Wall clock time and date at job start Wed Apr 1 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.45724 * 2 1 4 4 C 1.53039 * 109.45852 * 240.02743 * 2 1 3 5 5 C 1.53194 * 109.31087 * 301.35989 * 4 2 1 6 6 N 1.46924 * 108.77832 * 305.36210 * 5 4 2 7 7 C 1.34772 * 120.63362 * 233.59061 * 6 5 4 8 8 O 1.21688 * 119.99758 * 172.88346 * 7 6 5 9 9 C 1.46721 * 120.00153 * 352.88160 * 7 6 5 10 10 O 1.35344 * 126.63896 * 352.55889 * 9 7 6 11 11 C 1.33668 * 107.68033 * 180.02562 * 10 9 7 12 12 N 1.30612 * 109.15345 * 0.02562 * 11 10 9 13 13 C 1.33688 * 109.00055 * 359.73049 * 12 11 10 14 14 C 1.50700 * 126.27773 * 180.27132 * 13 12 11 15 15 F 1.39906 * 109.47079 * 120.18952 * 14 13 12 16 16 F 1.39899 * 109.46984 * 240.18718 * 14 13 12 17 17 C 1.46930 * 118.73237 * 53.61227 * 6 5 4 18 18 C 1.53043 * 109.44340 * 119.96617 * 2 1 3 19 19 H 1.09001 * 109.48895 * 178.59736 * 18 2 1 20 20 C 1.52998 * 109.49863 * 298.69227 * 18 2 1 21 21 N 1.46500 * 109.46780 * 184.84166 * 20 18 2 22 22 C 1.36943 * 119.99853 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99815 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99784 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99946 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00395 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47105 * 89.99810 * 26 24 22 28 28 H 1.48497 * 109.47416 * 209.99938 * 26 24 22 29 29 H 1.48499 * 109.46780 * 330.00249 * 26 24 22 30 30 H 1.08999 * 109.47668 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47050 * 299.97121 * 1 2 3 32 32 H 1.09000 * 109.47016 * 59.96859 * 1 2 3 33 33 H 1.08998 * 109.49877 * 181.40772 * 4 2 1 34 34 H 1.09001 * 109.49649 * 61.31163 * 4 2 1 35 35 H 1.09003 * 109.58239 * 185.57771 * 5 4 2 36 36 H 1.08994 * 109.70275 * 65.22557 * 5 4 2 37 37 H 1.08004 * 125.42371 * 180.02562 * 11 10 9 38 38 H 1.08993 * 109.47504 * 0.18979 * 14 13 12 39 39 H 1.09004 * 109.59010 * 66.18108 * 17 6 5 40 40 H 1.09006 * 109.58250 * 186.60175 * 17 6 5 41 41 H 1.08993 * 109.47548 * 304.84244 * 20 18 2 42 42 H 1.08998 * 109.46725 * 64.84684 * 20 18 2 43 43 H 0.96998 * 120.00446 * 0.02562 * 21 20 18 44 44 H 0.96998 * 120.00063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.4992 -2.1542 -1.2641 6 7 1.8619 -2.8090 0.0001 7 6 2.5147 -3.9880 0.0002 8 8 2.9237 -4.4569 1.0460 9 6 2.7323 -4.7063 -1.2605 10 8 2.2198 -4.3858 -2.4715 11 6 2.6596 -5.2912 -3.3510 12 7 3.4199 -6.1549 -2.7329 13 6 3.4933 -5.8232 -1.4399 14 6 4.2719 -6.5521 -0.3752 15 9 5.2160 -5.6862 0.1872 16 9 3.3959 -6.9973 0.6206 17 6 1.4989 -2.1541 1.2643 18 6 2.0395 -0.7208 1.2502 19 1 3.1292 -0.7431 1.2385 20 6 1.5565 0.0195 2.4990 21 7 2.1387 -0.6022 3.6910 22 6 1.8467 -0.1065 4.9337 23 1 1.1876 0.7430 5.0350 24 6 2.3979 -0.6960 6.0631 25 7 2.1177 -0.2193 7.2575 26 14 3.5373 -2.1658 5.8879 27 1 4.9387 -1.6927 5.7551 28 1 3.4185 -3.0303 7.0895 29 1 3.1606 -2.9428 4.6798 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 3.1295 -0.7432 -1.2381 34 1 1.6959 -0.1935 -2.1398 35 1 1.9378 -2.7019 -2.0983 36 1 0.4144 -2.1367 -1.3686 37 1 2.4238 -5.3063 -4.4049 38 1 4.7820 -7.4069 -0.8191 39 1 0.4139 -2.1344 1.3673 40 1 1.9373 -2.7018 2.0986 41 1 1.8665 1.0631 2.4454 42 1 0.4693 -0.0342 2.5555 43 1 2.7309 -1.3650 3.6000 44 1 2.5025 -0.6314 8.0467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133113850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:24 Heat of formation + Delta-G solvation = -80.900513 kcal Electronic energy + Delta-G solvation = -31652.922361 eV Core-core repulsion = 27050.960899 eV Total energy + Delta-G solvation = -4601.961462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.05894 -47.06490 -44.10686 -40.49082 -38.34779 -35.98527 -35.08493 -33.71127 -32.07433 -31.55375 -30.28423 -28.14485 -27.40852 -25.91204 -25.12279 -23.80606 -23.03429 -22.37925 -21.19261 -20.71051 -18.95800 -18.13858 -17.78452 -17.62570 -17.43679 -17.24822 -16.96298 -16.36719 -16.02160 -15.34835 -15.25085 -15.06075 -14.52654 -14.32306 -13.97144 -13.91810 -13.76261 -13.51641 -13.38855 -13.15499 -12.95375 -12.71193 -12.58764 -12.28184 -12.03842 -11.85916 -11.60468 -11.57214 -11.37360 -11.26742 -11.06368 -10.85779 -10.72819 -10.49911 -10.33985 -10.18051 -9.97021 -9.74778 -9.52471 -8.86298 -8.73369 -7.18924 -5.72265 -3.08188 0.20095 1.73612 1.78660 2.64023 2.76544 2.93657 3.47564 3.54379 3.57367 3.74790 3.91605 3.98269 4.41315 4.57267 4.65868 4.66952 4.72310 4.79268 4.80715 4.94146 4.97944 5.08094 5.17652 5.34539 5.44250 5.51696 5.55161 5.60982 5.62805 5.69633 5.73988 5.82997 5.90914 6.13745 6.17007 6.20447 6.30401 6.37380 6.63449 6.74278 6.79349 7.08578 7.74374 8.02797 8.46545 9.25533 9.98474 10.17194 11.45832 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.004161 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.801280 B = 6727.188747 C = 8845.341791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.127 4.127 5 C 0.094 3.906 6 N -0.595 5.595 7 C 0.590 3.410 8 O -0.484 6.484 9 C -0.038 4.038 10 O -0.176 6.176 11 C 0.197 3.803 12 N -0.469 5.469 13 C -0.020 4.020 14 C 0.360 3.640 15 F -0.183 7.183 16 F -0.179 7.179 17 C 0.118 3.882 18 C -0.107 4.107 19 H 0.076 0.924 20 C 0.166 3.834 21 N -0.757 5.757 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.934 5.934 26 Si 0.878 3.122 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.271 1.271 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.362 0.638 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 -8.526 -28.683 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.166 4.166 5 C -0.028 4.028 6 N -0.328 5.328 7 C 0.374 3.626 8 O -0.359 6.359 9 C -0.095 4.095 10 O -0.063 6.063 11 C -0.029 4.029 12 N -0.197 5.197 13 C -0.144 4.144 14 C 0.305 3.695 15 F -0.164 7.164 16 F -0.160 7.160 17 C -0.003 4.003 18 C -0.127 4.127 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.403 5.403 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.188 4.188 25 N -0.582 5.582 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.197 1.197 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.278 0.722 38 H 0.148 0.852 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.195 0.805 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.461 -9.091 -28.176 29.610 hybrid contribution 0.452 -0.413 0.062 0.615 sum -0.010 -9.504 -28.114 29.677 Atomic orbital electron populations 1.22005 0.94958 1.01998 1.02183 1.21080 0.96228 0.99597 0.93477 0.90333 1.21945 1.01200 0.94586 0.98827 1.22197 1.01057 0.94102 0.85437 1.48046 1.55947 1.19868 1.08905 1.16555 0.79737 0.81399 0.84930 1.91037 1.48809 1.66841 1.29164 1.23366 1.01415 0.99319 0.85409 1.84761 1.58000 1.46506 1.17008 1.28491 0.92732 0.83770 0.97885 1.70159 1.18619 1.26997 1.03882 1.22437 1.01939 0.96342 0.93683 1.19213 0.80250 0.89371 0.80660 1.93082 1.64364 1.72582 1.86339 1.93094 1.70504 1.89153 1.63216 1.21927 1.00596 0.93188 0.84547 1.21770 1.01075 0.94074 0.95774 0.90609 1.20654 0.96413 0.94985 0.84160 1.42787 1.57739 1.37248 1.02560 1.19023 1.24521 1.12176 0.81845 0.89227 1.24644 1.00121 0.98986 0.95090 1.69703 1.48344 1.43140 0.97032 0.86636 0.81510 0.83681 0.77358 1.21089 1.21657 1.19707 0.92532 0.91454 0.92907 0.91471 0.90411 0.88826 0.90436 0.72186 0.85166 0.90262 0.88064 0.95107 0.95031 0.80486 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.11 37.16 0.30 -1.24 16 2 C -0.08 -0.93 2.71 -90.58 -0.25 -1.17 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.14 5.63 -26.61 -0.15 -1.29 16 5 C 0.09 0.88 5.65 -3.71 -0.02 0.86 16 6 N -0.60 -7.91 2.97 -174.29 -0.52 -8.43 16 7 C 0.59 8.95 7.65 -12.84 -0.10 8.85 16 8 O -0.48 -9.26 13.42 5.20 0.07 -9.19 16 9 C -0.04 -0.46 6.79 -36.84 -0.25 -0.71 16 10 O -0.18 -1.48 7.45 4.41 0.03 -1.45 16 11 C 0.20 1.18 13.21 52.24 0.69 1.87 16 12 N -0.47 -4.46 11.26 -10.88 -0.12 -4.58 16 13 C -0.02 -0.24 6.59 -82.47 -0.54 -0.78 16 14 C 0.36 4.42 5.11 36.01 0.18 4.61 16 15 F -0.18 -2.71 16.47 2.25 0.04 -2.67 16 16 F -0.18 -2.67 15.97 2.25 0.04 -2.63 16 17 C 0.12 1.82 5.06 -3.71 -0.02 1.80 16 18 C -0.11 -1.60 2.15 -90.50 -0.19 -1.79 16 19 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.17 3.09 5.19 -4.04 -0.02 3.07 16 21 N -0.76 -18.29 5.18 -59.91 -0.31 -18.60 16 22 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 23 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 25 N -0.93 -30.02 13.97 55.49 0.78 -29.24 16 26 Si 0.88 23.40 27.73 -169.99 -4.71 18.68 16 27 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 28 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 29 H -0.27 -7.04 6.52 56.52 0.37 -6.67 16 30 H 0.06 0.56 4.98 -51.93 -0.26 0.31 16 31 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.77 4.25 -52.75 -0.22 0.55 16 36 H 0.08 0.64 6.70 -51.93 -0.35 0.29 16 37 H 0.26 -0.01 8.06 -52.48 -0.42 -0.43 16 38 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.15 6.69 -51.93 -0.35 0.80 16 40 H 0.10 1.94 6.20 -51.93 -0.32 1.62 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.59 6.72 -51.93 -0.35 0.24 16 43 H 0.36 8.83 4.75 -40.82 -0.19 8.64 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -36.92 353.27 -5.37 -42.29 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.36 Total: 3.52 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.62 Total: 6.96 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.18 Total: -60.85 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.10 Total: -10.63 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.07 Total: -5.30 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.71 Total: 18.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.92 -5.37 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133113850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.607 kcal (2) G-P(sol) polarization free energy of solvation -36.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds