Wall clock time and date at job start Wed Apr 1 2020 02:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.44911 * 2 1 4 4 C 1.53049 * 109.45637 * 240.03793 * 2 1 3 5 5 C 1.53191 * 109.31152 * 178.61194 * 4 2 1 6 6 N 1.46934 * 108.77390 * 54.63435 * 5 4 2 7 7 C 1.34779 * 120.62864 * 126.37202 * 6 5 4 8 8 O 1.21680 * 119.99789 * 173.92673 * 7 6 5 9 9 C 1.46716 * 120.00050 * 353.92357 * 7 6 5 10 10 O 1.35348 * 126.64335 * 352.90428 * 9 7 6 11 11 C 1.33663 * 107.68291 * 179.97438 * 10 9 7 12 12 N 1.30622 * 109.15474 * 0.02562 * 11 10 9 13 13 C 1.33682 * 108.99523 * 359.72613 * 12 11 10 14 14 C 1.50702 * 126.27722 * 180.27227 * 13 12 11 15 15 F 1.39898 * 109.47404 * 120.19103 * 14 13 12 16 16 F 1.39895 * 109.47455 * 240.19276 * 14 13 12 17 17 C 1.46921 * 118.73990 * 306.39052 * 6 5 4 18 18 C 1.53038 * 109.46218 * 119.96946 * 2 1 3 19 19 H 1.08998 * 109.52375 * 61.42016 * 18 2 1 20 20 C 1.52994 * 109.49687 * 301.33672 * 18 2 1 21 21 N 1.46503 * 109.47002 * 175.16522 * 20 18 2 22 22 C 1.36940 * 119.99697 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00182 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99886 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99889 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00110 * 179.72197 * 24 22 21 27 27 H 1.48504 * 109.47236 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47037 * 120.00217 * 26 24 22 29 29 H 1.48496 * 109.47555 * 240.00079 * 26 24 22 30 30 H 1.09008 * 109.46717 * 300.02765 * 1 2 3 31 31 H 1.08996 * 109.47674 * 60.03543 * 1 2 3 32 32 H 1.09006 * 109.46941 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.49830 * 58.66014 * 4 2 1 34 34 H 1.09002 * 109.52161 * 298.57599 * 4 2 1 35 35 H 1.09004 * 109.58759 * 294.84738 * 5 4 2 36 36 H 1.08996 * 109.70661 * 174.48859 * 5 4 2 37 37 H 1.08004 * 125.42130 * 180.02562 * 11 10 9 38 38 H 1.08997 * 109.46735 * 0.19074 * 14 13 12 39 39 H 1.09005 * 109.58884 * 293.82411 * 17 6 5 40 40 H 1.08999 * 109.59012 * 173.39862 * 17 6 5 41 41 H 1.08988 * 109.47543 * 55.16274 * 20 18 2 42 42 H 1.09001 * 109.47008 * 295.15670 * 20 18 2 43 43 H 0.96996 * 120.00009 * 359.97438 * 21 20 18 44 44 H 0.97001 * 120.00370 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6885 -1.2645 6 7 4.0678 -1.2488 -0.0002 7 6 4.9615 -2.2578 -0.0003 8 8 5.4485 -2.6393 1.0475 9 6 5.3469 -2.8962 -1.2638 10 8 4.7977 -2.6753 -2.4810 11 6 5.4347 -3.4539 -3.3612 12 7 6.3516 -4.1444 -2.7377 13 6 6.3315 -3.8227 -1.4403 14 6 7.2301 -4.3838 -0.3685 15 9 7.9586 -3.3448 0.2205 16 9 6.4532 -5.0193 0.6060 17 6 3.5714 -0.6887 1.2641 18 6 2.0399 -0.7208 1.2500 19 1 1.6979 -1.7557 1.2387 20 6 1.5028 -0.0190 2.4989 21 7 1.8952 -0.7752 3.6908 22 6 1.5251 -0.3349 4.9335 23 1 0.9445 0.5700 5.0351 24 6 1.8964 -1.0517 6.0628 25 7 2.6046 -2.1543 5.9391 26 14 1.3983 -0.4470 7.7585 27 1 0.6178 0.8095 7.6265 28 1 0.5653 -1.4787 8.4270 29 1 2.6153 -0.1912 8.5702 30 1 -0.3633 0.5143 0.8898 31 1 -0.3634 0.5132 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6571 -0.2207 -2.1399 34 1 1.6978 -1.7556 -1.2390 35 1 3.9142 0.3410 -1.3676 36 1 3.9437 -1.2829 -2.0988 37 1 5.2247 -3.5040 -4.4194 38 1 7.9179 -5.1041 -0.8114 39 1 3.9143 0.3409 1.3672 40 1 3.9418 -1.2846 2.0982 41 1 0.4157 0.0364 2.4454 42 1 1.9157 0.9882 2.5556 43 1 2.4171 -1.5877 3.5996 44 1 2.8644 -2.6550 6.7282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133113847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:16 Heat of formation + Delta-G solvation = -84.820779 kcal Electronic energy + Delta-G solvation = -31340.793980 eV Core-core repulsion = 26738.662522 eV Total energy + Delta-G solvation = -4602.131458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.94770 -46.95194 -44.01030 -40.21064 -38.10236 -35.91147 -34.91158 -33.75166 -32.02671 -31.44033 -29.84306 -28.54664 -27.19115 -25.66695 -24.42871 -23.28683 -23.13168 -22.20812 -21.28819 -20.58308 -19.55315 -18.21927 -17.70575 -17.41794 -17.32404 -16.94282 -16.83004 -16.22228 -15.92633 -15.17535 -14.87691 -14.77387 -14.43547 -14.24008 -13.93364 -13.80831 -13.56730 -13.28707 -13.22589 -13.05176 -12.83561 -12.69632 -12.53167 -12.08169 -11.95439 -11.84961 -11.67856 -11.44818 -11.21588 -11.01129 -10.84094 -10.82802 -10.64535 -10.38672 -10.22853 -10.15247 -9.87577 -9.63831 -9.59226 -8.84661 -8.65523 -6.86657 -5.69469 -2.99543 0.30946 1.82914 1.87901 2.82227 2.86203 3.03678 3.47607 3.52389 3.55404 3.84709 4.02268 4.08851 4.49205 4.61783 4.68821 4.76559 4.82546 4.90241 4.91363 5.03504 5.09348 5.20560 5.28079 5.55676 5.60168 5.60717 5.64175 5.72843 5.81010 5.86344 5.90689 5.98360 6.10612 6.18751 6.28144 6.40029 6.48220 6.51447 6.78044 6.85809 6.89823 7.22579 7.75228 7.88888 8.47910 9.59050 10.16418 10.50377 11.52784 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.003541 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.067942 B = 7906.316092 C = 9932.688501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.126 4.126 5 C 0.090 3.910 6 N -0.596 5.596 7 C 0.588 3.412 8 O -0.478 6.478 9 C -0.036 4.036 10 O -0.176 6.176 11 C 0.193 3.807 12 N -0.470 5.470 13 C -0.021 4.021 14 C 0.360 3.640 15 F -0.184 7.184 16 F -0.177 7.177 17 C 0.122 3.878 18 C -0.102 4.102 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.261 0.739 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.028 0.972 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -0.089 -25.413 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.164 4.164 5 C -0.032 4.032 6 N -0.329 5.329 7 C 0.372 3.628 8 O -0.352 6.352 9 C -0.093 4.093 10 O -0.062 6.062 11 C -0.032 4.032 12 N -0.197 5.197 13 C -0.145 4.145 14 C 0.305 3.695 15 F -0.165 7.165 16 F -0.158 7.158 17 C 0.001 3.999 18 C -0.122 4.122 19 H 0.094 0.906 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.277 0.723 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.052 -0.573 -24.948 25.461 hybrid contribution -0.655 0.513 0.965 1.274 sum 4.397 -0.059 -23.984 24.383 Atomic orbital electron populations 1.21877 0.94774 1.02022 1.01795 1.21116 0.96149 0.99408 0.93788 0.90926 1.21961 0.94071 1.01716 0.98637 1.22283 0.95340 0.99684 0.85893 1.48060 1.41920 1.34021 1.08859 1.16571 0.80795 0.80499 0.84910 1.91053 1.52638 1.62684 1.28863 1.23461 0.98301 1.02388 0.85154 1.84739 1.51875 1.52877 1.16735 1.28502 0.88856 0.87880 0.97957 1.70154 1.21273 1.24495 1.03741 1.22443 0.99442 0.99055 0.93600 1.19198 0.85339 0.84181 0.80739 1.93068 1.77205 1.60845 1.85348 1.93112 1.76711 1.81385 1.64546 1.21891 0.93915 0.99550 0.84561 1.21743 0.94058 1.00973 0.95421 0.90637 1.20713 0.96893 0.94053 0.85198 1.42424 1.65315 1.29268 1.00805 1.19228 1.28013 1.06409 0.83731 0.91194 1.24756 1.00777 0.97485 0.97804 1.69680 1.42169 1.17326 1.28449 0.86149 0.77614 0.77714 0.84883 1.20614 1.21922 1.21857 0.91519 0.93174 0.92748 0.90640 0.91439 0.90875 0.88259 0.72307 0.85262 0.90933 0.87399 0.95399 0.96308 0.78137 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.81 37.16 0.33 -1.33 16 2 C -0.09 -1.01 2.23 -90.58 -0.20 -1.21 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.21 5.36 -26.61 -0.14 -1.36 16 5 C 0.09 0.92 6.33 -3.71 -0.02 0.89 16 6 N -0.60 -8.51 2.97 -174.29 -0.52 -9.03 16 7 C 0.59 9.50 7.65 -12.84 -0.10 9.41 16 8 O -0.48 -9.64 13.43 5.21 0.07 -9.57 16 9 C -0.04 -0.47 6.86 -36.84 -0.25 -0.72 16 10 O -0.18 -1.61 7.33 4.41 0.03 -1.58 16 11 C 0.19 1.30 13.21 52.25 0.69 1.99 16 12 N -0.47 -4.78 11.26 -10.88 -0.12 -4.91 16 13 C -0.02 -0.27 6.59 -82.47 -0.54 -0.81 16 14 C 0.36 4.67 5.10 36.01 0.18 4.86 16 15 F -0.18 -2.78 16.46 2.25 0.04 -2.74 16 16 F -0.18 -2.84 15.98 2.25 0.04 -2.81 16 17 C 0.12 2.02 5.50 -3.71 -0.02 2.00 16 18 C -0.10 -1.63 1.92 -90.50 -0.17 -1.80 16 19 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.16 3.13 5.41 -4.04 -0.02 3.10 16 21 N -0.73 -18.76 5.38 -59.91 -0.32 -19.08 16 22 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 26 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H 0.07 0.83 6.30 -51.92 -0.33 0.50 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.89 3.83 -54.63 -0.21 0.68 16 37 H 0.26 0.17 8.06 -52.48 -0.42 -0.25 16 38 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.11 2.23 6.24 -51.93 -0.32 1.91 16 41 H 0.03 0.55 6.15 -51.94 -0.32 0.23 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 10.57 6.89 -40.82 -0.28 10.29 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -35.95 362.23 -5.81 -41.76 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.66 Total: 5.41 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.52 Total: 7.53 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.24 Total: -61.31 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.10 Total: -11.15 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.07 Total: -5.55 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.95 -5.81 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133113847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.062 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds