Wall clock time and date at job start Wed Apr 1 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31162 * 1 3 3 Cl 1.73605 * 119.99384 * 2 1 4 4 C 1.50700 * 120.00514 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.46847 * 0.02562 * 4 2 1 6 6 C 1.53001 * 109.46823 * 120.00108 * 4 2 1 7 7 C 1.50697 * 109.47316 * 240.00448 * 4 2 1 8 8 O 1.21282 * 119.99851 * 239.09410 * 7 4 2 9 9 N 1.34776 * 120.00025 * 59.08393 * 7 4 2 10 10 C 1.47074 * 120.88102 * 355.21771 * 9 7 4 11 11 C 1.53702 * 108.27833 * 128.75005 * 10 9 7 12 12 N 1.46905 * 109.25490 * 54.07984 * 11 10 9 13 13 C 1.46896 * 110.99814 * 172.60462 * 12 11 10 14 14 C 1.50696 * 109.47471 * 294.30356 * 13 12 11 15 15 O 1.21286 * 120.00134 * 0.02562 * 14 13 12 16 16 N 1.34785 * 119.99920 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99705 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00350 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99717 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00117 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47192 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47162 * 120.00226 * 21 19 17 24 24 H 1.48500 * 109.47281 * 240.00169 * 21 19 17 25 25 C 1.46896 * 111.27016 * 296.75785 * 12 11 10 26 26 C 1.47076 * 120.87942 * 175.48976 * 9 7 4 27 27 H 1.08001 * 120.00630 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99616 * 179.72373 * 1 2 3 29 29 H 1.09000 * 109.47277 * 53.08208 * 5 4 2 30 30 H 1.09002 * 109.46777 * 173.08477 * 5 4 2 31 31 H 1.09003 * 109.47014 * 293.08455 * 5 4 2 32 32 H 1.08995 * 109.47113 * 64.88557 * 6 4 2 33 33 H 1.08999 * 109.46910 * 184.87920 * 6 4 2 34 34 H 1.08992 * 109.47405 * 304.87932 * 6 4 2 35 35 H 1.08998 * 109.63029 * 248.51613 * 10 9 7 36 36 H 1.09004 * 109.63455 * 9.09705 * 10 9 7 37 37 H 1.08996 * 109.64860 * 294.07801 * 11 10 9 38 38 H 1.09004 * 109.41906 * 173.94569 * 11 10 9 39 39 H 1.09005 * 109.47144 * 54.30576 * 13 12 11 40 40 H 1.09007 * 109.46888 * 174.29919 * 13 12 11 41 41 H 0.97000 * 119.99517 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00117 * 179.97438 * 20 19 17 43 43 H 1.08991 * 109.49310 * 303.14708 * 25 12 11 44 44 H 1.09004 * 109.49097 * 183.06171 * 25 12 11 45 45 H 1.09000 * 109.63421 * 350.90255 * 26 9 7 46 46 H 1.09006 * 109.62782 * 111.48151 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5036 0.0000 4 6 2.0652 -1.3050 0.0006 5 6 1.0710 -2.4680 0.0005 6 6 2.9449 -1.3865 -1.2486 7 6 2.9316 -1.3843 1.2311 8 8 4.1325 -1.5116 1.1200 9 7 2.3718 -1.3136 2.4551 10 6 0.9326 -1.0548 2.6131 11 6 0.3489 -2.1295 3.5440 12 7 1.1163 -2.1543 4.7965 13 6 0.4864 -3.0428 5.7822 14 6 -0.8519 -2.4787 6.1842 15 8 -1.2429 -1.4391 5.6971 16 7 -1.6149 -3.1301 7.0843 17 6 -2.8327 -2.6172 7.4496 18 1 -3.1809 -1.6915 7.0158 19 6 -3.6190 -3.2884 8.3779 20 7 -3.1952 -4.4146 8.9061 21 14 -5.2780 -2.5893 8.8762 22 1 -5.5209 -1.3207 8.1433 23 1 -6.3467 -3.5652 8.5433 24 1 -5.2856 -2.3263 10.3377 25 6 2.5137 -2.5392 4.5578 26 6 3.1849 -1.4873 3.6682 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0045 29 1 0.3661 -2.3433 -0.8214 30 1 1.6105 -3.4071 -0.1229 31 1 0.5283 -2.4821 0.9457 32 1 3.7089 -0.6103 -1.2063 33 1 3.4232 -2.3649 -1.2930 34 1 2.3293 -1.2424 -2.1365 35 1 0.7840 -0.0675 3.0503 36 1 0.4424 -1.1053 1.6408 37 1 0.4094 -3.1048 3.0611 38 1 -0.6932 -1.8944 3.7605 39 1 0.3474 -4.0311 5.3440 40 1 1.1263 -3.1219 6.6612 41 1 -1.3023 -3.9618 7.4736 42 1 -3.7440 -4.8830 9.5544 43 1 2.5440 -3.5087 4.0607 44 1 3.0415 -2.6011 5.5095 45 1 4.1847 -1.8239 3.3939 46 1 3.2487 -0.5406 4.2049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112885445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:11 Heat of formation + Delta-G solvation = -29.693152 kcal Electronic energy + Delta-G solvation = -28979.333006 eV Core-core repulsion = 24931.388742 eV Total energy + Delta-G solvation = -4047.944264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01427 -38.85612 -37.55326 -37.23897 -36.04999 -34.47845 -33.77467 -31.32072 -31.24483 -31.01647 -28.91288 -27.65792 -26.03987 -24.52009 -23.74537 -23.32563 -21.56680 -19.98962 -19.30237 -18.43811 -17.92557 -17.63401 -16.40351 -16.03411 -15.86010 -15.46750 -15.12251 -14.95835 -14.79430 -14.53822 -14.17933 -13.92157 -13.75025 -13.65011 -13.11446 -12.99074 -12.77479 -12.51204 -12.44569 -12.30859 -12.19061 -11.96342 -11.79848 -11.57839 -11.55651 -11.41651 -11.24290 -11.17787 -11.10587 -10.90841 -10.85413 -10.37719 -10.26708 -10.01296 -9.53153 -9.16839 -8.86793 -8.40434 -8.02876 -7.92829 -6.46082 -3.87023 1.47466 1.92107 2.46835 2.86203 3.12932 3.24128 3.30705 3.83822 3.90620 4.08147 4.18953 4.21776 4.50482 4.64964 4.84563 4.96544 5.04719 5.14192 5.17742 5.19855 5.23051 5.31572 5.32842 5.40929 5.45722 5.50404 5.51606 5.66229 5.70217 5.76407 5.79188 5.83309 5.86522 5.88540 5.97372 6.12880 6.15239 6.21244 6.45572 7.10263 7.26926 7.36017 7.51236 8.01843 8.03232 8.56644 9.13590 9.49624 10.00661 10.71619 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018639 B = 0.002611 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.871647 B =10720.504666 C =11404.544036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.067 4.067 3 Cl -0.074 7.074 4 C -0.043 4.043 5 C -0.160 4.160 6 C -0.125 4.125 7 C 0.529 3.471 8 O -0.538 6.538 9 N -0.603 5.603 10 C 0.092 3.908 11 C 0.038 3.962 12 N -0.513 5.513 13 C 0.046 3.954 14 C 0.443 3.557 15 O -0.578 6.578 16 N -0.563 5.563 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.041 3.959 26 C 0.118 3.882 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.034 0.966 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.673 2.772 -17.443 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.094 4.094 3 Cl -0.046 7.046 4 C -0.047 4.047 5 C -0.217 4.217 6 C -0.183 4.183 7 C 0.316 3.684 8 O -0.415 6.415 9 N -0.335 5.335 10 C -0.030 4.030 11 C -0.090 4.090 12 N -0.238 5.238 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.462 6.462 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.045 0.955 38 H 0.134 0.866 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.037 3.884 -17.480 20.527 hybrid contribution -0.670 -0.956 0.484 1.263 sum 9.367 2.928 -16.996 19.626 Atomic orbital electron populations 1.24311 0.93736 1.04794 0.98092 1.23003 0.93636 0.87266 1.05472 1.98393 1.78010 1.31361 1.96812 1.19962 0.96493 0.92451 0.95792 1.22339 0.98700 0.96567 1.04073 1.21666 0.98909 1.03775 0.93903 1.20146 0.88120 0.76103 0.83996 1.90671 1.14691 1.49970 1.86202 1.48151 1.09866 1.70161 1.05370 1.22680 0.79268 1.00170 1.00904 1.22772 1.01013 0.96316 0.88943 1.61492 1.00727 1.51685 1.09908 1.21861 0.96444 0.93980 0.96232 1.19706 0.86340 0.86961 0.84134 1.90474 1.73779 1.24596 1.57392 1.41886 1.17357 1.23319 1.37398 1.19740 0.93343 1.07947 1.21771 0.87811 1.25265 1.00100 0.95836 0.96731 1.69617 1.38799 1.15996 1.29829 0.85811 0.81244 0.78999 0.78358 1.19186 1.20780 1.20738 1.22510 0.90150 0.96354 0.99749 1.21713 0.94795 0.99663 0.84284 0.86054 0.84782 0.90367 0.90793 0.90196 0.91146 0.91253 0.91643 0.90096 0.87980 0.95505 0.86644 0.93472 0.89179 0.77497 0.91892 0.94743 0.89462 0.88913 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 11.53 28.97 0.33 -1.01 16 2 C -0.07 -0.64 3.84 -36.07 -0.14 -0.78 16 3 Cl -0.07 -0.81 28.32 -51.86 -1.47 -2.28 16 4 C -0.04 -0.43 0.64 -156.81 -0.10 -0.53 16 5 C -0.16 -1.28 7.05 37.16 0.26 -1.02 16 6 C -0.13 -1.17 7.62 37.16 0.28 -0.89 16 7 C 0.53 6.92 6.25 -10.99 -0.07 6.85 16 8 O -0.54 -8.55 15.40 5.56 0.09 -8.46 16 9 N -0.60 -7.74 3.00 -172.18 -0.52 -8.25 16 10 C 0.09 1.16 4.79 -3.36 -0.02 1.14 16 11 C 0.04 0.56 5.03 -3.46 -0.02 0.54 16 12 N -0.51 -8.02 4.37 -235.46 -1.03 -9.05 16 13 C 0.05 0.77 5.45 -4.98 -0.03 0.75 16 14 C 0.44 9.87 7.44 -10.98 -0.08 9.79 16 15 O -0.58 -14.55 13.91 5.55 0.08 -14.47 16 16 N -0.56 -13.68 5.29 -10.97 -0.06 -13.74 16 17 C -0.30 -8.03 9.68 -14.94 -0.14 -8.17 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 21 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 26 C 0.12 1.49 6.58 -3.60 -0.02 1.47 16 27 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.13 0.84 5.47 -52.48 -0.29 0.55 16 29 H 0.08 0.46 7.04 -51.93 -0.37 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.69 4.33 -51.93 -0.22 0.47 16 32 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.10 1.06 1.54 -51.93 -0.08 0.98 16 37 H 0.03 0.37 7.70 -51.93 -0.40 -0.03 16 38 H 0.12 2.03 5.76 -51.93 -0.30 1.73 16 39 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.09 1.38 7.97 -51.93 -0.41 0.96 16 41 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.98 7.99 -51.93 -0.41 0.57 16 45 H 0.09 1.16 7.09 -51.93 -0.37 0.79 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -31.50 372.28 -7.92 -39.42 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.47 Total: 9.87 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 0.14 Total: 9.12 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.88 Total: -54.27 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.16 Total: -22.94 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.47 Total: -2.28 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.50 -7.92 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112885445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.728 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds