Wall clock time and date at job start Wed Apr 1 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.45724 * 2 1 4 4 C 1.53039 * 109.45852 * 240.02743 * 2 1 3 5 5 C 1.53194 * 109.31087 * 301.35989 * 4 2 1 6 6 N 1.46924 * 108.77832 * 305.36210 * 5 4 2 7 7 C 1.34772 * 120.63362 * 233.59061 * 6 5 4 8 8 O 1.21688 * 119.99758 * 172.88346 * 7 6 5 9 9 C 1.46721 * 120.00153 * 352.88160 * 7 6 5 10 10 O 1.35344 * 126.63896 * 352.55889 * 9 7 6 11 11 C 1.33668 * 107.68033 * 180.02562 * 10 9 7 12 12 N 1.30612 * 109.15345 * 0.02562 * 11 10 9 13 13 C 1.33688 * 109.00055 * 359.73049 * 12 11 10 14 14 C 1.50700 * 126.27773 * 180.27132 * 13 12 11 15 15 F 1.39906 * 109.47079 * 120.18952 * 14 13 12 16 16 F 1.39899 * 109.46984 * 240.18718 * 14 13 12 17 17 C 1.46930 * 118.73237 * 53.61227 * 6 5 4 18 18 C 1.53043 * 109.44340 * 119.96617 * 2 1 3 19 19 H 1.09001 * 109.48895 * 178.59736 * 18 2 1 20 20 C 1.52998 * 109.49863 * 298.69227 * 18 2 1 21 21 N 1.46500 * 109.46780 * 184.84166 * 20 18 2 22 22 C 1.36943 * 119.99853 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99815 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99784 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99946 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00395 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47105 * 89.99810 * 26 24 22 28 28 H 1.48497 * 109.47416 * 209.99938 * 26 24 22 29 29 H 1.48499 * 109.46780 * 330.00249 * 26 24 22 30 30 H 1.08999 * 109.47668 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47050 * 299.97121 * 1 2 3 32 32 H 1.09000 * 109.47016 * 59.96859 * 1 2 3 33 33 H 1.08998 * 109.49877 * 181.40772 * 4 2 1 34 34 H 1.09001 * 109.49649 * 61.31163 * 4 2 1 35 35 H 1.09003 * 109.58239 * 185.57771 * 5 4 2 36 36 H 1.08994 * 109.70275 * 65.22557 * 5 4 2 37 37 H 1.08004 * 125.42371 * 180.02562 * 11 10 9 38 38 H 1.08993 * 109.47504 * 0.18979 * 14 13 12 39 39 H 1.09004 * 109.59010 * 66.18108 * 17 6 5 40 40 H 1.09006 * 109.58250 * 186.60175 * 17 6 5 41 41 H 1.08993 * 109.47548 * 304.84244 * 20 18 2 42 42 H 1.08998 * 109.46725 * 64.84684 * 20 18 2 43 43 H 0.96998 * 120.00446 * 0.02562 * 21 20 18 44 44 H 0.96998 * 120.00063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.4992 -2.1542 -1.2641 6 7 1.8619 -2.8090 0.0001 7 6 2.5147 -3.9880 0.0002 8 8 2.9237 -4.4569 1.0460 9 6 2.7323 -4.7063 -1.2605 10 8 2.2198 -4.3858 -2.4715 11 6 2.6596 -5.2912 -3.3510 12 7 3.4199 -6.1549 -2.7329 13 6 3.4933 -5.8232 -1.4399 14 6 4.2719 -6.5521 -0.3752 15 9 5.2160 -5.6862 0.1872 16 9 3.3959 -6.9973 0.6206 17 6 1.4989 -2.1541 1.2643 18 6 2.0395 -0.7208 1.2502 19 1 3.1292 -0.7431 1.2385 20 6 1.5565 0.0195 2.4990 21 7 2.1387 -0.6022 3.6910 22 6 1.8467 -0.1065 4.9337 23 1 1.1876 0.7430 5.0350 24 6 2.3979 -0.6960 6.0631 25 7 2.1177 -0.2193 7.2575 26 14 3.5373 -2.1658 5.8879 27 1 4.9387 -1.6927 5.7551 28 1 3.4185 -3.0303 7.0895 29 1 3.1606 -2.9428 4.6798 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 3.1295 -0.7432 -1.2381 34 1 1.6959 -0.1935 -2.1398 35 1 1.9378 -2.7019 -2.0983 36 1 0.4144 -2.1367 -1.3686 37 1 2.4238 -5.3063 -4.4049 38 1 4.7820 -7.4069 -0.8191 39 1 0.4139 -2.1344 1.3673 40 1 1.9373 -2.7018 2.0986 41 1 1.8665 1.0631 2.4454 42 1 0.4693 -0.0342 2.5555 43 1 2.7309 -1.3650 3.6000 44 1 2.5025 -0.6314 8.0467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133113850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:23 Heat of formation + Delta-G solvation = -109.793579 kcal Electronic energy + Delta-G solvation = -31654.175259 eV Core-core repulsion = 27050.960899 eV Total energy + Delta-G solvation = -4603.214360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.08299 -48.11984 -44.80190 -41.54625 -39.47850 -37.01526 -36.43843 -34.98551 -33.72491 -32.55108 -31.78098 -29.05237 -28.51717 -27.25723 -26.05715 -24.70357 -24.50517 -23.27526 -22.62429 -21.70058 -20.21718 -19.36754 -18.94006 -18.63816 -18.38751 -18.34250 -17.86819 -17.42524 -16.90311 -16.78112 -16.32124 -16.10543 -16.01245 -15.38803 -15.32337 -15.07179 -14.99954 -14.64789 -14.63412 -14.46679 -14.29366 -13.96293 -13.93735 -13.43993 -13.17184 -13.01629 -12.80364 -12.73163 -12.55292 -12.44181 -12.29621 -12.20611 -11.96893 -11.89319 -11.76198 -11.59815 -11.36006 -11.20285 -11.01513 -10.55988 -9.77803 -9.32232 -8.08102 -5.39495 -0.61501 0.99637 1.11338 1.31387 1.35383 1.41594 1.63052 1.78956 2.22493 2.41524 3.04788 3.08788 3.16158 3.24382 3.48125 3.70122 3.74454 3.80572 3.82953 3.93033 3.96436 4.00997 4.14500 4.21662 4.30227 4.45560 4.49541 4.63514 4.69615 4.71589 4.85677 4.90992 5.03142 5.05982 5.11474 5.19591 5.24437 5.32365 5.38040 5.57561 5.72552 5.98624 6.17217 6.20383 6.68688 7.03254 7.80900 7.96832 9.13498 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.004161 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.801280 B = 6727.188747 C = 8845.341791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.120 4.120 5 C 0.089 3.911 6 N -0.591 5.591 7 C 0.582 3.418 8 O -0.541 6.541 9 C -0.064 4.064 10 O -0.168 6.168 11 C 0.238 3.762 12 N -0.495 5.495 13 C -0.019 4.019 14 C 0.346 3.654 15 F -0.202 7.202 16 F -0.199 7.199 17 C 0.124 3.876 18 C -0.096 4.096 19 H 0.059 0.941 20 C 0.162 3.838 21 N -0.763 5.763 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.053 4.053 25 N -0.979 5.979 26 Si 0.939 3.061 27 H -0.279 1.279 28 H -0.292 1.292 29 H -0.268 1.268 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.325 0.675 38 H 0.171 0.829 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.361 0.639 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -8.852 -33.727 34.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.031 4.031 6 N -0.323 5.323 7 C 0.368 3.632 8 O -0.419 6.419 9 C -0.122 4.122 10 O -0.055 6.055 11 C 0.014 3.986 12 N -0.221 5.221 13 C -0.143 4.143 14 C 0.292 3.708 15 F -0.184 7.184 16 F -0.180 7.180 17 C 0.002 3.998 18 C -0.116 4.116 19 H 0.077 0.923 20 C 0.036 3.964 21 N -0.409 5.409 22 C -0.360 4.360 23 H 0.084 0.916 24 C -0.245 4.245 25 N -0.630 5.630 26 Si 0.768 3.232 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.193 1.193 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.339 0.661 38 H 0.188 0.812 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.193 0.807 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.974 -9.396 -33.307 34.621 hybrid contribution 0.524 -0.264 1.436 1.551 sum -0.450 -9.660 -31.872 33.306 Atomic orbital electron populations 1.21982 0.93841 1.02199 1.02808 1.21080 0.97061 0.99570 0.92164 0.89661 1.21940 1.00690 0.94200 0.98954 1.22541 1.02469 0.94204 0.83876 1.48114 1.55199 1.19475 1.09467 1.16935 0.79070 0.81621 0.85529 1.90996 1.51174 1.68264 1.31493 1.22634 1.03703 1.00003 0.85815 1.84728 1.57841 1.47033 1.15884 1.29961 0.88764 0.80798 0.99054 1.70217 1.20676 1.28564 1.02660 1.22428 1.01319 0.95993 0.94588 1.19833 0.80174 0.90503 0.80339 1.93030 1.65098 1.73452 1.86787 1.93041 1.71283 1.89369 1.64350 1.21646 1.00571 0.92930 0.84700 1.21642 0.99988 0.93898 0.96057 0.92284 1.20870 0.96479 0.95153 0.83893 1.42901 1.57916 1.37315 1.02734 1.19080 1.22525 1.10667 0.83697 0.91551 1.25285 1.02369 1.01881 0.94947 1.69837 1.50361 1.44990 0.97780 0.85654 0.79797 0.80676 0.77103 1.20567 1.21837 1.19321 0.92517 0.93194 0.89958 0.92334 0.86573 0.87088 0.88457 0.66118 0.81202 0.89474 0.92469 0.94916 0.94375 0.80653 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.11 71.98 0.58 -1.97 16 2 C -0.08 -1.54 2.71 -10.77 -0.03 -1.57 16 3 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.12 -1.69 5.63 30.67 0.17 -1.51 16 5 C 0.09 1.37 5.65 86.36 0.49 1.86 16 6 N -0.59 -15.28 2.97 -823.56 -2.45 -17.73 16 7 C 0.58 17.86 7.65 86.46 0.66 18.53 16 8 O -0.54 -21.83 13.42 -4.31 -0.06 -21.89 16 9 C -0.06 -1.48 6.79 24.05 0.16 -1.32 16 10 O -0.17 -2.15 7.45 -7.12 -0.05 -2.20 16 11 C 0.24 1.64 13.21 130.42 1.72 3.36 16 12 N -0.49 -7.75 11.26 -303.13 -3.41 -11.17 16 13 C -0.02 -0.43 6.59 41.83 0.28 -0.16 16 14 C 0.35 8.50 5.11 71.24 0.36 8.86 16 15 F -0.20 -6.21 16.47 44.97 0.74 -5.47 16 16 F -0.20 -6.19 15.97 44.97 0.72 -5.47 16 17 C 0.12 3.86 5.06 86.36 0.44 4.29 16 18 C -0.10 -2.84 2.15 -10.72 -0.02 -2.86 16 19 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 20 C 0.16 6.10 5.19 86.38 0.45 6.55 16 21 N -0.76 -37.71 5.18 -343.46 -1.78 -39.49 16 22 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16 23 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 24 C -0.05 -3.27 5.50 84.86 0.47 -2.80 16 25 N -0.98 -64.79 13.97 21.65 0.30 -64.49 16 26 Si 0.94 50.13 27.73 68.60 1.90 52.04 16 27 H -0.28 -14.57 7.11 99.48 0.71 -13.87 16 28 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 29 H -0.27 -13.99 6.52 99.48 0.65 -13.34 16 30 H 0.06 0.96 4.98 -2.39 -0.01 0.95 16 31 H 0.05 1.02 6.57 -2.39 -0.02 1.01 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 1.36 4.25 -15.38 -0.07 1.30 16 36 H 0.10 1.17 6.70 -2.39 -0.02 1.15 16 37 H 0.32 -2.46 8.06 -2.91 -0.02 -2.49 16 38 H 0.17 2.62 8.14 -2.39 -0.02 2.61 16 39 H 0.09 2.53 6.69 -2.38 -0.02 2.51 16 40 H 0.06 2.31 6.20 -2.38 -0.01 2.30 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.04 1.41 6.72 -2.39 -0.02 1.40 16 43 H 0.36 18.06 4.75 -92.71 -0.44 17.62 16 44 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -86.87 353.27 3.04 -83.83 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.51 Total: 13.44 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.61 Total: 18.60 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -7.34 Total: -132.87 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.11 Total: -24.10 kcal Atomic # 9 Polarization: -12.40 SS G_CDS: 1.46 Total: -10.94 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.90 Total: 52.04 kcal Total: -86.87 3.04 -83.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133113850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.965 kcal (2) G-P(sol) polarization free energy of solvation -86.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds