Wall clock time and date at job start Wed Apr 1 2020 02:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34644 * 116.99692 * 2 1 4 4 O 1.21508 * 119.99883 * 0.02562 * 3 2 1 5 5 N 1.34771 * 119.99896 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00154 * 359.97438 * 5 3 2 7 7 C 1.46496 * 120.00090 * 180.02562 * 5 3 2 8 8 C 1.52993 * 109.47551 * 89.99604 * 7 5 3 9 9 N 1.46906 * 109.47378 * 180.02562 * 8 7 5 10 10 C 1.46900 * 110.99728 * 66.04954 * 9 8 7 11 11 C 1.46905 * 111.00051 * 189.99991 * 9 8 7 12 12 N 1.46500 * 109.47132 * 169.99846 * 11 9 8 13 13 N 1.40169 * 126.14189 * 90.02510 * 12 11 9 14 14 C 1.32234 * 107.75528 * 180.02562 * 13 12 11 15 15 C 1.40126 * 125.92517 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00063 * 179.97438 * 15 14 13 17 17 C 1.40036 * 119.99635 * 359.97438 * 15 14 13 18 18 N 1.30793 * 120.00324 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99663 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47146 * 89.99944 * 19 17 15 21 21 H 1.48493 * 109.47086 * 209.99963 * 19 17 15 22 22 H 1.48501 * 109.46996 * 329.99953 * 19 17 15 23 23 N 1.38500 * 108.14902 * 0.02562 * 14 13 12 24 24 C 1.46503 * 125.83711 * 179.97438 * 23 14 13 25 25 C 1.34729 * 108.33076 * 359.73433 * 23 14 13 26 26 S 1.71195 * 125.97607 * 180.26291 * 25 23 14 27 27 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47598 * 299.99744 * 1 2 3 29 29 H 1.09002 * 109.47078 * 60.00232 * 1 2 3 30 30 H 1.09002 * 109.47436 * 270.00433 * 6 5 3 31 31 H 1.09000 * 109.46921 * 30.00264 * 6 5 3 32 32 H 1.08997 * 109.47207 * 149.99936 * 6 5 3 33 33 H 1.09004 * 109.46875 * 329.99811 * 7 5 3 34 34 H 1.09004 * 109.47522 * 209.99960 * 7 5 3 35 35 H 1.09004 * 109.46862 * 60.00198 * 8 7 5 36 36 H 1.09000 * 109.47250 * 300.00222 * 8 7 5 37 37 H 1.08996 * 109.47030 * 59.99921 * 10 9 8 38 38 H 1.08999 * 109.46702 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.46890 * 299.99929 * 10 9 8 40 40 H 1.08997 * 109.46807 * 290.00444 * 11 9 8 41 41 H 1.09000 * 109.46636 * 50.00310 * 11 9 8 42 42 H 0.96997 * 120.00323 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.47202 * 89.99659 * 24 23 14 44 44 H 1.08998 * 109.47717 * 210.00190 * 24 23 14 45 45 H 1.09001 * 109.46747 * 330.00234 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4090 1.2703 0.0005 6 6 4.2070 0.0417 0.0017 7 6 4.0741 2.5756 0.0011 8 6 4.3050 3.0298 1.4437 9 7 4.9714 4.3390 1.4442 10 6 4.0933 5.3768 0.8875 11 6 5.4221 4.6999 2.7951 12 7 6.2831 5.8829 2.7229 13 7 5.8630 7.2175 2.8067 14 6 6.9343 7.9851 2.6984 15 6 6.9489 9.3858 2.7316 16 1 7.8832 9.9186 2.6341 17 6 5.7519 10.0948 2.8911 18 7 4.6202 9.4496 3.0086 19 14 5.7713 11.9623 2.9361 20 1 5.6121 12.4923 1.5581 21 1 4.6547 12.4486 3.7855 22 1 7.0627 12.4303 3.5003 23 7 8.0394 7.1643 2.5453 24 6 9.4257 7.6122 2.3906 25 6 7.6223 5.8834 2.5682 26 16 8.6182 4.4987 2.4225 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.4044 -0.2624 1.0296 31 1 3.6587 -0.7480 -0.5119 32 1 5.1515 0.2214 -0.5119 33 1 3.4462 3.3035 -0.5129 34 1 5.0323 2.4955 -0.5124 35 1 4.9329 2.3019 1.9576 36 1 3.3469 3.1100 1.9572 37 1 3.1864 5.4459 1.4881 38 1 4.6114 6.3357 0.8993 39 1 3.8309 5.1186 -0.1384 40 1 4.5565 4.9179 3.4206 41 1 5.9814 3.8691 3.2254 42 1 3.7911 9.9407 3.1195 43 1 9.8916 7.6975 3.3723 44 1 9.9762 6.8892 1.7887 45 1 9.4406 8.5833 1.8958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118531642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:45 Heat of formation + Delta-G solvation = 2.169995 kcal Electronic energy + Delta-G solvation = -28190.334546 eV Core-core repulsion = 24178.108429 eV Total energy + Delta-G solvation = -4012.226117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62192 -41.65013 -39.23315 -37.80558 -36.76793 -35.89863 -35.42025 -32.60609 -31.03397 -29.49758 -28.66434 -28.27395 -27.88317 -27.04487 -25.39167 -23.51547 -22.66503 -22.42266 -21.42907 -19.47246 -19.16923 -18.47800 -18.28064 -17.70713 -17.42437 -17.39519 -16.83339 -16.50772 -16.38112 -16.12795 -15.38675 -15.25335 -15.08308 -14.96818 -14.52882 -14.22974 -13.89402 -13.80185 -13.70981 -13.44463 -13.36764 -13.16120 -13.07223 -12.97581 -12.94581 -12.77105 -12.66560 -12.40103 -12.02588 -11.99764 -11.82618 -11.72289 -11.71624 -11.35507 -10.92483 -10.66634 -9.99721 -9.57545 -8.79411 -8.61534 -8.52304 -6.96490 0.54099 0.84246 1.06986 1.28282 1.44735 1.59954 1.61486 1.69064 1.86034 2.12709 2.41970 2.73734 3.04954 3.10709 3.55660 3.80404 3.94032 4.04028 4.09519 4.26602 4.32223 4.32944 4.33977 4.36551 4.45287 4.48375 4.58511 4.62581 4.66421 4.69131 4.73334 4.78738 4.92999 4.96410 5.01368 5.09922 5.18384 5.27149 5.29412 5.64803 5.65703 5.94657 6.10919 6.17212 6.49588 6.57531 7.11718 7.34237 8.24047 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002818 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.028299 B = 9933.205496 C =11693.941903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.368 6.368 3 C 0.640 3.360 4 O -0.608 6.608 5 N -0.592 5.592 6 C 0.079 3.921 7 C 0.143 3.857 8 C 0.057 3.943 9 N -0.547 5.547 10 C 0.041 3.959 11 C 0.328 3.672 12 N -0.376 5.376 13 N -0.371 5.371 14 C 0.353 3.647 15 C -0.449 4.449 16 H 0.119 0.881 17 C 0.036 3.964 18 N -0.775 5.775 19 Si 1.005 2.995 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.246 1.246 23 N -0.518 5.518 24 C 0.095 3.905 25 C 0.468 3.532 26 S -0.730 6.730 27 H 0.139 0.861 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.021 0.979 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.291 0.709 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 -10.102 -4.739 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.281 6.281 3 C 0.395 3.605 4 O -0.499 6.499 5 N -0.332 5.332 6 C -0.063 4.063 7 C 0.021 3.979 8 C -0.072 4.072 9 N -0.273 5.273 10 C -0.107 4.107 11 C 0.116 3.884 12 N -0.162 5.162 13 N -0.204 5.204 14 C 0.105 3.895 15 C -0.491 4.491 16 H 0.137 0.863 17 C -0.187 4.187 18 N -0.400 5.400 19 Si 0.824 3.176 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.169 1.169 23 N -0.219 5.219 24 C -0.046 4.046 25 C 0.098 3.902 26 S -0.607 6.607 27 H 0.157 0.843 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.752 -10.796 -4.965 13.202 hybrid contribution -0.837 1.590 0.656 1.913 sum -6.589 -9.206 -4.309 12.114 Atomic orbital electron populations 1.23492 0.72981 1.05672 1.02346 1.86250 1.25572 1.29635 1.86663 1.18347 0.83746 0.82275 0.76136 1.90992 1.65252 1.36299 1.57377 1.46710 1.01960 1.09323 1.75184 1.22062 0.96409 0.84329 1.03456 1.21362 0.98193 0.82404 0.95931 1.22318 0.96950 0.89420 0.98521 1.61721 1.40697 1.03467 1.21446 1.22242 0.94053 0.94685 0.99720 1.21774 0.92072 0.83998 0.90508 1.49372 1.03380 1.08051 1.55358 1.79295 1.16361 0.82433 1.42300 1.21684 0.79790 0.94313 0.93725 1.18900 0.97349 0.85557 1.47254 0.86344 1.26864 0.93502 1.06665 0.91675 1.69964 0.99912 1.40511 1.29608 0.84832 0.79775 0.73692 0.79325 1.18691 1.19855 1.16910 1.46255 1.10909 1.03668 1.61020 1.22031 0.76480 1.02125 1.03969 1.22888 0.88031 0.89734 0.89591 1.92580 1.59806 1.26234 1.82079 0.84263 0.92513 0.92210 0.91437 0.89371 0.88873 0.90935 0.87178 0.88741 0.95155 0.96029 0.93266 0.90228 0.91821 0.86685 0.89875 0.90046 0.89207 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 10.56 113.37 1.20 1.93 16 2 O -0.37 -7.72 9.39 -55.54 -0.52 -8.24 16 3 C 0.64 17.01 8.40 129.79 1.09 18.10 16 4 O -0.61 -20.58 15.71 19.82 0.31 -20.26 16 5 N -0.59 -13.38 2.87 -977.29 -2.81 -16.18 16 6 C 0.08 1.17 10.49 127.77 1.34 2.51 16 7 C 0.14 3.63 5.37 86.38 0.46 4.09 16 8 C 0.06 1.62 5.28 86.30 0.46 2.07 16 9 N -0.55 -19.48 4.90 -934.88 -4.58 -24.06 16 10 C 0.04 1.55 9.22 127.69 1.18 2.72 16 11 C 0.33 12.92 5.92 170.80 1.01 13.93 16 12 N -0.38 -17.58 3.34 -359.72 -1.20 -18.78 16 13 N -0.37 -18.98 9.69 -55.17 -0.53 -19.51 16 14 C 0.35 17.27 7.50 133.53 1.00 18.28 16 15 C -0.45 -20.31 8.98 23.16 0.21 -20.11 16 16 H 0.12 4.66 7.11 -2.91 -0.02 4.64 16 17 C 0.04 1.58 5.50 85.28 0.47 2.05 16 18 N -0.78 -37.31 11.90 21.84 0.26 -37.05 16 19 Si 1.00 32.59 29.56 68.60 2.03 34.62 16 20 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 21 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 22 H -0.25 -7.42 7.11 99.48 0.71 -6.71 16 23 N -0.52 -23.27 3.17 -548.31 -1.74 -25.00 16 24 C 0.10 3.28 10.64 127.77 1.36 4.64 16 25 C 0.47 22.31 7.84 179.06 1.40 23.71 16 26 S -0.73 -35.40 29.50 -56.49 -1.67 -37.07 16 27 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.11 7.37 -2.39 -0.02 1.10 16 32 H 0.09 1.14 7.89 -2.39 -0.02 1.12 16 33 H 0.07 2.10 5.83 -2.38 -0.01 2.08 16 34 H 0.11 2.53 7.89 -2.39 -0.02 2.51 16 35 H 0.09 2.45 7.93 -2.38 -0.02 2.43 16 36 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.05 2.22 6.64 -2.39 -0.02 2.21 16 39 H 0.08 2.67 6.47 -2.39 -0.02 2.65 16 40 H 0.06 2.49 8.12 -2.39 -0.02 2.47 16 41 H 0.12 4.37 7.43 -2.39 -0.02 4.35 16 42 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.09 3.09 7.62 -2.39 -0.02 3.07 16 45 H 0.11 3.12 7.32 -2.39 -0.02 3.10 16 Total: -1.00 -70.19 389.93 1.73 -68.46 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 1.00 Total: 29.17 kcal Atomic # 6 Polarization: 62.74 SS G_CDS: 11.18 Total: 73.91 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -10.60 Total: -140.58 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.21 Total: -28.51 kcal Atomic # 14 Polarization: 32.59 SS G_CDS: 2.03 Total: 34.62 kcal Atomic # 16 Polarization: -35.40 SS G_CDS: -1.67 Total: -37.07 kcal Total: -70.19 1.73 -68.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118531642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.631 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds