Wall clock time and date at job start Wed Apr 1 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46264 * 2 1 4 4 C 1.53038 * 109.45092 * 119.96706 * 2 1 3 5 5 C 1.53628 * 109.23974 * 58.52712 * 4 2 1 6 6 N 1.46928 * 108.54358 * 54.85743 * 5 4 2 7 7 C 1.34773 * 120.63400 * 126.37216 * 6 5 4 8 8 O 1.21678 * 120.00187 * 174.63618 * 7 6 5 9 9 C 1.46725 * 119.99496 * 354.90747 * 7 6 5 10 10 O 1.35338 * 126.65016 * 5.99390 * 9 7 6 11 11 C 1.33657 * 107.68869 * 179.84071 * 10 9 7 12 12 N 1.30614 * 109.15664 * 0.43591 * 11 10 9 13 13 C 1.33695 * 108.99233 * 359.72970 * 12 11 10 14 14 C 1.50699 * 126.27400 * 179.97438 * 13 12 11 15 15 F 1.39896 * 109.47623 * 120.02727 * 14 13 12 16 16 F 1.39901 * 109.46864 * 240.02504 * 14 13 12 17 17 C 1.46932 * 118.73522 * 306.09173 * 6 5 4 18 18 C 1.53046 * 109.45997 * 240.03246 * 2 1 3 19 19 H 1.08997 * 109.49442 * 181.40387 * 18 2 1 20 20 C 1.52999 * 109.52362 * 61.32231 * 18 2 1 21 21 N 1.46501 * 109.47028 * 175.14815 * 20 18 2 22 22 C 1.36938 * 120.00095 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99558 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00072 * 179.97438 * 22 21 20 25 25 N 1.31609 * 119.99945 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99870 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47302 * 89.99752 * 26 24 22 28 28 H 1.48500 * 109.46823 * 210.00027 * 26 24 22 29 29 H 1.48498 * 109.47154 * 329.99606 * 26 24 22 30 30 H 1.09004 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46811 * 299.96627 * 1 2 3 32 32 H 1.08996 * 109.47302 * 59.97132 * 1 2 3 33 33 H 1.08999 * 109.49708 * 178.59921 * 4 2 1 34 34 H 1.08993 * 109.49947 * 298.70054 * 4 2 1 35 35 H 1.08995 * 109.73788 * 295.11824 * 5 4 2 36 36 H 1.08998 * 109.66386 * 174.54703 * 5 4 2 37 37 H 1.08004 * 125.42276 * 180.14452 * 11 10 9 38 38 H 1.08998 * 109.47302 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.58154 * 173.65044 * 17 6 5 40 40 H 1.08998 * 109.58331 * 294.07704 * 17 6 5 41 41 H 1.08996 * 109.46942 * 295.14844 * 20 18 2 42 42 H 1.09001 * 109.46775 * 55.14839 * 20 18 2 43 43 H 0.97004 * 119.99750 * 359.97438 * 21 20 18 44 44 H 0.97001 * 119.99916 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4941 -2.1569 1.2642 6 7 1.8621 -2.8089 0.0000 7 6 2.5149 -3.9880 -0.0001 8 8 2.7278 -4.5655 -1.0496 9 6 2.9635 -4.5781 1.2662 10 8 2.6983 -4.1175 2.5109 11 6 3.2868 -4.9420 3.3829 12 7 3.9102 -5.8845 2.7280 13 6 3.7334 -5.6932 1.4166 14 6 4.2846 -6.5524 0.3080 15 9 3.2286 -7.0709 -0.4491 16 9 5.1118 -5.7793 -0.5137 17 6 1.4993 -2.1541 -1.2643 18 6 2.0398 -0.7208 -1.2501 19 1 3.1295 -0.7430 -1.2382 20 6 1.5577 0.0192 -2.4994 21 7 2.1407 -0.6028 -3.6908 22 6 1.8504 -0.1067 -4.9338 23 1 1.1920 0.7433 -5.0356 24 6 2.4033 -0.6957 -6.0626 25 7 2.1238 -0.2193 -7.2572 26 14 3.5427 -2.1654 -5.8863 27 1 2.7455 -3.4175 -5.9276 28 1 4.5248 -2.1668 -7.0001 29 1 4.2636 -2.0802 -4.5908 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 3.1293 -0.7430 1.2384 34 1 1.6955 -0.1935 2.1398 35 1 0.4088 -2.1375 1.3630 36 1 1.9293 -2.7064 2.0989 37 1 3.2559 -4.8419 4.4578 38 1 4.8615 -7.3721 0.7361 39 1 1.9379 -2.7018 -2.0984 40 1 0.4144 -2.1345 -1.3674 41 1 0.4706 -0.0345 -2.5566 42 1 1.8677 1.0628 -2.4457 43 1 2.7330 -1.3655 -3.5992 44 1 2.5105 -0.6307 -8.0460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133113849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:21 Heat of formation + Delta-G solvation = -77.594881 kcal Electronic energy + Delta-G solvation = -31676.197298 eV Core-core repulsion = 27074.379179 eV Total energy + Delta-G solvation = -4601.818119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.05471 -47.06051 -44.11126 -40.48780 -38.35674 -36.01618 -35.07462 -33.71123 -32.07627 -31.55100 -30.27857 -28.13485 -27.41346 -25.91832 -25.14923 -23.79968 -23.05108 -22.39879 -21.19794 -20.75092 -18.93934 -18.16768 -17.76127 -17.61784 -17.43542 -17.23646 -16.95229 -16.40801 -16.05498 -15.32548 -15.25366 -15.09197 -14.51909 -14.40440 -13.98635 -13.92502 -13.73803 -13.47717 -13.38080 -13.14010 -12.95137 -12.72386 -12.57198 -12.20558 -12.13220 -11.86252 -11.59499 -11.57378 -11.37377 -11.25684 -11.05417 -10.85075 -10.73430 -10.50221 -10.36196 -10.17069 -9.99838 -9.74294 -9.53292 -8.86171 -8.74381 -7.19658 -5.72854 -3.08729 0.20391 1.74707 1.76377 2.64784 2.75819 2.93919 3.47385 3.51982 3.56377 3.75170 3.91576 3.98210 4.39206 4.57922 4.64018 4.66049 4.71836 4.79771 4.80539 4.94174 4.96916 5.07604 5.16948 5.33861 5.43879 5.52324 5.56163 5.60100 5.68478 5.69090 5.74275 5.83580 5.90028 6.12900 6.15975 6.19776 6.29872 6.37128 6.62585 6.73544 6.79550 7.08150 7.73973 8.02171 8.45958 9.24793 9.97766 10.16449 11.45294 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.004207 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.352340 B = 6653.832790 C = 8776.196143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.127 4.127 5 C 0.088 3.912 6 N -0.594 5.594 7 C 0.589 3.411 8 O -0.485 6.485 9 C -0.038 4.038 10 O -0.175 6.175 11 C 0.195 3.805 12 N -0.469 5.469 13 C -0.019 4.019 14 C 0.360 3.640 15 F -0.179 7.179 16 F -0.182 7.182 17 C 0.119 3.881 18 C -0.108 4.108 19 H 0.075 0.925 20 C 0.166 3.834 21 N -0.757 5.757 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.008 3.992 25 N -0.934 5.934 26 Si 0.880 3.120 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.262 0.738 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.362 0.638 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -7.893 28.696 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.165 4.165 5 C -0.034 4.034 6 N -0.327 5.327 7 C 0.374 3.626 8 O -0.360 6.360 9 C -0.095 4.095 10 O -0.062 6.062 11 C -0.030 4.030 12 N -0.196 5.196 13 C -0.144 4.144 14 C 0.305 3.695 15 F -0.160 7.160 16 F -0.163 7.163 17 C -0.002 4.002 18 C -0.127 4.127 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.403 5.403 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.188 4.188 25 N -0.582 5.582 26 Si 0.710 3.290 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.278 0.722 38 H 0.148 0.852 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.195 0.805 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.553 -8.489 28.177 29.433 hybrid contribution 0.484 -0.381 -0.043 0.617 sum 1.037 -8.870 28.134 29.517 Atomic orbital electron populations 1.22005 0.94940 1.02020 1.02188 1.21083 0.96248 0.99586 0.93482 0.90352 1.22012 1.01116 0.94610 0.98761 1.22467 1.00987 0.94295 0.85668 1.48059 1.55576 1.20111 1.08937 1.16574 0.79383 0.81687 0.84992 1.91027 1.55640 1.60309 1.29034 1.23395 1.04043 0.97814 0.84252 1.84743 1.59130 1.46847 1.15465 1.28537 0.91242 0.84919 0.98339 1.70168 1.21624 1.25132 1.02693 1.22438 1.01437 0.97005 0.93472 1.19214 0.80523 0.89057 0.80707 1.93086 1.58825 1.86585 1.77543 1.93088 1.71506 1.77555 1.74140 1.21911 1.00807 0.92998 0.84454 1.21779 1.01020 0.94088 0.95832 0.90682 1.20655 0.96457 0.94961 0.84128 1.42785 1.57506 1.37451 1.02582 1.19023 1.24426 1.12334 0.81797 0.89206 1.24641 1.00096 0.98990 0.95097 1.69699 1.48310 1.43135 0.97035 0.86617 0.81392 0.83940 0.77029 1.20754 1.21698 1.20268 0.92511 0.92900 0.91450 0.91498 0.90472 0.90305 0.88110 0.72241 0.85170 0.88212 0.90197 0.94944 0.95140 0.80537 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.11 37.16 0.30 -1.24 16 2 C -0.08 -0.93 2.71 -90.58 -0.25 -1.17 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.12 5.64 -26.39 -0.15 -1.27 16 5 C 0.09 0.82 5.89 -3.48 -0.02 0.80 16 6 N -0.59 -7.88 2.97 -174.03 -0.52 -8.39 16 7 C 0.59 8.92 7.66 -12.83 -0.10 8.83 16 8 O -0.49 -9.21 13.41 5.21 0.07 -9.14 16 9 C -0.04 -0.47 6.89 -36.84 -0.25 -0.72 16 10 O -0.18 -1.46 7.26 4.46 0.03 -1.43 16 11 C 0.19 1.17 13.21 52.24 0.69 1.86 16 12 N -0.47 -4.48 11.26 -10.88 -0.12 -4.60 16 13 C -0.02 -0.23 6.59 -82.46 -0.54 -0.77 16 14 C 0.36 4.44 5.10 36.01 0.18 4.62 16 15 F -0.18 -2.65 16.00 2.25 0.04 -2.61 16 16 F -0.18 -2.75 16.43 2.25 0.04 -2.71 16 17 C 0.12 1.83 5.03 -3.71 -0.02 1.81 16 18 C -0.11 -1.60 2.15 -90.50 -0.19 -1.79 16 19 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 20 C 0.17 3.09 5.19 -4.04 -0.02 3.07 16 21 N -0.76 -18.28 5.18 -59.91 -0.31 -18.59 16 22 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 25 N -0.93 -29.97 13.97 55.49 0.78 -29.20 16 26 Si 0.88 23.44 27.74 -169.99 -4.71 18.72 16 27 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 28 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 29 H -0.28 -7.10 6.52 56.52 0.37 -6.73 16 30 H 0.06 0.57 4.97 -51.93 -0.26 0.31 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.76 6.58 -51.93 -0.34 0.42 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.65 6.68 -51.93 -0.35 0.30 16 36 H 0.10 0.82 3.77 -55.13 -0.21 0.61 16 37 H 0.26 0.00 8.06 -52.48 -0.42 -0.42 16 38 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.88 6.23 -51.93 -0.32 1.56 16 40 H 0.08 1.16 6.69 -51.93 -0.35 0.81 16 41 H 0.03 0.60 6.73 -51.93 -0.35 0.25 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.36 8.81 4.75 -40.82 -0.19 8.62 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -36.85 352.91 -5.36 -42.21 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.34 Total: 3.49 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.62 Total: 6.91 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.17 Total: -60.77 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.10 Total: -10.57 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.07 Total: -5.32 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.71 Total: 18.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.85 -5.36 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133113849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.380 kcal (2) G-P(sol) polarization free energy of solvation -36.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds