Wall clock time and date at job start Wed Apr 1 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34644 * 116.99692 * 2 1 4 4 O 1.21508 * 119.99883 * 0.02562 * 3 2 1 5 5 N 1.34771 * 119.99896 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00154 * 359.97438 * 5 3 2 7 7 C 1.46496 * 120.00090 * 180.02562 * 5 3 2 8 8 C 1.52993 * 109.47551 * 89.99604 * 7 5 3 9 9 N 1.46906 * 109.47378 * 180.02562 * 8 7 5 10 10 C 1.46900 * 110.99728 * 66.04954 * 9 8 7 11 11 C 1.46905 * 111.00051 * 189.99991 * 9 8 7 12 12 N 1.46500 * 109.47132 * 169.99846 * 11 9 8 13 13 N 1.40169 * 126.14189 * 90.02510 * 12 11 9 14 14 C 1.32234 * 107.75528 * 180.02562 * 13 12 11 15 15 C 1.40126 * 125.92517 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00063 * 179.97438 * 15 14 13 17 17 C 1.40036 * 119.99635 * 359.97438 * 15 14 13 18 18 N 1.30793 * 120.00324 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99663 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47146 * 89.99944 * 19 17 15 21 21 H 1.48493 * 109.47086 * 209.99963 * 19 17 15 22 22 H 1.48501 * 109.46996 * 329.99953 * 19 17 15 23 23 N 1.38500 * 108.14902 * 0.02562 * 14 13 12 24 24 C 1.46503 * 125.83711 * 179.97438 * 23 14 13 25 25 C 1.34729 * 108.33076 * 359.73433 * 23 14 13 26 26 S 1.71195 * 125.97607 * 180.26291 * 25 23 14 27 27 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47598 * 299.99744 * 1 2 3 29 29 H 1.09002 * 109.47078 * 60.00232 * 1 2 3 30 30 H 1.09002 * 109.47436 * 270.00433 * 6 5 3 31 31 H 1.09000 * 109.46921 * 30.00264 * 6 5 3 32 32 H 1.08997 * 109.47207 * 149.99936 * 6 5 3 33 33 H 1.09004 * 109.46875 * 329.99811 * 7 5 3 34 34 H 1.09004 * 109.47522 * 209.99960 * 7 5 3 35 35 H 1.09004 * 109.46862 * 60.00198 * 8 7 5 36 36 H 1.09000 * 109.47250 * 300.00222 * 8 7 5 37 37 H 1.08996 * 109.47030 * 59.99921 * 10 9 8 38 38 H 1.08999 * 109.46702 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.46890 * 299.99929 * 10 9 8 40 40 H 1.08997 * 109.46807 * 290.00444 * 11 9 8 41 41 H 1.09000 * 109.46636 * 50.00310 * 11 9 8 42 42 H 0.96997 * 120.00323 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.47202 * 89.99659 * 24 23 14 44 44 H 1.08998 * 109.47717 * 210.00190 * 24 23 14 45 45 H 1.09001 * 109.46747 * 330.00234 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4090 1.2703 0.0005 6 6 4.2070 0.0417 0.0017 7 6 4.0741 2.5756 0.0011 8 6 4.3050 3.0298 1.4437 9 7 4.9714 4.3390 1.4442 10 6 4.0933 5.3768 0.8875 11 6 5.4221 4.6999 2.7951 12 7 6.2831 5.8829 2.7229 13 7 5.8630 7.2175 2.8067 14 6 6.9343 7.9851 2.6984 15 6 6.9489 9.3858 2.7316 16 1 7.8832 9.9186 2.6341 17 6 5.7519 10.0948 2.8911 18 7 4.6202 9.4496 3.0086 19 14 5.7713 11.9623 2.9361 20 1 5.6121 12.4923 1.5581 21 1 4.6547 12.4486 3.7855 22 1 7.0627 12.4303 3.5003 23 7 8.0394 7.1643 2.5453 24 6 9.4257 7.6122 2.3906 25 6 7.6223 5.8834 2.5682 26 16 8.6182 4.4987 2.4225 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.4044 -0.2624 1.0296 31 1 3.6587 -0.7480 -0.5119 32 1 5.1515 0.2214 -0.5119 33 1 3.4462 3.3035 -0.5129 34 1 5.0323 2.4955 -0.5124 35 1 4.9329 2.3019 1.9576 36 1 3.3469 3.1100 1.9572 37 1 3.1864 5.4459 1.4881 38 1 4.6114 6.3357 0.8993 39 1 3.8309 5.1186 -0.1384 40 1 4.5565 4.9179 3.4206 41 1 5.9814 3.8691 3.2254 42 1 3.7911 9.9407 3.1195 43 1 9.8916 7.6975 3.3723 44 1 9.9762 6.8892 1.7887 45 1 9.4406 8.5833 1.8958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118531642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:46 Heat of formation + Delta-G solvation = 21.442414 kcal Electronic energy + Delta-G solvation = -28189.498832 eV Core-core repulsion = 24178.108429 eV Total energy + Delta-G solvation = -4011.390402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86866 -40.65457 -37.97638 -36.69534 -35.66649 -34.22812 -33.78797 -30.93248 -29.76260 -28.03476 -27.80860 -26.81884 -26.51987 -25.79716 -24.01447 -22.02266 -21.01952 -20.82347 -20.38976 -18.22405 -17.74916 -17.31985 -16.83463 -16.61181 -15.95727 -15.70141 -15.43259 -15.01622 -14.94450 -14.62004 -14.34376 -14.21158 -13.86660 -13.59854 -13.20495 -13.04412 -12.93208 -12.53727 -12.32805 -12.23158 -12.21194 -12.00443 -11.81907 -11.58861 -11.51788 -11.27706 -11.05759 -10.98125 -10.81193 -10.64182 -10.61417 -10.50632 -10.08343 -9.54631 -9.24921 -9.01176 -8.88962 -8.13482 -7.06768 -6.74315 -6.64453 -5.15958 1.95619 2.35457 2.61222 2.66269 2.76897 2.90089 2.93797 3.38325 3.51377 3.63523 3.72071 4.08304 4.37012 4.82927 4.90077 4.91323 4.97530 5.00144 5.07492 5.23847 5.25571 5.33602 5.51542 5.54493 5.57028 5.58544 5.69053 5.85970 5.89124 5.90758 5.99306 6.07522 6.10791 6.24375 6.26756 6.56441 6.57901 6.78999 7.00505 7.11528 7.13772 7.16625 7.60640 7.77931 8.11282 8.22686 8.33817 9.14329 9.90721 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002818 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.028299 B = 9933.205496 C =11693.941903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.645 3.355 4 O -0.568 6.568 5 N -0.595 5.595 6 C 0.083 3.917 7 C 0.135 3.865 8 C 0.049 3.951 9 N -0.545 5.545 10 C 0.026 3.974 11 C 0.330 3.670 12 N -0.378 5.378 13 N -0.344 5.344 14 C 0.375 3.625 15 C -0.436 4.436 16 H 0.097 0.903 17 C 0.077 3.923 18 N -0.737 5.737 19 Si 0.928 3.072 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.259 1.259 23 N -0.517 5.517 24 C 0.101 3.899 25 C 0.481 3.519 26 S -0.708 6.708 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.028 0.972 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.285 0.715 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 -10.168 -4.416 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.399 3.601 4 O -0.456 6.456 5 N -0.335 5.335 6 C -0.060 4.060 7 C 0.014 3.986 8 C -0.081 4.081 9 N -0.271 5.271 10 C -0.122 4.122 11 C 0.118 3.882 12 N -0.164 5.164 13 N -0.176 5.176 14 C 0.126 3.874 15 C -0.478 4.478 16 H 0.115 0.885 17 C -0.150 4.150 18 N -0.362 5.362 19 Si 0.751 3.249 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.183 1.183 23 N -0.218 5.218 24 C -0.042 4.042 25 C 0.112 3.888 26 S -0.584 6.584 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.249 -10.805 -4.637 13.316 hybrid contribution -0.626 1.669 0.553 1.866 sum -6.875 -9.136 -4.084 12.142 Atomic orbital electron populations 1.23177 0.74605 1.03307 1.02772 1.86236 1.24019 1.31186 1.87119 1.18120 0.83330 0.82122 0.76555 1.91020 1.64237 1.34869 1.55522 1.46640 1.02149 1.08741 1.76008 1.21835 0.96125 0.85560 1.02489 1.21533 0.97958 0.81904 0.97241 1.22292 0.97525 0.90943 0.97293 1.61720 1.40369 1.02440 1.22610 1.22462 0.94967 0.96070 0.98736 1.21632 0.92324 0.84766 0.89461 1.49083 1.03209 1.07848 1.56212 1.79353 1.15294 0.81513 1.41401 1.21281 0.79326 0.93542 0.93259 1.18356 0.95956 0.85824 1.47661 0.88482 1.25832 0.94353 1.01875 0.92935 1.69863 0.98994 1.38288 1.29007 0.85967 0.79411 0.80153 0.79349 1.19070 1.19832 1.18293 1.45976 1.09697 1.04352 1.61801 1.21746 0.78583 1.01138 1.02767 1.22857 0.87812 0.89373 0.88758 1.92669 1.59470 1.25485 1.80726 0.88067 0.91859 0.91919 0.92250 0.90589 0.90301 0.89305 0.88419 0.90068 0.94289 0.95370 0.89636 0.91962 0.91761 0.87247 0.90354 0.91565 0.89195 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -4.14 9.39 -40.34 -0.38 -4.52 16 3 C 0.64 8.74 8.40 54.05 0.45 9.19 16 4 O -0.57 -9.50 15.71 -19.28 -0.30 -9.80 16 5 N -0.59 -7.06 2.87 -187.42 -0.54 -7.60 16 6 C 0.08 0.70 10.49 59.84 0.63 1.33 16 7 C 0.14 1.76 5.37 -4.05 -0.02 1.74 16 8 C 0.05 0.71 5.28 -3.82 -0.02 0.69 16 9 N -0.55 -9.62 4.90 -246.85 -1.21 -10.83 16 10 C 0.03 0.47 9.22 60.06 0.55 1.02 16 11 C 0.33 6.40 5.92 -63.31 -0.37 6.02 16 12 N -0.38 -8.68 3.34 -65.05 -0.22 -8.90 16 13 N -0.34 -8.61 9.69 31.21 0.30 -8.30 16 14 C 0.37 9.13 7.50 -155.28 -1.16 7.97 16 15 C -0.44 -10.04 8.98 -38.20 -0.34 -10.38 16 16 H 0.10 2.01 7.11 -52.49 -0.37 1.63 16 17 C 0.08 1.71 5.50 -17.32 -0.10 1.61 16 18 N -0.74 -17.58 11.90 55.55 0.66 -16.92 16 19 Si 0.93 16.50 29.56 -169.99 -5.03 11.48 16 20 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 21 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 23 N -0.52 -11.68 3.17 -124.66 -0.39 -12.07 16 24 C 0.10 1.79 10.64 59.85 0.64 2.43 16 25 C 0.48 11.40 7.84 -86.94 -0.68 10.72 16 26 S -0.71 -17.24 29.50 -107.50 -3.17 -20.41 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.57 7.37 -51.93 -0.38 0.19 16 32 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 33 H 0.09 1.28 5.83 -51.93 -0.30 0.98 16 34 H 0.10 1.19 7.89 -51.93 -0.41 0.78 16 35 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 36 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.87 6.64 -51.93 -0.34 1.53 16 39 H 0.06 1.02 6.47 -51.93 -0.34 0.69 16 40 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 41 H 0.11 2.07 7.43 -51.93 -0.39 1.68 16 42 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.59 7.62 -51.93 -0.40 1.19 16 45 H 0.08 1.31 7.32 -51.93 -0.38 0.93 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -32.23 389.93 -10.41 -42.63 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.65 Total: 5.52 kcal Atomic # 6 Polarization: 33.22 SS G_CDS: 0.64 Total: 33.86 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -1.40 Total: -64.63 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.68 Total: -14.32 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.03 Total: 11.48 kcal Atomic # 16 Polarization: -17.24 SS G_CDS: -3.17 Total: -20.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.23 -10.41 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118531642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.077 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds