Wall clock time and date at job start Wed Apr 1 2020 02:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.87517 * 2 1 4 4 C 1.54430 * 110.00738 * 238.91125 * 2 1 3 5 5 H 1.08996 * 110.72247 * 336.66083 * 4 2 1 6 6 N 1.46498 * 110.76125 * 99.96484 * 4 2 1 7 7 C 1.34777 * 120.00060 * 199.94008 * 6 4 2 8 8 O 1.21614 * 119.99788 * 0.02562 * 7 6 4 9 9 C 1.47387 * 120.00058 * 180.02562 * 7 6 4 10 10 C 1.38955 * 120.65552 * 354.24713 * 9 7 6 11 11 C 1.38739 * 120.73088 * 180.02562 * 10 9 7 12 12 C 1.37491 * 121.68174 * 359.97438 * 11 10 9 13 13 F 1.35105 * 119.85542 * 179.97438 * 12 11 10 14 14 C 1.40587 * 120.29582 * 0.02562 * 12 11 10 15 15 C 1.40588 * 122.25202 * 180.02562 * 14 12 11 16 16 C 1.36315 * 118.64691 * 179.16099 * 15 14 12 17 17 N 1.32487 * 121.87588 * 0.85480 * 16 15 14 18 18 C 1.31367 * 122.68649 * 359.41450 * 17 16 15 19 19 C 1.40009 * 119.85164 * 0.02562 * 18 17 16 20 20 C 1.55159 * 102.89199 * 218.32096 * 4 2 1 21 21 C 1.54911 * 101.61689 * 35.49863 * 20 4 2 22 22 N 1.47025 * 109.88314 * 121.01462 * 2 1 3 23 23 C 1.36942 * 125.64662 * 298.47841 * 22 2 1 24 24 H 1.07997 * 119.99753 * 0.02562 * 23 22 2 25 25 C 1.38807 * 119.99469 * 180.02562 * 23 22 2 26 26 N 1.31615 * 120.00503 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99778 * 179.97438 * 25 23 22 28 28 H 1.48509 * 109.47210 * 60.00060 * 27 25 23 29 29 H 1.48497 * 109.47463 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47132 * 300.00334 * 27 25 23 31 31 H 1.09003 * 109.46980 * 300.44405 * 1 2 3 32 32 H 1.08998 * 109.47242 * 60.43504 * 1 2 3 33 33 H 1.08999 * 109.47148 * 180.43737 * 1 2 3 34 34 H 0.97002 * 119.99675 * 19.94547 * 6 4 2 35 35 H 1.07995 * 119.63135 * 0.02562 * 10 9 7 36 36 H 1.08008 * 119.15670 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.67233 * 359.95164 * 15 14 12 38 38 H 1.07998 * 119.06327 * 180.26800 * 16 15 14 39 39 H 1.08005 * 120.07457 * 180.02562 * 18 17 16 40 40 H 1.08994 * 111.00725 * 277.40654 * 20 4 2 41 41 H 1.09001 * 111.00018 * 153.59180 * 20 4 2 42 42 H 1.09002 * 110.36649 * 81.81097 * 21 20 4 43 43 H 1.09001 * 110.36863 * 204.12861 * 21 20 4 44 44 H 0.97002 * 120.00328 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0584 -0.7493 -1.2427 5 1 1.3108 -1.4477 -1.6187 6 7 2.4588 0.1960 -2.2878 7 6 2.5624 -0.2172 -3.5665 8 8 2.3230 -1.3746 -3.8527 9 6 2.9657 0.7338 -4.6178 10 6 3.1271 2.0833 -4.3285 11 6 3.5063 2.9798 -5.3171 12 6 3.7361 2.5740 -6.6105 13 9 4.1035 3.4788 -7.5441 14 6 3.5896 1.2217 -6.9661 15 6 3.8146 0.7617 -8.2754 16 6 3.6678 -0.5685 -8.5350 17 7 3.3050 -1.4289 -7.5951 18 6 3.0735 -1.0674 -6.3535 19 6 3.2080 0.2758 -5.9821 20 6 3.2918 -1.5108 -0.6893 21 6 2.8176 -1.8762 0.7394 22 7 2.0300 -0.7124 1.1849 23 6 1.8025 -0.3538 2.4868 24 1 1.2095 0.5208 2.7102 25 6 2.3340 -1.1143 3.5192 26 7 3.0571 -2.1798 3.2469 27 14 2.0242 -0.6248 5.2951 28 1 0.5633 -0.6286 5.5621 29 1 2.6957 -1.5922 6.1997 30 1 2.5677 0.7362 5.5354 31 1 -0.3633 0.5207 0.8860 32 1 -0.3633 0.5070 -0.8938 33 1 -0.3633 -1.0276 0.0078 34 1 2.6494 1.1193 -2.0594 35 1 2.9555 2.4381 -3.3231 36 1 3.6247 4.0231 -5.0640 37 1 4.1102 1.4462 -9.0567 38 1 3.8432 -0.9298 -9.5374 39 1 2.7801 -1.8047 -5.6209 40 1 4.1681 -0.8635 -0.6564 41 1 3.4927 -2.4074 -1.2756 42 1 2.1937 -2.7697 0.7151 43 1 3.6741 -2.0285 1.3961 44 1 3.4288 -2.7111 3.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088809142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:43 Heat of formation + Delta-G solvation = 10.531022 kcal Electronic energy + Delta-G solvation = -29194.787789 eV Core-core repulsion = 25027.560320 eV Total energy + Delta-G solvation = -4167.227469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.48257 -41.14591 -39.67300 -37.76297 -37.21845 -34.27999 -33.01876 -32.12488 -31.54198 -30.48883 -30.00176 -28.51441 -25.50973 -24.59338 -24.07983 -24.05038 -23.12909 -20.99078 -20.31860 -19.82368 -18.66091 -18.18222 -17.88385 -16.95896 -16.72617 -16.22257 -16.08062 -15.54983 -15.22724 -14.96266 -14.87933 -14.70976 -14.24215 -14.11582 -13.97232 -13.57760 -13.51928 -13.16119 -12.85155 -12.74506 -12.23792 -12.18694 -12.00342 -11.93330 -11.62556 -11.20118 -10.90105 -10.88060 -10.61790 -10.49228 -10.40960 -10.16442 -9.96025 -9.81632 -9.68776 -9.62894 -9.60320 -8.86314 -8.69380 -8.37217 -6.93255 -5.70089 -3.13507 -0.38957 0.38915 1.19032 2.22812 2.99825 3.06623 3.36742 3.41453 3.42828 3.51024 3.67698 4.00663 4.08144 4.28966 4.34263 4.41554 4.45070 4.48531 4.87466 5.01368 5.17085 5.26443 5.29529 5.36275 5.41625 5.45773 5.54914 5.56694 5.65176 5.67619 5.73783 6.04098 6.13520 6.17920 6.21868 6.26491 6.38286 6.47199 6.52341 6.65553 6.79270 7.01022 7.44244 7.51643 7.57021 7.69760 7.80414 8.14566 8.30370 9.15533 9.76420 10.39553 11.33070 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.002385 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.137261 B =11736.548803 C =12438.217228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.134 3.866 5 H 0.096 0.904 6 N -0.703 5.703 7 C 0.560 3.440 8 O -0.531 6.531 9 C -0.103 4.103 10 C -0.057 4.057 11 C -0.139 4.139 12 C 0.125 3.875 13 F -0.127 7.127 14 C -0.056 4.056 15 C -0.158 4.158 16 C 0.084 3.916 17 N -0.481 5.481 18 C 0.151 3.849 19 C -0.059 4.059 20 C -0.153 4.153 21 C 0.152 3.848 22 N -0.595 5.595 23 C -0.223 4.223 24 H 0.077 0.923 25 C -0.009 4.009 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.398 0.602 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.157 0.843 39 H 0.203 0.797 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.015 0.985 43 H 0.110 0.890 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 10.067 -20.728 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.030 3.970 5 H 0.114 0.886 6 N -0.353 5.353 7 C 0.347 3.653 8 O -0.410 6.410 9 C -0.108 4.108 10 C -0.076 4.076 11 C -0.160 4.160 12 C 0.105 3.895 13 F -0.105 7.105 14 C -0.063 4.063 15 C -0.177 4.177 16 C -0.060 4.060 17 N -0.189 5.189 18 C -0.017 4.017 19 C -0.062 4.062 20 C -0.193 4.193 21 C 0.027 3.973 22 N -0.320 5.320 23 C -0.351 4.351 24 H 0.095 0.905 25 C -0.204 4.204 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.234 0.766 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.219 0.781 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.127 0.873 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.454 8.327 -21.071 22.703 hybrid contribution 0.064 1.985 1.007 2.227 sum 1.519 10.312 -20.064 22.610 Atomic orbital electron populations 1.22253 0.97774 1.01537 1.00019 1.20995 0.92654 0.94728 0.86855 0.94729 1.22271 0.97918 0.90696 0.86111 0.88570 1.46000 1.68261 1.14218 1.06799 1.17808 0.77921 0.87248 0.82323 1.90627 1.50457 1.18497 1.81397 1.21044 1.03041 0.93895 0.92805 1.21260 0.95256 0.91465 0.99651 1.20992 1.02063 1.01853 0.91050 1.17638 0.99647 0.85467 0.86729 1.91525 1.88536 1.65895 1.64577 1.18051 1.01293 0.91977 0.94939 1.21818 1.02402 0.98009 0.95511 1.22372 0.95133 0.89443 0.99055 1.67729 1.10736 1.38685 1.01724 1.24447 0.90235 0.93946 0.93104 1.19606 0.99779 0.95032 0.91737 1.23414 0.96556 0.99466 0.99814 1.21965 0.97386 0.88413 0.89493 1.44476 1.59094 1.28411 1.00002 1.18960 1.27300 1.08370 0.80472 0.90498 1.24786 1.00249 0.97344 0.98068 1.69773 1.38773 1.17935 1.30354 0.86165 0.77672 0.77438 0.84257 1.21197 1.21567 1.21180 0.92610 0.94312 0.92832 0.76639 0.83685 0.83466 0.83972 0.82548 0.78128 0.91940 0.91713 0.96651 0.87265 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.15 37.16 0.34 -2.37 16 2 C 0.16 2.90 3.47 -66.89 -0.23 2.67 16 3 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 4 C 0.13 2.23 2.77 -66.04 -0.18 2.05 16 5 H 0.10 1.71 7.42 -51.93 -0.39 1.33 16 6 N -0.70 -9.13 5.16 -53.06 -0.27 -9.40 16 7 C 0.56 7.54 7.74 -12.54 -0.10 7.44 16 8 O -0.53 -8.64 13.38 5.27 0.07 -8.57 16 9 C -0.10 -1.14 6.05 -102.83 -0.62 -1.76 16 10 C -0.06 -0.47 9.52 -39.13 -0.37 -0.84 16 11 C -0.14 -1.06 9.90 -39.67 -0.39 -1.45 16 12 C 0.12 1.15 7.28 -38.97 -0.28 0.87 16 13 F -0.13 -1.15 16.72 2.25 0.04 -1.11 16 14 C -0.06 -0.60 5.75 -106.79 -0.61 -1.21 16 15 C -0.16 -1.46 9.70 -39.39 -0.38 -1.85 16 16 C 0.08 0.83 11.07 -17.96 -0.20 0.64 16 17 N -0.48 -6.09 10.30 -13.23 -0.14 -6.22 16 18 C 0.15 1.98 10.54 -17.09 -0.18 1.80 16 19 C -0.06 -0.70 5.90 -104.82 -0.62 -1.32 16 20 C -0.15 -2.85 6.76 -24.58 -0.17 -3.02 16 21 C 0.15 3.56 5.89 -2.53 -0.01 3.54 16 22 N -0.59 -14.13 3.13 -162.51 -0.51 -14.64 16 23 C -0.22 -5.84 9.87 -15.06 -0.15 -5.99 16 24 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 25 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 26 N -0.92 -25.97 10.09 55.49 0.56 -25.41 16 27 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 31 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.40 4.08 6.40 -40.82 -0.26 3.82 16 35 H 0.15 0.82 6.45 -52.49 -0.34 0.48 16 36 H 0.15 0.74 8.06 -52.48 -0.42 0.31 16 37 H 0.14 0.98 7.81 -52.48 -0.41 0.57 16 38 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.20 2.84 5.16 -52.48 -0.27 2.57 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -30.74 364.28 -9.34 -40.08 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.29 Total: 4.60 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -4.26 Total: -1.14 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.36 Total: -55.68 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.07 Total: -8.57 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.74 -9.34 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088809142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.613 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds