -3.011 9.131 13.462 Atomic orbital electron populations 1.22444 0.81661 1.02920 1.01323 1.47413 1.05552 1.06337 1.75383 1.21695 0.97640 0.82837 0.97329 1.23301 0.94125 0.90901 0.92379 0.92683 1.23563 0.99453 0.95811 0.99723 1.22750 0.97857 0.87755 0.93694 1.46037 1.33732 1.04882 1.48809 1.18198 0.99105 0.81067 1.36579 0.91072 1.25948 0.97403 0.96025 0.94701 1.69789 1.35913 1.01195 1.45488 0.87723 0.87720 0.78409 0.79466 1.22217 1.21332 1.16072 1.17677 0.87265 0.82524 0.78884 1.90878 1.12003 1.85912 1.43891 1.19851 0.93307 0.95666 0.99881 1.21832 0.95012 0.98588 0.99541 1.16838 0.82355 0.92235 0.99694 1.91495 1.39307 1.97093 1.82474 1.18792 0.91877 0.91901 0.98801 1.67984 1.35132 0.98015 1.16636 1.22966 0.93111 0.95825 0.92273 1.21892 0.96241 0.99581 1.01962 1.21544 0.99577 0.90988 0.94881 1.18568 0.94394 0.95176 1.00643 1.21375 0.98948 0.89341 0.95898 0.92638 0.90252 0.91327 0.88905 0.91896 0.93030 0.90509 0.95203 0.93492 0.93218 0.82358 0.82214 0.84192 0.83580 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 8.24 59.85 0.49 1.36 16 2 N -0.61 -11.32 1.77 -182.71 -0.32 -11.64 16 3 C 0.13 2.30 5.41 -4.04 -0.02 2.28 16 4 C 0.10 1.95 2.97 -66.86 -0.20 1.75 16 5 H 0.06 1.13 5.90 -51.93 -0.31 0.83 16 6 C -0.15 -2.46 7.86 -25.81 -0.20 -2.66 16 7 C 0.10 2.10 8.93 -2.98 -0.03 2.07 16 8 N -0.61 -14.60 2.59 -170.77 -0.44 -15.05 16 9 C -0.22 -6.29 8.38 -15.06 -0.13 -6.42 16 10 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 11 C 0.06 1.80 3.80 -17.43 -0.07 1.73 16 12 N -0.89 -26.90 13.97 55.49 0.78 -26.13 16 13 Si 0.84 21.30 21.99 -169.99 -3.74 17.56 16 14 H -0.29 -8.02 7.11 56.52 0.40 -7.62 16 15 H -0.29 -7.26 5.79 56.52 0.33 -6.93 16 16 H -0.24 -5.31 2.24 56.52 0.13 -5.18 16 17 C 0.55 11.72 4.33 -12.36 -0.05 11.67 16 18 O -0.46 -11.41 13.23 5.31 0.07 -11.34 16 19 C -0.08 -1.64 5.11 -105.00 -0.54 -2.18 16 20 C -0.13 -2.42 4.80 -39.52 -0.19 -2.61 16 21 C 0.11 2.03 7.29 -39.38 -0.29 1.74 16 22 F -0.13 -2.32 17.10 2.25 0.04 -2.28 16 23 C 0.11 1.92 6.61 -84.72 -0.56 1.36 16 24 N -0.47 -7.64 10.19 -10.88 -0.11 -7.75 16 25 C 0.13 1.57 11.15 -17.46 -0.19 1.38 16 26 C -0.18 -1.86 10.03 -39.78 -0.40 -2.26 16 27 C -0.04 -0.55 9.89 -39.18 -0.39 -0.94 16 28 C -0.09 -1.40 5.74 -106.82 -0.61 -2.01 16 29 C -0.04 -0.64 9.33 -38.74 -0.36 -1.01 16 30 H 0.06 0.85 5.23 -51.93 -0.27 0.58 16 31 H 0.08 1.09 5.01 -51.93 -0.26 0.83 16 32 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 33 H 0.09 1.89 7.21 -51.93 -0.37 1.51 16 34 H 0.06 0.88 8.02 -51.93 -0.42 0.47 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.22 8.10 -51.92 -0.42 0.80 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.16 2.84 3.19 -52.49 -0.17 2.67 16 41 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 43 H 0.15 1.43 8.06 -52.48 -0.42 1.00 16 44 H 0.15 2.57 7.80 -52.49 -0.41 2.16 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -35.33 339.29 -7.84 -43.17 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.49 Total: 3.07 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -3.73 Total: 5.27 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.10 Total: -60.56 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.34 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -3.74 Total: 17.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.33 -7.84 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085875837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.266 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds