Wall clock time and date at job start Wed Apr 1 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.30339 * 2 1 4 4 C 1.54388 * 110.43399 * 237.76720 * 2 1 3 5 5 N 1.48152 * 104.61681 * 264.94794 * 4 2 1 6 6 C 1.34773 * 127.83559 * 140.38744 * 5 4 2 7 7 O 1.21685 * 119.99665 * 179.97438 * 6 5 4 8 8 C 1.46723 * 120.00191 * 359.97438 * 6 5 4 9 9 O 1.35335 * 126.64305 * 359.68515 * 8 6 5 10 10 C 1.33668 * 107.68553 * 179.87612 * 9 8 6 11 11 N 1.30623 * 109.15272 * 0.39266 * 10 9 8 12 12 C 1.33694 * 108.99080 * 359.75745 * 11 10 9 13 13 C 1.50701 * 126.26978 * 180.02562 * 12 11 10 14 14 F 1.39898 * 109.47535 * 29.97229 * 13 12 11 15 15 F 1.39900 * 109.47030 * 149.97363 * 13 12 11 16 16 C 1.48150 * 104.32113 * 320.41318 * 5 4 2 17 17 C 1.54280 * 110.34363 * 122.17450 * 2 1 3 18 18 H 1.08997 * 110.34585 * 359.97438 * 17 2 1 19 19 C 1.53005 * 110.34319 * 237.84592 * 17 2 1 20 20 C 1.53002 * 109.47347 * 175.00109 * 19 17 2 21 21 N 1.46494 * 109.47008 * 180.02562 * 20 19 17 22 22 C 1.36945 * 119.99612 * 180.02562 * 21 20 19 23 23 H 1.07999 * 120.00077 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99637 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47057 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47102 * 119.99824 * 26 24 22 29 29 H 1.48500 * 109.47389 * 240.00173 * 26 24 22 30 30 H 1.08999 * 109.47278 * 297.82759 * 1 2 3 31 31 H 1.08997 * 109.47014 * 57.82717 * 1 2 3 32 32 H 1.09001 * 109.46985 * 177.82382 * 1 2 3 33 33 H 1.09002 * 110.40733 * 23.73369 * 4 2 1 34 34 H 1.08997 * 110.41296 * 146.16696 * 4 2 1 35 35 H 1.07999 * 125.43063 * 180.15101 * 10 9 8 36 36 H 1.09000 * 109.46985 * 269.97107 * 13 12 11 37 37 H 1.08997 * 110.40598 * 280.79538 * 16 5 4 38 38 H 1.08995 * 110.40228 * 158.36693 * 16 5 4 39 39 H 1.09005 * 109.46988 * 55.00093 * 19 17 2 40 40 H 1.09004 * 109.47166 * 295.00481 * 19 17 2 41 41 H 1.08995 * 109.46742 * 59.99667 * 20 19 17 42 42 H 1.09002 * 109.46787 * 300.00388 * 20 19 17 43 43 H 0.96995 * 120.00290 * 0.27040 * 21 20 19 44 44 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2238 5 7 2.3178 -2.1429 -0.7212 6 6 2.0831 -3.3101 -1.3528 7 8 2.3443 -4.3632 -0.8018 8 6 1.5128 -3.3111 -2.7046 9 8 1.1679 -2.2262 -3.4366 10 6 0.6914 -2.6610 -4.6073 11 7 0.7206 -3.9668 -4.6235 12 6 1.2221 -4.4052 -3.4644 13 6 1.4289 -5.8450 -3.0701 14 9 1.6831 -6.6098 -4.2136 15 9 2.5171 -5.9374 -2.1958 16 6 2.8825 -1.9399 0.6333 17 6 2.0663 -0.7703 1.2244 18 1 1.2399 -1.1483 1.8262 19 6 2.9671 0.1335 2.0687 20 6 3.3868 -0.6082 3.3394 21 7 4.2487 0.2575 4.1479 22 6 4.7503 -0.1958 5.3389 23 1 4.5101 -1.1912 5.6822 24 6 5.5675 0.6243 6.1048 25 7 5.8599 1.8375 5.6866 26 14 6.2511 0.0064 7.7297 27 1 5.7769 -1.3800 7.9710 28 1 7.7353 0.0196 7.6793 29 1 5.7853 0.8880 8.8301 30 1 -0.3634 0.4797 0.9088 31 1 -0.3633 0.5472 -0.8698 32 1 -0.3633 -1.0269 -0.0390 33 1 1.3253 -0.7879 -2.0205 34 1 2.9969 -0.3225 -1.5779 35 1 0.3350 -2.0329 -5.4103 36 1 0.5324 -6.2185 -2.5751 37 1 3.9374 -1.6733 0.5692 38 1 2.7526 -2.8377 1.2376 39 1 2.4229 1.0384 2.3391 40 1 3.8542 0.4010 1.4943 41 1 3.9309 -1.5130 3.0689 42 1 2.4997 -0.8757 3.9136 43 1 4.4613 1.1528 3.8415 44 1 6.4306 2.4107 6.2220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104683460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:08 Heat of formation + Delta-G solvation = -116.518379 kcal Electronic energy + Delta-G solvation = -30193.719158 eV Core-core repulsion = 25590.213190 eV Total energy + Delta-G solvation = -4603.505969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.03159 -48.04508 -44.72483 -41.23658 -39.28563 -36.92852 -36.41096 -34.60420 -33.43103 -32.48116 -31.73718 -29.08664 -27.93484 -27.41901 -26.11863 -24.81101 -24.00097 -23.06048 -22.13071 -21.26882 -20.94193 -19.23175 -19.09986 -18.81809 -18.33372 -18.12926 -17.85618 -17.07681 -16.85438 -16.64860 -16.58863 -16.10711 -15.43290 -15.40425 -15.21110 -15.05595 -14.79677 -14.58165 -14.44779 -14.30659 -14.20351 -13.98348 -13.51149 -13.17040 -13.03266 -12.91487 -12.88382 -12.77476 -12.43231 -12.37149 -12.28575 -12.12765 -12.06095 -11.87970 -11.60697 -11.56914 -11.37117 -11.27040 -10.93645 -10.49716 -9.89108 -8.99890 -7.96507 -5.24829 -0.56855 1.06091 1.14071 1.46936 1.47452 1.57665 1.73433 1.76989 2.29459 2.55274 2.93055 3.10836 3.20890 3.37419 3.52408 3.57101 3.72272 3.75399 3.95925 4.00700 4.13012 4.18244 4.25240 4.28240 4.45400 4.49867 4.55001 4.60964 4.65841 4.79617 4.82673 4.89539 4.93571 5.03423 5.07040 5.16365 5.26262 5.38091 5.39338 5.49761 5.52103 6.13471 6.27180 6.27938 6.71382 7.33239 8.09960 8.32879 9.27196 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.002242 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.837924 B =12484.127495 C =13673.612675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.106 0.894 4 C 0.098 3.902 5 N -0.608 5.608 6 C 0.607 3.393 7 O -0.529 6.529 8 C -0.065 4.065 9 O -0.174 6.174 10 C 0.239 3.761 11 N -0.502 5.502 12 C -0.018 4.018 13 C 0.345 3.655 14 F -0.198 7.198 15 F -0.183 7.183 16 C 0.111 3.889 17 C -0.082 4.082 18 H 0.083 0.917 19 C -0.100 4.100 20 C 0.148 3.852 21 N -0.747 5.747 22 C -0.246 4.246 23 H 0.072 0.928 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.971 3.029 27 H -0.268 1.268 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.320 0.680 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.375 0.625 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 -5.875 -25.817 31.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.124 0.876 4 C -0.023 4.023 5 N -0.340 5.340 6 C 0.394 3.606 7 O -0.408 6.408 8 C -0.122 4.122 9 O -0.060 6.060 10 C 0.015 3.985 11 N -0.229 5.229 12 C -0.143 4.143 13 C 0.291 3.709 14 F -0.179 7.179 15 F -0.164 7.164 16 C -0.011 4.011 17 C -0.102 4.102 18 H 0.101 0.899 19 C -0.138 4.138 20 C 0.021 3.979 21 N -0.390 5.390 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.800 3.200 27 H -0.193 1.193 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.334 0.666 36 H 0.177 0.823 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.207 0.793 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.403 -7.013 -25.944 31.485 hybrid contribution 1.119 0.383 1.453 1.873 sum -15.284 -6.629 -24.491 29.620 Atomic orbital electron populations 1.21810 0.93249 1.01482 1.03010 1.22185 0.97134 1.00045 0.92154 0.87593 1.22940 1.02439 0.79308 0.97634 1.48895 1.61084 1.06061 1.17919 1.16145 0.78774 0.83285 0.82355 1.91017 1.53692 1.30741 1.65315 1.22514 1.09040 0.85330 0.95300 1.84657 1.60845 1.34172 1.26300 1.29821 0.91557 0.90189 0.86933 1.70284 1.19903 1.12304 1.20386 1.22543 1.02567 0.96918 0.92248 1.19777 0.90018 0.83839 0.77265 1.93007 1.95516 1.76689 1.52720 1.93169 1.58254 1.96272 1.68662 1.22540 0.97814 0.99135 0.81594 1.22046 0.97614 0.94317 0.96227 0.89888 1.21656 0.99276 0.98265 0.94648 1.20876 0.92294 0.93255 0.91447 1.42597 1.58387 1.15984 1.22050 1.19660 1.22502 0.98500 0.97084 0.90994 1.25550 1.01825 0.96697 1.02700 1.69807 1.42670 1.09085 1.40345 0.85102 0.77506 0.77737 0.79607 1.19293 1.21943 1.21789 0.92143 0.90464 0.93775 0.87689 0.89319 0.66606 0.82262 0.90404 0.91038 0.90958 0.91427 0.96520 0.96603 0.79287 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.91 71.98 0.64 -1.15 16 2 C -0.10 -1.45 3.30 -9.89 -0.03 -1.48 16 3 H 0.11 1.42 7.71 -2.39 -0.02 1.40 16 4 C 0.10 1.44 6.27 86.53 0.54 1.98 16 5 N -0.61 -13.18 3.32 -812.59 -2.69 -15.87 16 6 C 0.61 15.19 7.83 86.46 0.68 15.86 16 7 O -0.53 -16.78 13.40 -4.30 -0.06 -16.84 16 8 C -0.06 -1.27 6.97 24.05 0.17 -1.11 16 9 O -0.17 -2.10 8.01 -7.03 -0.06 -2.15 16 10 C 0.24 1.74 13.21 130.42 1.72 3.46 16 11 N -0.50 -8.15 11.21 -303.11 -3.40 -11.55 16 12 C -0.02 -0.37 6.78 41.83 0.28 -0.09 16 13 C 0.35 7.22 5.63 71.24 0.40 7.62 16 14 F -0.20 -4.54 17.29 44.97 0.78 -3.76 16 15 F -0.18 -5.09 13.49 44.97 0.61 -4.48 16 16 C 0.11 2.69 5.87 86.53 0.51 3.20 16 17 C -0.08 -1.77 2.72 -9.89 -0.03 -1.80 16 18 H 0.08 1.86 7.71 -2.39 -0.02 1.84 16 19 C -0.10 -2.79 4.51 30.60 0.14 -2.65 16 20 C 0.15 5.70 6.13 86.38 0.53 6.23 16 21 N -0.75 -37.90 5.60 -343.46 -1.92 -39.82 16 22 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 23 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 24 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 25 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 26 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.11 1.17 5.29 -2.39 -0.01 1.16 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.32 -2.01 8.06 -2.91 -0.02 -2.03 16 36 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.08 1.97 7.75 -2.39 -0.02 1.95 16 38 H 0.07 1.98 7.88 -2.39 -0.02 1.97 16 39 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.07 1.88 7.98 -2.38 -0.02 1.86 16 41 H 0.02 0.66 7.59 -2.39 -0.02 0.64 16 42 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.38 19.92 7.67 -92.71 -0.71 19.20 16 44 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -78.18 370.63 2.75 -75.43 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.33 Total: 16.28 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.86 Total: 13.12 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -7.73 Total: -126.14 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.11 Total: -19.00 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 1.38 Total: -8.25 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.18 2.75 -75.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104683460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.089 kcal (2) G-P(sol) polarization free energy of solvation -78.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds