Wall clock time and date at job start Wed Apr 1 2020 02:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 116.99867 * 2 1 4 4 O 1.20818 * 120.00018 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99827 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.54689 * 59.82294 * 5 3 2 7 7 N 1.46505 * 109.47067 * 300.17975 * 6 5 3 8 8 C 1.34768 * 119.99909 * 179.97438 * 7 6 5 9 9 O 1.21591 * 120.00405 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00148 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00469 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.47233 * 179.97438 * 11 10 8 13 13 O 1.21296 * 119.99800 * 0.02562 * 12 11 10 14 14 N 1.34767 * 119.99850 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00256 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99853 * 359.97438 * 15 14 12 17 17 C 1.38943 * 120.00430 * 180.02562 * 15 14 12 18 18 N 1.31405 * 120.00282 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47145 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47340 * 119.99780 * 19 17 15 22 22 H 1.48500 * 109.46972 * 239.99695 * 19 17 15 23 23 C 1.53207 * 109.54028 * 299.55878 * 5 3 2 24 24 C 1.53092 * 109.14859 * 183.15820 * 23 5 3 25 25 O 1.42905 * 109.42428 * 57.60656 * 24 23 5 26 26 C 1.42898 * 114.09851 * 298.83405 * 25 24 23 27 27 C 1.53097 * 109.41490 * 61.15689 * 26 25 24 28 28 H 1.09001 * 109.47142 * 299.99644 * 1 2 3 29 29 H 1.09001 * 109.47475 * 60.00048 * 1 2 3 30 30 H 1.09000 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46617 * 60.17328 * 6 5 3 32 32 H 1.08996 * 109.47306 * 180.17711 * 6 5 3 33 33 H 0.97000 * 119.99908 * 359.97438 * 7 6 5 34 34 H 0.97000 * 119.99669 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.47007 * 300.00136 * 11 10 8 36 36 H 1.09004 * 109.46619 * 59.99951 * 11 10 8 37 37 H 0.97005 * 120.00067 * 359.97438 * 14 12 11 38 38 H 0.97000 * 120.00927 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.53319 * 63.25338 * 23 5 3 40 40 H 1.08992 * 109.51748 * 303.05555 * 23 5 3 41 41 H 1.09002 * 109.48343 * 297.61643 * 24 23 5 42 42 H 1.08999 * 109.47546 * 177.59237 * 24 23 5 43 43 H 1.08995 * 109.48500 * 181.13987 * 26 25 24 44 44 H 1.09000 * 109.47974 * 301.16817 * 26 25 24 45 45 H 1.09003 * 109.51867 * 62.29966 * 27 26 25 46 46 H 1.08997 * 109.52106 * 182.48365 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1150 0.5781 -1.2474 7 7 3.6969 -0.8260 -1.2459 8 6 4.0658 -1.6399 -2.2547 9 8 4.7453 -1.2089 -3.1663 10 7 3.6817 -2.9318 -2.2532 11 6 4.0822 -3.8165 -3.3501 12 6 3.5281 -5.1972 -3.1097 13 8 2.8636 -5.4201 -2.1198 14 7 3.7701 -6.1839 -3.9952 15 6 3.2657 -7.4399 -3.7769 16 1 2.6747 -7.6386 -2.8951 17 6 3.5156 -8.4573 -4.6895 18 7 4.2351 -8.2157 -5.7622 19 14 2.8288 -10.1688 -4.3916 20 1 2.0594 -10.1792 -3.1216 21 1 1.9348 -10.5460 -5.5157 22 1 3.9469 -11.1418 -4.3005 23 6 4.1158 0.5902 1.2550 24 6 5.6387 0.7442 1.2852 25 8 5.9767 2.1323 1.2523 26 6 5.5297 2.8139 0.0786 27 6 4.0024 2.7433 -0.0004 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.7281 1.0715 -2.1391 32 1 5.2035 0.6331 -1.2450 33 1 3.1545 -1.1698 -0.5189 34 1 3.1400 -3.2758 -1.5258 35 1 3.6936 -3.4273 -4.2911 36 1 5.1701 -3.8653 -3.3986 37 1 4.3007 -6.0053 -4.7874 38 1 4.4094 -8.9258 -6.3996 39 1 3.8571 -0.4685 1.2356 40 1 3.6850 1.0553 2.1415 41 1 6.0720 0.2438 0.4192 42 1 6.0312 0.2960 2.1980 43 1 5.8436 3.8568 0.1221 44 1 5.9617 2.3407 -0.8033 45 1 3.5693 3.2519 0.8609 46 1 3.6625 3.2243 -0.9175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117288006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:52 Heat of formation + Delta-G solvation = -197.534037 kcal Electronic energy + Delta-G solvation = -30861.476256 eV Core-core repulsion = 26365.544700 eV Total energy + Delta-G solvation = -4495.931556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65434 -39.88448 -39.44025 -38.19731 -36.90824 -35.93245 -34.41983 -33.66845 -33.16827 -31.63211 -31.38070 -28.61912 -28.08875 -26.65869 -25.27701 -24.35154 -24.00679 -22.09046 -20.75791 -19.70663 -19.58774 -18.52465 -18.11045 -17.85470 -17.31361 -16.86719 -16.43234 -16.21645 -15.80634 -15.60417 -15.41878 -15.27017 -14.80756 -14.66341 -14.49792 -14.23647 -13.95879 -13.87332 -13.51741 -13.40356 -13.22492 -13.00375 -12.83868 -12.39414 -12.19189 -11.97381 -11.83787 -11.82202 -11.64437 -11.26355 -11.15457 -11.14555 -11.01305 -10.68963 -10.42194 -10.34087 -10.08756 -9.93441 -9.65737 -9.21483 -8.63521 -8.63019 -8.11043 -6.52506 -3.94531 1.76454 2.22794 2.72599 3.09156 3.21540 3.28041 3.36165 3.46828 3.74167 3.89585 4.03115 4.06466 4.11418 4.36765 4.45664 4.50070 4.76358 4.82917 4.83074 4.89237 4.90935 5.00540 5.13416 5.16302 5.20288 5.26184 5.27226 5.33199 5.35897 5.52949 5.59822 5.69166 5.89969 5.99429 6.00031 6.07168 6.39186 6.73378 6.76180 7.05317 7.32696 7.45136 7.91600 8.20745 8.44124 8.75813 9.03794 9.38684 9.86395 10.64484 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018358 B = 0.002226 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.890049 B =12577.310284 C =13294.848230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.473 3.527 4 O -0.500 6.500 5 C -0.063 4.063 6 C 0.148 3.852 7 N -0.746 5.746 8 C 0.706 3.294 9 O -0.599 6.599 10 N -0.722 5.722 11 C 0.128 3.872 12 C 0.429 3.571 13 O -0.598 6.598 14 N -0.550 5.550 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.145 4.145 24 C 0.060 3.940 25 O -0.379 6.379 26 C 0.057 3.943 27 C -0.132 4.132 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.403 0.597 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 20.199 12.264 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.315 3.685 4 O -0.387 6.387 5 C -0.064 4.064 6 C 0.023 3.977 7 N -0.406 5.406 8 C 0.406 3.594 9 O -0.478 6.478 10 N -0.380 5.380 11 C 0.000 4.000 12 C 0.215 3.785 13 O -0.484 6.484 14 N -0.184 5.184 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.183 4.183 24 C -0.017 4.017 25 O -0.297 6.297 26 C -0.020 4.020 27 C -0.170 4.170 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.240 0.760 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.402 20.650 12.049 23.912 hybrid contribution -1.047 -1.203 -0.078 1.597 sum -1.449 19.447 11.972 22.882 Atomic orbital electron populations 1.23346 0.75541 1.04350 1.02517 1.86411 1.24029 1.32973 1.83655 1.23454 0.91243 0.81655 0.72135 1.90669 1.66854 1.36332 1.44859 1.20966 0.87815 0.99233 0.98408 1.21208 1.00480 0.80835 0.95171 1.45110 1.58975 1.09830 1.26698 1.15793 0.80301 0.80983 0.82341 1.90911 1.43925 1.75728 1.37198 1.44743 1.57526 1.08009 1.27683 1.20791 1.00350 0.89056 0.89796 1.19762 0.86638 0.86076 0.86068 1.90491 1.44695 1.82918 1.30334 1.41795 1.46298 1.08827 1.21517 1.19766 1.30410 0.84763 1.08403 0.87646 1.25322 0.96807 1.00446 0.95176 1.69617 1.38071 1.34572 1.11216 0.85764 0.78597 0.81170 0.78590 1.19153 1.20627 1.20615 1.22291 0.98010 1.02104 0.95881 1.22647 0.92820 0.82825 1.03406 1.87967 1.78267 1.21844 1.41651 1.22710 0.92121 0.98522 0.88605 1.22130 0.97494 0.92191 1.05218 0.91824 0.91739 0.87496 0.90792 0.89621 0.75988 0.75553 0.90037 0.89977 0.77019 0.91634 0.89146 0.89908 0.91972 0.87902 0.87873 0.92145 0.89308 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.38 8.10 -39.26 -0.32 -3.70 16 3 C 0.47 4.82 6.55 36.01 0.24 5.05 16 4 O -0.50 -6.19 15.72 -18.74 -0.29 -6.49 16 5 C -0.06 -0.52 0.50 -155.46 -0.08 -0.60 16 6 C 0.15 1.47 4.01 -4.04 -0.02 1.45 16 7 N -0.75 -8.62 4.75 -65.22 -0.31 -8.93 16 8 C 0.71 11.02 8.57 -86.93 -0.74 10.28 16 9 O -0.60 -11.24 16.34 5.29 0.09 -11.15 16 10 N -0.72 -11.78 5.53 -66.41 -0.37 -12.15 16 11 C 0.13 2.34 6.15 -5.19 -0.03 2.30 16 12 C 0.43 9.64 7.85 -10.99 -0.09 9.56 16 13 O -0.60 -14.93 15.24 5.54 0.08 -14.85 16 14 N -0.55 -13.43 5.29 -10.97 -0.06 -13.49 16 15 C -0.30 -8.15 9.68 -14.94 -0.14 -8.30 16 16 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 17 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 18 N -0.89 -23.70 13.05 55.50 0.72 -22.97 16 19 Si 0.93 20.31 29.55 -169.99 -5.02 15.29 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.15 -1.04 4.73 -26.58 -0.13 -1.16 16 24 C 0.06 0.43 6.57 37.20 0.24 0.68 16 25 O -0.38 -3.23 10.77 -35.23 -0.38 -3.61 16 26 C 0.06 0.39 6.57 37.21 0.24 0.63 16 27 C -0.13 -0.98 4.23 -26.59 -0.11 -1.09 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.83 5.02 -51.93 -0.26 0.57 16 33 H 0.40 4.11 5.37 -40.82 -0.22 3.89 16 34 H 0.41 6.48 7.45 -40.82 -0.30 6.17 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.40 9.33 7.90 -40.82 -0.32 9.01 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.09 0.61 6.83 -51.93 -0.35 0.26 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.48 6.60 -51.93 -0.34 0.14 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.39 6.61 -51.93 -0.34 0.05 16 45 H 0.09 0.70 8.02 -51.93 -0.42 0.29 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -33.32 377.79 -6.11 -39.43 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -6.30 Total: 16.22 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 0.36 Total: 20.70 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.01 Total: -57.53 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.82 Total: -39.80 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.32 -6.11 -39.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117288006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.105 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds