Wall clock time and date at job start Wed Apr 1 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00076 * 2 1 4 4 C 1.53005 * 109.46690 * 275.75087 * 3 2 1 5 5 H 1.08997 * 112.96683 * 48.77722 * 4 3 2 6 6 C 1.53942 * 113.76836 * 180.45382 * 4 3 2 7 7 C 1.53944 * 86.29196 * 137.90630 * 6 4 3 8 8 N 1.47578 * 113.76858 * 276.94732 * 4 3 2 9 9 C 1.36937 * 134.49466 * 41.06690 * 8 4 3 10 10 H 1.08002 * 119.99869 * 242.46754 * 9 8 4 11 11 C 1.38804 * 120.00274 * 62.46390 * 9 8 4 12 12 N 1.31625 * 119.99967 * 177.56813 * 11 9 8 13 13 Si 1.86798 * 119.99997 * 357.57067 * 11 9 8 14 14 H 1.48511 * 109.47074 * 92.11973 * 13 11 9 15 15 H 1.48503 * 109.47352 * 212.11447 * 13 11 9 16 16 H 1.48500 * 109.47301 * 332.11881 * 13 11 9 17 17 C 1.34779 * 119.99667 * 179.97438 * 2 1 3 18 18 O 1.21565 * 119.99906 * 184.44594 * 17 2 1 19 19 C 1.47776 * 120.00197 * 4.44745 * 17 2 1 20 20 C 1.40598 * 119.78958 * 23.44483 * 19 17 2 21 21 C 1.35916 * 120.88885 * 179.73217 * 20 19 17 22 22 F 1.35101 * 119.97109 * 180.29986 * 21 20 19 23 23 C 1.40962 * 120.06410 * 0.51528 * 21 20 19 24 24 N 1.33625 * 120.83468 * 179.78511 * 23 21 20 25 25 C 1.31108 * 121.39396 * 179.97438 * 24 23 21 26 26 C 1.39319 * 121.76504 * 359.97438 * 25 24 23 27 27 C 1.36569 * 119.90199 * 0.06488 * 26 25 24 28 28 C 1.40897 * 118.16075 * 359.91840 * 27 26 25 29 29 C 1.38535 * 119.78579 * 203.71347 * 19 17 2 30 30 H 1.09002 * 109.46761 * 84.68877 * 1 2 3 31 31 H 1.09004 * 109.47266 * 204.68288 * 1 2 3 32 32 H 1.08997 * 109.47276 * 324.69014 * 1 2 3 33 33 H 1.09001 * 109.47082 * 155.75581 * 3 2 1 34 34 H 1.08998 * 109.46859 * 35.74977 * 3 2 1 35 35 H 1.08998 * 113.74469 * 252.26053 * 6 4 3 36 36 H 1.09010 * 113.74139 * 23.45552 * 6 4 3 37 37 H 1.09004 * 113.76328 * 90.69491 * 7 6 4 38 38 H 1.09001 * 113.77138 * 221.97949 * 7 6 4 39 39 H 0.97006 * 119.99669 * 180.02562 * 12 11 9 40 40 H 1.08000 * 119.55504 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.11516 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.05006 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.91987 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.27736 * 359.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3273 1.7826 -1.4353 5 1 1.3820 1.7720 -1.9779 6 6 3.0944 3.1122 -1.5513 7 6 3.7835 2.4921 -2.7804 8 7 3.4512 1.1847 -2.1818 9 6 3.9753 -0.0766 -2.2799 10 1 4.9890 -0.2666 -1.9593 11 6 3.2037 -1.1110 -2.7911 12 7 3.7227 -2.3126 -2.9300 13 14 1.4288 -0.7977 -3.2821 14 1 1.3699 -0.4349 -4.7210 15 1 0.6264 -2.0251 -3.0480 16 1 0.8792 0.3159 -2.4679 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1689 0.0821 19 6 1.4032 -2.4451 -0.0981 20 6 0.1202 -2.4700 -0.6725 21 6 -0.5740 -3.6336 -0.7794 22 9 -1.8032 -3.6371 -1.3400 23 6 -0.0146 -4.8361 -0.3018 24 7 -0.6853 -5.9881 -0.3952 25 6 -0.1753 -7.1129 0.0449 26 6 1.0879 -7.1660 0.6303 27 6 1.8276 -6.0251 0.7581 28 6 1.2762 -4.8185 0.2836 29 6 1.9801 -3.6100 0.3809 30 1 -0.3633 0.0951 -1.0233 31 1 -0.3634 -0.9338 0.4292 32 1 -0.3633 0.8386 0.5940 33 1 3.1907 1.1148 0.4220 34 1 1.6569 2.0004 0.6004 35 1 2.4596 3.9660 -1.7882 36 1 3.7698 3.3034 -0.7173 37 1 3.2669 2.6893 -3.7197 38 1 4.8534 2.6942 -2.8328 39 1 3.1835 -3.0354 -3.2877 40 1 -0.3181 -1.5527 -1.0371 41 1 -0.7498 -8.0226 -0.0488 42 1 1.4813 -8.1079 0.9831 43 1 2.8084 -6.0473 1.2096 44 1 2.9642 -3.5875 0.8252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085875837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:21 Heat of formation + Delta-G solvation = 61.284279 kcal Electronic energy + Delta-G solvation = -31457.944794 eV Core-core repulsion = 27292.918152 eV Total energy + Delta-G solvation = -4165.026642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.09205 -42.06506 -40.98012 -39.48432 -37.72973 -36.49995 -34.43089 -34.32821 -32.34142 -30.98636 -30.37556 -29.61447 -27.77758 -26.03855 -25.10206 -24.78202 -24.00892 -23.17203 -21.18898 -21.02726 -19.80051 -18.88990 -18.58098 -18.30151 -17.63967 -17.26170 -17.03684 -16.77900 -16.54991 -16.49061 -15.99584 -15.81413 -15.39880 -15.16076 -15.00272 -14.90669 -14.57646 -14.23837 -14.15328 -14.00662 -13.91164 -13.56266 -13.39125 -13.34132 -13.04434 -12.79174 -12.53215 -12.44421 -12.15841 -11.89793 -11.70557 -11.53294 -11.48298 -11.27225 -10.73264 -10.70865 -10.45899 -9.96052 -9.50876 -9.27290 -8.28448 -7.96036 -5.78557 -0.92983 -0.58571 0.68960 1.18576 1.28779 1.30891 1.41392 2.08996 2.32023 2.43280 2.71321 2.90605 3.08242 3.19036 3.21229 3.36847 3.53410 3.64638 3.79363 3.89501 3.96500 4.03751 4.24358 4.30653 4.31768 4.42198 4.42512 4.49352 4.54803 4.63242 4.73915 4.75896 4.77623 4.82086 4.88355 4.93469 5.03533 5.10157 5.13698 5.19760 5.32222 5.60364 5.63882 5.77756 6.07687 6.37755 6.49055 6.69317 6.72555 7.41740 7.54105 8.55573 9.10848 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.004434 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.307411 B = 6312.816156 C = 6497.475345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.613 5.613 3 C 0.127 3.873 4 C 0.096 3.904 5 H 0.059 0.941 6 C -0.114 4.114 7 C 0.093 3.907 8 N -0.637 5.637 9 C -0.207 4.207 10 H 0.010 0.990 11 C 0.024 3.976 12 N -0.930 5.930 13 Si 0.885 3.115 14 H -0.318 1.318 15 H -0.289 1.289 16 H -0.191 1.191 17 C 0.549 3.451 18 O -0.513 6.513 19 C -0.113 4.113 20 C -0.134 4.134 21 C 0.092 3.908 22 F -0.130 7.130 23 C 0.093 3.907 24 N -0.506 5.506 25 C 0.141 3.859 26 C -0.154 4.154 27 C -0.052 4.052 28 C -0.100 4.100 29 C -0.037 4.037 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.250 0.750 40 H 0.164 0.836 41 H 0.204 0.796 42 H 0.191 0.809 43 H 0.172 0.828 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.145 -2.387 11.713 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.347 5.347 3 C 0.004 3.996 4 C -0.010 4.010 5 H 0.076 0.924 6 C -0.152 4.152 7 C -0.031 4.031 8 N -0.367 5.367 9 C -0.337 4.337 10 H 0.027 0.973 11 C -0.175 4.175 12 N -0.571 5.571 13 Si 0.714 3.286 14 H -0.247 1.247 15 H -0.216 1.216 16 H -0.114 1.114 17 C 0.336 3.664 18 O -0.388 6.388 19 C -0.116 4.116 20 C -0.154 4.154 21 C 0.071 3.929 22 F -0.108 7.108 23 C -0.029 4.029 24 N -0.215 5.215 25 C -0.031 4.031 26 C -0.173 4.173 27 C -0.078 4.078 28 C -0.102 4.102 29 C -0.056 4.056 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.181 0.819 41 H 0.221 0.779 42 H 0.209 0.791 43 H 0.190 0.810 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.304 -2.617 11.299 16.196 hybrid contribution 0.172 -0.356 -1.006 1.081 sum -11.132 -2.973 10.293 15.450 Atomic orbital electron populations 1.22682 0.79006 1.05329 1.01964 1.47590 1.07316 1.05714 1.74061 1.21752 0.97268 0.83695 0.96854 1.23443 0.92819 0.92050 0.92654 0.92355 1.23351 0.98730 0.95409 0.97747 1.22960 0.98400 0.86002 0.95757 1.46298 1.35207 1.04399 1.50747 1.17643 0.97001 0.83561 1.35475 0.97257 1.26354 1.00788 0.95392 0.94996 1.69950 1.37120 1.02145 1.47935 0.87029 0.83914 0.79687 0.77958 1.24711 1.21640 1.11429 1.18024 0.86815 0.83815 0.77699 1.90850 1.14217 1.86805 1.46899 1.19805 0.94115 0.95497 1.02213 1.21775 0.94678 0.98971 0.99981 1.17047 0.82428 0.92985 1.00400 1.91466 1.39497 1.97168 1.82672 1.18915 0.92424 0.92393 0.99145 1.68046 1.36066 0.98641 1.18753 1.23875 0.93871 0.95856 0.89483 1.22445 0.94894 1.00712 0.99235 1.21963 1.00956 0.90208 0.94672 1.18775 0.94205 0.95967 1.01297 1.21517 0.98757 0.90043 0.95313 0.93001 0.89729 0.86867 0.91940 0.86548 0.88632 0.89393 0.94443 0.93897 0.94064 0.81858 0.77927 0.79146 0.81042 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.38 8.24 127.77 1.05 2.43 16 2 N -0.61 -22.08 1.77 -850.25 -1.50 -23.58 16 3 C 0.13 4.30 5.41 86.38 0.47 4.77 16 4 C 0.10 3.53 2.97 45.09 0.13 3.66 16 5 H 0.06 2.16 5.90 -2.39 -0.01 2.15 16 6 C -0.11 -3.38 7.86 31.25 0.25 -3.14 16 7 C 0.09 3.63 8.93 86.48 0.77 4.40 16 8 N -0.64 -30.89 2.59 -694.19 -1.80 -32.69 16 9 C -0.21 -12.43 8.38 84.03 0.70 -11.73 16 10 H 0.01 0.70 8.06 -2.91 -0.02 0.68 16 11 C 0.02 1.43 3.80 84.86 0.32 1.75 16 12 N -0.93 -60.08 13.97 21.65 0.30 -59.78 16 13 Si 0.88 45.22 21.99 68.60 1.51 46.73 16 14 H -0.32 -17.36 7.11 99.48 0.71 -16.65 16 15 H -0.29 -14.84 5.79 99.48 0.58 -14.26 16 16 H -0.19 -8.20 2.24 99.48 0.22 -7.98 16 17 C 0.55 24.14 4.33 86.77 0.38 24.52 16 18 O -0.51 -27.33 13.23 -3.92 -0.05 -27.38 16 19 C -0.11 -4.59 5.11 -20.11 -0.10 -4.70 16 20 C -0.13 -5.09 4.80 22.31 0.11 -4.98 16 21 C 0.09 3.46 7.29 22.40 0.16 3.62 16 22 F -0.13 -4.83 17.10 44.97 0.77 -4.06 16 23 C 0.09 3.29 6.61 40.40 0.27 3.55 16 24 N -0.51 -15.73 10.19 -188.33 -1.92 -17.65 16 25 C 0.14 2.88 11.15 85.06 0.95 3.83 16 26 C -0.15 -2.58 10.03 22.14 0.22 -2.36 16 27 C -0.05 -1.20 9.89 22.53 0.22 -0.98 16 28 C -0.10 -3.28 5.74 -21.29 -0.12 -3.40 16 29 C -0.04 -1.37 9.33 22.82 0.21 -1.16 16 30 H 0.05 1.44 5.23 -2.39 -0.01 1.43 16 31 H 0.08 2.21 5.01 -2.38 -0.01 2.20 16 32 H 0.11 2.01 8.01 -2.39 -0.02 1.99 16 33 H 0.06 2.54 7.21 -2.39 -0.02 2.52 16 34 H 0.12 2.71 8.02 -2.39 -0.02 2.69 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.46 8.10 -2.38 -0.02 2.44 16 37 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.25 15.78 8.31 -92.70 -0.77 15.01 16 40 H 0.16 5.80 3.19 -2.91 -0.01 5.80 16 41 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 44 H 0.15 5.38 7.80 -2.91 -0.02 5.35 16 Total: -1.00 -87.02 339.29 3.73 -83.28 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.44 Total: 15.03 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 5.99 Total: 20.09 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -4.92 Total: -133.70 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.77 Total: -4.06 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.51 Total: 46.73 kcal Total: -87.02 3.73 -83.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085875837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.567 kcal (2) G-P(sol) polarization free energy of solvation -87.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds