Wall clock time and date at job start Wed Apr 1 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46264 * 2 1 4 4 C 1.53038 * 109.45092 * 119.96706 * 2 1 3 5 5 C 1.53628 * 109.23974 * 58.52712 * 4 2 1 6 6 N 1.46928 * 108.54358 * 54.85743 * 5 4 2 7 7 C 1.34773 * 120.63400 * 126.37216 * 6 5 4 8 8 O 1.21678 * 120.00187 * 174.63618 * 7 6 5 9 9 C 1.46725 * 119.99496 * 354.90747 * 7 6 5 10 10 O 1.35338 * 126.65016 * 5.99390 * 9 7 6 11 11 C 1.33657 * 107.68869 * 179.84071 * 10 9 7 12 12 N 1.30614 * 109.15664 * 0.43591 * 11 10 9 13 13 C 1.33695 * 108.99233 * 359.72970 * 12 11 10 14 14 C 1.50699 * 126.27400 * 179.97438 * 13 12 11 15 15 F 1.39896 * 109.47623 * 120.02727 * 14 13 12 16 16 F 1.39901 * 109.46864 * 240.02504 * 14 13 12 17 17 C 1.46932 * 118.73522 * 306.09173 * 6 5 4 18 18 C 1.53046 * 109.45997 * 240.03246 * 2 1 3 19 19 H 1.08997 * 109.49442 * 181.40387 * 18 2 1 20 20 C 1.52999 * 109.52362 * 61.32231 * 18 2 1 21 21 N 1.46501 * 109.47028 * 175.14815 * 20 18 2 22 22 C 1.36938 * 120.00095 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99558 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00072 * 179.97438 * 22 21 20 25 25 N 1.31609 * 119.99945 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99870 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47302 * 89.99752 * 26 24 22 28 28 H 1.48500 * 109.46823 * 210.00027 * 26 24 22 29 29 H 1.48498 * 109.47154 * 329.99606 * 26 24 22 30 30 H 1.09004 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46811 * 299.96627 * 1 2 3 32 32 H 1.08996 * 109.47302 * 59.97132 * 1 2 3 33 33 H 1.08999 * 109.49708 * 178.59921 * 4 2 1 34 34 H 1.08993 * 109.49947 * 298.70054 * 4 2 1 35 35 H 1.08995 * 109.73788 * 295.11824 * 5 4 2 36 36 H 1.08998 * 109.66386 * 174.54703 * 5 4 2 37 37 H 1.08004 * 125.42276 * 180.14452 * 11 10 9 38 38 H 1.08998 * 109.47302 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.58154 * 173.65044 * 17 6 5 40 40 H 1.08998 * 109.58331 * 294.07704 * 17 6 5 41 41 H 1.08996 * 109.46942 * 295.14844 * 20 18 2 42 42 H 1.09001 * 109.46775 * 55.14839 * 20 18 2 43 43 H 0.97004 * 119.99750 * 359.97438 * 21 20 18 44 44 H 0.97001 * 119.99916 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4941 -2.1569 1.2642 6 7 1.8621 -2.8089 0.0000 7 6 2.5149 -3.9880 -0.0001 8 8 2.7278 -4.5655 -1.0496 9 6 2.9635 -4.5781 1.2662 10 8 2.6983 -4.1175 2.5109 11 6 3.2868 -4.9420 3.3829 12 7 3.9102 -5.8845 2.7280 13 6 3.7334 -5.6932 1.4166 14 6 4.2846 -6.5524 0.3080 15 9 3.2286 -7.0709 -0.4491 16 9 5.1118 -5.7793 -0.5137 17 6 1.4993 -2.1541 -1.2643 18 6 2.0398 -0.7208 -1.2501 19 1 3.1295 -0.7430 -1.2382 20 6 1.5577 0.0192 -2.4994 21 7 2.1407 -0.6028 -3.6908 22 6 1.8504 -0.1067 -4.9338 23 1 1.1920 0.7433 -5.0356 24 6 2.4033 -0.6957 -6.0626 25 7 2.1238 -0.2193 -7.2572 26 14 3.5427 -2.1654 -5.8863 27 1 2.7455 -3.4175 -5.9276 28 1 4.5248 -2.1668 -7.0001 29 1 4.2636 -2.0802 -4.5908 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 3.1293 -0.7430 1.2384 34 1 1.6955 -0.1935 2.1398 35 1 0.4088 -2.1375 1.3630 36 1 1.9293 -2.7064 2.0989 37 1 3.2559 -4.8419 4.4578 38 1 4.8615 -7.3721 0.7361 39 1 1.9379 -2.7018 -2.0984 40 1 0.4144 -2.1345 -1.3674 41 1 0.4706 -0.0345 -2.5566 42 1 1.8677 1.0628 -2.4457 43 1 2.7330 -1.3655 -3.5992 44 1 2.5105 -0.6307 -8.0460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133113849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:20 Heat of formation + Delta-G solvation = -106.504137 kcal Electronic energy + Delta-G solvation = -31677.450897 eV Core-core repulsion = 27074.379179 eV Total energy + Delta-G solvation = -4603.071719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.08239 -48.11869 -44.80811 -41.53850 -39.48255 -37.03749 -36.44019 -34.97856 -33.72252 -32.55530 -31.76489 -29.04030 -28.51831 -27.26444 -26.07276 -24.72079 -24.49244 -23.30643 -22.62403 -21.73111 -20.21596 -19.34981 -18.97674 -18.59879 -18.38519 -18.35393 -17.84124 -17.44017 -16.95618 -16.80855 -16.26659 -16.13986 -16.01133 -15.46976 -15.32646 -15.06081 -14.99981 -14.67305 -14.56942 -14.46391 -14.26667 -13.96457 -13.92322 -13.44081 -13.14272 -13.02761 -12.85311 -12.72606 -12.58382 -12.43982 -12.27340 -12.18718 -11.94409 -11.89446 -11.77115 -11.59697 -11.36238 -11.19776 -11.00792 -10.55723 -9.77946 -9.32711 -8.08397 -5.39781 -0.61270 0.97978 1.11901 1.30865 1.35651 1.38675 1.63684 1.78698 2.22285 2.40919 3.04891 3.08621 3.15021 3.24222 3.47635 3.69997 3.74952 3.79854 3.82964 3.91529 3.95860 4.00310 4.13859 4.22209 4.31010 4.46027 4.49706 4.62714 4.69280 4.71142 4.85641 4.91438 5.03597 5.08461 5.14597 5.19424 5.24141 5.34172 5.38355 5.57702 5.72327 5.98403 6.16925 6.20775 6.68604 7.02847 7.80379 7.96311 9.13252 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.004207 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.352340 B = 6653.832790 C = 8776.196143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.119 4.119 5 C 0.082 3.918 6 N -0.591 5.591 7 C 0.581 3.419 8 O -0.541 6.541 9 C -0.064 4.064 10 O -0.167 6.167 11 C 0.237 3.763 12 N -0.495 5.495 13 C -0.019 4.019 14 C 0.345 3.655 15 F -0.199 7.199 16 F -0.203 7.203 17 C 0.124 3.876 18 C -0.096 4.096 19 H 0.059 0.941 20 C 0.162 3.838 21 N -0.763 5.763 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.053 4.053 25 N -0.978 5.978 26 Si 0.940 3.060 27 H -0.285 1.285 28 H -0.289 1.289 29 H -0.266 1.266 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.324 0.676 38 H 0.171 0.829 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.033 0.967 43 H 0.360 0.640 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -7.978 33.779 34.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.157 4.157 5 C -0.037 4.037 6 N -0.322 5.322 7 C 0.368 3.632 8 O -0.420 6.420 9 C -0.121 4.121 10 O -0.054 6.054 11 C 0.013 3.987 12 N -0.221 5.221 13 C -0.143 4.143 14 C 0.291 3.709 15 F -0.180 7.180 16 F -0.184 7.184 17 C 0.002 3.998 18 C -0.115 4.115 19 H 0.077 0.923 20 C 0.036 3.964 21 N -0.408 5.408 22 C -0.360 4.360 23 H 0.085 0.915 24 C -0.245 4.245 25 N -0.629 5.629 26 Si 0.769 3.231 27 H -0.212 1.212 28 H -0.215 1.215 29 H -0.192 1.192 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.338 0.662 38 H 0.188 0.812 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.193 0.807 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.527 -8.551 33.348 34.431 hybrid contribution 0.420 -0.300 -1.429 1.520 sum 0.947 -8.851 31.919 33.137 Atomic orbital electron populations 1.21983 0.93920 1.02161 1.02800 1.21086 0.97006 0.99594 0.92223 0.89644 1.22000 1.00699 0.94117 0.98838 1.22814 1.02294 0.94496 0.84134 1.48125 1.54861 1.19697 1.09500 1.16954 0.78897 0.81752 0.85607 1.90985 1.57796 1.61860 1.31312 1.22676 1.06116 0.98714 0.84629 1.84693 1.59366 1.47094 1.14230 1.29998 0.86935 0.82032 0.99769 1.70226 1.23548 1.26921 1.01401 1.22430 1.00916 0.96571 0.94411 1.19831 0.80356 0.90233 0.80432 1.93036 1.59859 1.86844 1.78229 1.93033 1.72089 1.78320 1.74992 1.21638 1.00721 0.92803 0.84667 1.21644 0.99974 0.93857 0.96069 0.92255 1.20870 0.96497 0.95141 0.83889 1.42895 1.57667 1.37536 1.02751 1.19078 1.22458 1.10802 0.83662 0.91545 1.25282 1.02347 1.01881 0.94954 1.69832 1.50296 1.45011 0.97791 0.85647 0.79627 0.80581 0.77284 1.21176 1.21534 1.19152 0.92580 0.89968 0.93205 0.92178 0.86646 0.88528 0.86343 0.66168 0.81221 0.92438 0.89589 0.94342 0.94947 0.80694 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.11 71.98 0.58 -1.99 16 2 C -0.08 -1.53 2.71 -10.77 -0.03 -1.56 16 3 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.12 -1.63 5.64 30.82 0.17 -1.45 16 5 C 0.08 1.26 5.89 86.51 0.51 1.77 16 6 N -0.59 -15.22 2.97 -822.72 -2.44 -17.66 16 7 C 0.58 17.78 7.66 86.46 0.66 18.45 16 8 O -0.54 -21.64 13.41 -4.28 -0.06 -21.70 16 9 C -0.06 -1.48 6.89 24.05 0.17 -1.31 16 10 O -0.17 -2.12 7.26 -6.96 -0.05 -2.17 16 11 C 0.24 1.63 13.21 130.42 1.72 3.36 16 12 N -0.49 -7.79 11.26 -303.13 -3.41 -11.21 16 13 C -0.02 -0.44 6.59 41.83 0.28 -0.16 16 14 C 0.35 8.52 5.10 71.24 0.36 8.89 16 15 F -0.20 -6.07 16.00 44.97 0.72 -5.36 16 16 F -0.20 -6.35 16.43 44.97 0.74 -5.61 16 17 C 0.12 3.85 5.03 86.36 0.43 4.28 16 18 C -0.10 -2.80 2.15 -10.72 -0.02 -2.82 16 19 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 20 C 0.16 6.08 5.19 86.38 0.45 6.53 16 21 N -0.76 -37.60 5.18 -343.45 -1.78 -39.38 16 22 C -0.23 -13.55 10.47 84.03 0.88 -12.66 16 23 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 24 C -0.05 -3.25 5.50 84.86 0.47 -2.79 16 25 N -0.98 -64.69 13.97 21.65 0.30 -64.39 16 26 Si 0.94 50.10 27.74 68.60 1.90 52.00 16 27 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 28 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 29 H -0.27 -13.54 6.52 99.48 0.65 -12.89 16 30 H 0.06 0.96 4.97 -2.38 -0.01 0.95 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.03 6.58 -2.39 -0.02 1.01 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.19 6.68 -2.39 -0.02 1.17 16 36 H 0.12 1.43 3.77 -53.05 -0.20 1.23 16 37 H 0.32 -2.44 8.06 -2.91 -0.02 -2.47 16 38 H 0.17 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.06 2.29 6.23 -2.39 -0.01 2.28 16 40 H 0.09 2.51 6.69 -2.39 -0.02 2.49 16 41 H 0.04 1.42 6.73 -2.39 -0.02 1.41 16 42 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.36 17.97 4.75 -92.71 -0.44 17.53 16 44 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -86.59 352.91 2.94 -83.66 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.38 Total: 13.28 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 6.64 Total: 18.52 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -7.33 Total: -132.63 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.11 Total: -23.87 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 1.46 Total: -10.96 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 1.90 Total: 52.00 kcal Total: -86.59 2.94 -83.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133113849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.847 kcal (2) G-P(sol) polarization free energy of solvation -86.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds