Wall clock time and date at job start Wed Apr 1 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.30339 * 2 1 4 4 C 1.54388 * 110.43399 * 237.76720 * 2 1 3 5 5 N 1.48152 * 104.61681 * 264.94794 * 4 2 1 6 6 C 1.34773 * 127.83559 * 140.38744 * 5 4 2 7 7 O 1.21685 * 119.99665 * 179.97438 * 6 5 4 8 8 C 1.46723 * 120.00191 * 359.97438 * 6 5 4 9 9 O 1.35335 * 126.64305 * 359.68515 * 8 6 5 10 10 C 1.33668 * 107.68553 * 179.87612 * 9 8 6 11 11 N 1.30623 * 109.15272 * 0.39266 * 10 9 8 12 12 C 1.33694 * 108.99080 * 359.75745 * 11 10 9 13 13 C 1.50701 * 126.26978 * 180.02562 * 12 11 10 14 14 F 1.39898 * 109.47535 * 29.97229 * 13 12 11 15 15 F 1.39900 * 109.47030 * 149.97363 * 13 12 11 16 16 C 1.48150 * 104.32113 * 320.41318 * 5 4 2 17 17 C 1.54280 * 110.34363 * 122.17450 * 2 1 3 18 18 H 1.08997 * 110.34585 * 359.97438 * 17 2 1 19 19 C 1.53005 * 110.34319 * 237.84592 * 17 2 1 20 20 C 1.53002 * 109.47347 * 175.00109 * 19 17 2 21 21 N 1.46494 * 109.47008 * 180.02562 * 20 19 17 22 22 C 1.36945 * 119.99612 * 180.02562 * 21 20 19 23 23 H 1.07999 * 120.00077 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99637 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47057 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47102 * 119.99824 * 26 24 22 29 29 H 1.48500 * 109.47389 * 240.00173 * 26 24 22 30 30 H 1.08999 * 109.47278 * 297.82759 * 1 2 3 31 31 H 1.08997 * 109.47014 * 57.82717 * 1 2 3 32 32 H 1.09001 * 109.46985 * 177.82382 * 1 2 3 33 33 H 1.09002 * 110.40733 * 23.73369 * 4 2 1 34 34 H 1.08997 * 110.41296 * 146.16696 * 4 2 1 35 35 H 1.07999 * 125.43063 * 180.15101 * 10 9 8 36 36 H 1.09000 * 109.46985 * 269.97107 * 13 12 11 37 37 H 1.08997 * 110.40598 * 280.79538 * 16 5 4 38 38 H 1.08995 * 110.40228 * 158.36693 * 16 5 4 39 39 H 1.09005 * 109.46988 * 55.00093 * 19 17 2 40 40 H 1.09004 * 109.47166 * 295.00481 * 19 17 2 41 41 H 1.08995 * 109.46742 * 59.99667 * 20 19 17 42 42 H 1.09002 * 109.46787 * 300.00388 * 20 19 17 43 43 H 0.96995 * 120.00290 * 0.27040 * 21 20 19 44 44 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2238 5 7 2.3178 -2.1429 -0.7212 6 6 2.0831 -3.3101 -1.3528 7 8 2.3443 -4.3632 -0.8018 8 6 1.5128 -3.3111 -2.7046 9 8 1.1679 -2.2262 -3.4366 10 6 0.6914 -2.6610 -4.6073 11 7 0.7206 -3.9668 -4.6235 12 6 1.2221 -4.4052 -3.4644 13 6 1.4289 -5.8450 -3.0701 14 9 1.6831 -6.6098 -4.2136 15 9 2.5171 -5.9374 -2.1958 16 6 2.8825 -1.9399 0.6333 17 6 2.0663 -0.7703 1.2244 18 1 1.2399 -1.1483 1.8262 19 6 2.9671 0.1335 2.0687 20 6 3.3868 -0.6082 3.3394 21 7 4.2487 0.2575 4.1479 22 6 4.7503 -0.1958 5.3389 23 1 4.5101 -1.1912 5.6822 24 6 5.5675 0.6243 6.1048 25 7 5.8599 1.8375 5.6866 26 14 6.2511 0.0064 7.7297 27 1 5.7769 -1.3800 7.9710 28 1 7.7353 0.0196 7.6793 29 1 5.7853 0.8880 8.8301 30 1 -0.3634 0.4797 0.9088 31 1 -0.3633 0.5472 -0.8698 32 1 -0.3633 -1.0269 -0.0390 33 1 1.3253 -0.7879 -2.0205 34 1 2.9969 -0.3225 -1.5779 35 1 0.3350 -2.0329 -5.4103 36 1 0.5324 -6.2185 -2.5751 37 1 3.9374 -1.6733 0.5692 38 1 2.7526 -2.8377 1.2376 39 1 2.4229 1.0384 2.3391 40 1 3.8542 0.4010 1.4943 41 1 3.9309 -1.5130 3.0689 42 1 2.4997 -0.8757 3.9136 43 1 4.4613 1.1528 3.8415 44 1 6.4306 2.4107 6.2220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104683460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:08 Heat of formation + Delta-G solvation = -90.842853 kcal Electronic energy + Delta-G solvation = -30192.605784 eV Core-core repulsion = 25590.213190 eV Total energy + Delta-G solvation = -4602.392594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.16457 -47.15620 -44.10547 -40.34585 -38.33344 -35.86388 -35.15081 -33.31260 -32.11670 -31.73578 -30.23468 -28.00126 -26.94098 -26.63189 -24.81002 -23.80703 -22.67111 -22.28292 -20.90382 -20.44939 -20.04971 -18.42978 -18.06692 -17.56352 -17.27907 -17.19496 -17.03582 -16.19616 -16.07542 -15.82581 -15.11563 -14.66425 -14.64770 -14.39666 -13.92245 -13.73178 -13.68321 -13.46205 -13.38827 -13.28024 -13.11371 -12.98342 -12.50096 -12.22976 -12.15608 -11.89632 -11.69167 -11.44256 -11.39306 -11.27536 -11.04854 -10.86257 -10.61592 -10.55166 -10.41199 -10.35885 -9.97273 -9.77670 -9.68231 -9.02305 -8.87797 -6.92638 -5.77262 -3.05799 0.13647 1.70408 1.75670 2.55595 2.60998 2.92090 3.43503 3.49474 3.51560 3.57643 3.81429 3.92878 4.29820 4.37981 4.50040 4.57224 4.59474 4.66466 4.75556 4.94233 4.99798 5.12873 5.21236 5.29454 5.33173 5.43430 5.48260 5.55484 5.64532 5.67779 5.75891 5.78743 5.91124 5.99893 6.08182 6.20441 6.34166 6.36327 6.77580 6.81314 6.85127 7.09309 7.60755 7.70859 8.42022 9.53183 10.11094 10.45299 11.45808 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.002242 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.837924 B =12484.127495 C =13673.612675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.094 0.906 4 C 0.097 3.903 5 N -0.608 5.608 6 C 0.612 3.388 7 O -0.490 6.490 8 C -0.047 4.047 9 O -0.179 6.179 10 C 0.203 3.797 11 N -0.467 5.467 12 C -0.015 4.015 13 C 0.355 3.645 14 F -0.190 7.190 15 F -0.162 7.162 16 C 0.112 3.888 17 C -0.092 4.092 18 H 0.085 0.915 19 C -0.117 4.117 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.238 4.238 23 H 0.071 0.929 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.263 0.737 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.893 -6.736 -24.015 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.112 0.888 4 C -0.025 4.025 5 N -0.341 5.341 6 C 0.397 3.603 7 O -0.365 6.365 8 C -0.104 4.104 9 O -0.064 6.064 10 C -0.023 4.023 11 N -0.194 5.194 12 C -0.140 4.140 13 C 0.300 3.700 14 F -0.171 7.171 15 F -0.143 7.143 16 C -0.009 4.009 17 C -0.112 4.112 18 H 0.104 0.896 19 C -0.155 4.155 20 C 0.023 3.977 21 N -0.378 5.378 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.279 0.721 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.890 -7.858 -24.114 29.410 hybrid contribution 0.724 0.653 1.016 1.409 sum -14.166 -7.205 -23.098 28.037 Atomic orbital electron populations 1.21836 0.94295 1.01681 1.02114 1.22204 0.96359 0.99929 0.93768 0.88820 1.22760 1.01352 0.81030 0.97364 1.48851 1.61661 1.05182 1.18405 1.15892 0.79149 0.83588 0.81652 1.91046 1.51976 1.29437 1.64047 1.23080 1.07115 0.84546 0.95623 1.84667 1.60681 1.35262 1.25814 1.28503 0.95635 0.90696 0.87434 1.70242 1.18097 1.10375 1.20692 1.22527 1.02775 0.97073 0.91635 1.19355 0.89803 0.83214 0.77624 1.93034 1.95421 1.76405 1.52243 1.93215 1.57036 1.96111 1.67925 1.22661 0.97856 0.99598 0.80822 1.22191 0.98558 0.94907 0.95554 0.89646 1.21826 0.98659 0.98297 0.96690 1.20687 0.93499 0.93508 0.89984 1.42370 1.57701 1.15650 1.22122 1.19290 1.23017 0.98518 0.96087 0.91122 1.24746 1.00862 0.96317 0.99198 1.69668 1.41671 1.07966 1.39036 0.86118 0.78579 0.77822 0.83708 1.20516 1.21849 1.21869 0.91821 0.92641 0.92941 0.89530 0.90322 0.72127 0.85167 0.89777 0.89180 0.91281 0.91556 0.96280 0.96446 0.78341 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.91 37.16 0.33 -0.78 16 2 C -0.10 -0.90 3.30 -89.22 -0.29 -1.20 16 3 H 0.09 0.77 7.71 -51.93 -0.40 0.37 16 4 C 0.10 0.83 6.27 -2.41 -0.02 0.82 16 5 N -0.61 -6.79 3.32 -170.82 -0.57 -7.36 16 6 C 0.61 7.65 7.83 -12.83 -0.10 7.55 16 7 O -0.49 -7.45 13.40 5.20 0.07 -7.38 16 8 C -0.05 -0.49 6.97 -36.84 -0.26 -0.74 16 9 O -0.18 -1.36 8.01 4.44 0.04 -1.33 16 10 C 0.20 1.14 13.21 52.25 0.69 1.83 16 11 N -0.47 -4.33 11.21 -10.88 -0.12 -4.45 16 12 C -0.02 -0.16 6.78 -82.46 -0.56 -0.72 16 13 C 0.35 3.70 5.63 36.01 0.20 3.90 16 14 F -0.19 -2.17 17.29 2.25 0.04 -2.13 16 15 F -0.16 -2.17 13.49 2.25 0.03 -2.14 16 16 C 0.11 1.34 5.87 -2.41 -0.01 1.33 16 17 C -0.09 -1.04 2.72 -89.22 -0.24 -1.28 16 18 H 0.09 0.99 7.71 -51.93 -0.40 0.59 16 19 C -0.12 -1.66 4.51 -26.73 -0.12 -1.78 16 20 C 0.15 2.90 6.13 -4.04 -0.02 2.87 16 21 N -0.73 -18.42 5.60 -59.91 -0.34 -18.76 16 22 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 26 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.63 5.29 -51.93 -0.27 0.36 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.26 -0.03 8.06 -52.49 -0.42 -0.45 16 36 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.05 7.75 -51.93 -0.40 0.64 16 38 H 0.09 1.19 7.88 -51.93 -0.41 0.78 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.95 7.98 -51.93 -0.41 0.53 16 41 H 0.02 0.37 7.59 -51.93 -0.39 -0.02 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 10.02 7.67 -40.82 -0.31 9.71 16 44 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -35.12 370.63 -6.15 -41.27 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.94 Total: 2.32 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.65 Total: 4.41 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.30 Total: -58.09 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.11 Total: -8.71 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.07 Total: -4.27 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.12 -6.15 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104683460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.577 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds