Wall clock time and date at job start Wed Apr 1 2020 01:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30017 * 127.33370 * 2 1 4 4 O 1.20652 * 112.29726 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.16118 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.82878 * 179.97438 * 5 4 3 7 7 F 1.39899 * 109.47452 * 120.02478 * 6 5 4 8 8 F 1.39903 * 109.46805 * 240.02523 * 6 5 4 9 9 C 1.37354 * 106.33947 * 0.23960 * 5 4 3 10 10 C 1.47406 * 128.56435 * 179.75837 * 9 5 4 11 11 O 1.21606 * 119.99844 * 90.00033 * 10 9 5 12 12 N 1.34773 * 119.99846 * 270.00530 * 10 9 5 13 13 C 1.46503 * 119.99810 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47006 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46911 * 175.02366 * 14 13 12 16 16 C 1.53004 * 115.54945 * 278.02926 * 15 14 13 17 17 N 1.46499 * 109.47182 * 303.90012 * 16 15 14 18 18 C 1.36932 * 120.00041 * 175.59049 * 17 16 15 19 19 H 1.08002 * 120.00283 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99827 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00377 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99882 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47101 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47017 * 120.00035 * 22 20 18 25 25 H 1.48502 * 109.46691 * 240.00038 * 22 20 18 26 26 C 1.52999 * 117.50306 * 132.32212 * 15 14 13 27 27 C 1.53001 * 60.00288 * 252.50864 * 26 15 14 28 28 H 1.08996 * 109.47180 * 90.02460 * 1 2 3 29 29 H 1.09001 * 109.46477 * 210.02338 * 1 2 3 30 30 H 1.08998 * 109.46996 * 330.01700 * 1 2 3 31 31 H 1.09004 * 109.47082 * 0.02562 * 6 5 4 32 32 H 0.96993 * 120.00210 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.46529 * 299.99516 * 13 12 10 34 34 H 1.08997 * 109.47465 * 59.99559 * 13 12 10 35 35 H 1.09000 * 109.47094 * 295.01784 * 14 13 12 36 36 H 1.08997 * 109.47513 * 55.02032 * 14 13 12 37 37 H 1.09001 * 109.46917 * 63.90413 * 16 15 14 38 38 H 1.08999 * 109.47052 * 183.90147 * 16 15 14 39 39 H 0.96999 * 119.99441 * 355.59306 * 17 16 15 40 40 H 0.96993 * 120.00350 * 180.02562 * 21 20 18 41 41 H 1.09002 * 117.49412 * 359.97438 * 26 15 14 42 42 H 1.08998 * 117.50234 * 145.01814 * 26 15 14 43 43 H 1.08996 * 117.49759 * 252.50996 * 27 26 15 44 44 H 1.08999 * 117.49889 * 107.48228 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6007 0.0004 6 6 4.9712 -1.3245 0.0003 7 9 5.0633 -2.1275 1.1422 8 9 5.0637 -2.1264 -1.1424 9 6 2.3992 -1.1696 -0.0058 10 6 2.0401 -2.5992 -0.0134 11 8 1.8890 -3.1937 1.0366 12 7 1.8794 -3.2474 -1.1840 13 6 1.5220 -4.6681 -1.1916 14 6 1.4015 -5.1560 -2.6367 15 6 1.1508 -6.6653 -2.6461 16 6 2.3956 -7.5419 -2.4943 17 7 3.3613 -7.2047 -3.5431 18 6 4.5947 -7.7992 -3.5550 19 1 4.8556 -8.5170 -2.7913 20 6 5.5099 -7.4792 -4.5484 21 7 5.1922 -6.6040 -5.4788 22 14 7.1924 -8.2908 -4.5650 23 1 7.3006 -9.2291 -3.4192 24 1 7.3689 -9.0382 -5.8359 25 1 8.2452 -7.2495 -4.4527 26 6 0.0222 -7.1885 -3.5368 27 6 -0.1494 -7.1695 -2.0166 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5136 31 1 5.7835 -0.5976 0.0009 32 1 1.9996 -2.7731 -2.0215 33 1 2.2949 -5.2399 -0.6779 34 1 0.5687 -4.8057 -0.6813 35 1 0.5701 -4.6466 -3.1240 36 1 2.3254 -4.9378 -3.1721 37 1 2.8453 -7.3681 -1.5168 38 1 2.1141 -8.5912 -2.5834 39 1 3.1268 -6.5602 -4.2291 40 1 5.8316 -6.3807 -6.1732 41 1 -0.5421 -6.4573 -4.1157 42 1 0.1663 -8.1573 -4.0150 43 1 -0.1180 -8.1258 -1.4946 44 1 -0.8261 -6.4259 -1.5957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165682454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:13 Heat of formation + Delta-G solvation = -39.089108 kcal Electronic energy + Delta-G solvation = -30409.946456 eV Core-core repulsion = 25809.798072 eV Total energy + Delta-G solvation = -4600.148384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.39567 -47.40082 -45.40968 -39.77026 -38.28816 -35.07826 -34.93434 -33.93727 -33.35721 -30.80032 -30.14027 -29.23233 -27.37460 -26.01758 -25.00180 -23.16366 -22.71237 -21.86801 -21.36429 -20.69593 -19.01635 -18.47669 -18.28230 -17.72695 -17.40332 -17.28762 -17.07590 -16.22354 -15.85501 -15.42087 -15.02559 -14.43766 -14.23857 -14.22152 -14.10949 -13.81577 -13.80387 -13.71565 -13.60253 -13.27260 -13.06787 -13.04062 -12.71682 -12.34870 -11.94063 -11.91897 -11.69773 -11.46799 -11.17406 -10.94697 -10.85165 -10.74634 -10.43265 -10.37247 -10.16531 -10.09998 -9.91608 -9.66408 -9.35150 -9.14982 -8.83822 -6.89216 -5.75297 -3.02943 0.56092 1.40033 1.84929 2.16883 2.91170 3.41428 3.44623 3.50784 3.52583 3.62268 3.64200 4.01858 4.08445 4.21120 4.45433 4.59893 4.62595 4.68703 4.98572 5.02026 5.04259 5.07060 5.12583 5.18444 5.28182 5.49947 5.56573 5.59494 5.65372 5.70454 5.88046 6.10865 6.14095 6.18466 6.32337 6.40644 6.43209 6.57047 6.75913 6.82653 7.28589 7.61183 7.72756 7.94086 8.43846 9.55738 10.13322 10.48911 11.47689 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.003440 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.724006 B = 8137.493577 C =10069.846366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.054 3.946 3 N -0.337 5.337 4 O 0.124 5.876 5 C -0.076 4.076 6 C 0.358 3.642 7 F -0.173 7.173 8 F -0.169 7.169 9 C -0.188 4.188 10 C 0.589 3.411 11 O -0.515 6.515 12 N -0.707 5.707 13 C 0.125 3.875 14 C -0.092 4.092 15 C -0.119 4.119 16 C 0.188 3.812 17 N -0.727 5.727 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.165 4.165 27 C -0.178 4.178 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.404 0.596 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 14.688 9.661 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 N -0.039 5.039 4 O 0.057 5.943 5 C -0.140 4.140 6 C 0.303 3.697 7 F -0.154 7.154 8 F -0.150 7.150 9 C -0.195 4.195 10 C 0.371 3.629 11 O -0.391 6.391 12 N -0.357 5.357 13 C 0.003 3.997 14 C -0.130 4.130 15 C -0.120 4.120 16 C 0.060 3.940 17 N -0.372 5.372 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.202 4.202 27 C -0.215 4.215 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.163 0.837 32 H 0.239 0.761 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.218 0.782 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.803 15.387 10.470 21.036 hybrid contribution 0.878 -0.844 -0.743 1.426 sum -8.925 14.544 9.728 19.642 Atomic orbital electron populations 1.20298 0.84390 1.04752 1.04262 1.24851 0.98945 0.85822 1.01110 1.73618 0.88909 1.23004 1.18408 1.84553 1.21720 1.20860 1.67191 1.25077 0.97392 0.85539 1.06032 1.19264 0.91913 0.85582 0.72942 1.93142 1.96524 1.75576 1.50196 1.93187 1.96510 1.75469 1.49818 1.22275 0.92338 0.96286 1.08616 1.16785 0.77946 0.83534 0.84605 1.90868 1.49754 1.67026 1.31404 1.45955 1.69637 1.12274 1.07846 1.21474 1.01125 0.78802 0.98309 1.21271 1.03475 0.93341 0.94938 1.21566 0.91133 0.94438 1.04838 1.20176 0.86931 0.94083 0.92785 1.42305 1.12756 1.51723 1.30388 1.19274 0.90502 1.18311 1.08692 0.91217 1.24697 0.98504 0.99800 0.97859 1.69661 1.35367 1.36654 1.16533 0.86149 0.84519 0.78557 0.77196 1.20568 1.21942 1.21882 1.22994 1.01688 1.02905 0.92659 1.22970 0.99770 1.02708 0.96077 0.89143 0.89341 0.89499 0.83729 0.76123 0.90416 0.91364 0.91892 0.88998 0.95630 0.96447 0.78160 0.93655 0.89316 0.88656 0.88895 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.49 36.01 0.38 -0.21 16 2 C 0.05 0.58 7.59 -79.77 -0.61 -0.03 16 3 N -0.34 -3.77 12.01 34.78 0.42 -3.35 16 4 O 0.12 1.29 11.06 18.66 0.21 1.50 16 5 C -0.08 -0.83 6.98 -34.63 -0.24 -1.07 16 6 C 0.36 3.60 5.68 36.01 0.20 3.81 16 7 F -0.17 -2.23 17.32 2.25 0.04 -2.19 16 8 F -0.17 -2.20 17.32 2.25 0.04 -2.16 16 9 C -0.19 -2.30 6.24 -102.89 -0.64 -2.94 16 10 C 0.59 8.39 7.63 -12.53 -0.10 8.29 16 11 O -0.52 -9.12 17.11 5.27 0.09 -9.03 16 12 N -0.71 -9.08 5.55 -61.39 -0.34 -9.42 16 13 C 0.13 1.74 5.49 -4.04 -0.02 1.72 16 14 C -0.09 -1.31 5.20 -26.73 -0.14 -1.45 16 15 C -0.12 -1.84 1.65 -154.51 -0.25 -2.10 16 16 C 0.19 3.75 6.15 -4.04 -0.02 3.72 16 17 N -0.73 -17.99 5.23 -59.91 -0.31 -18.31 16 18 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 22 Si 0.90 22.43 29.55 -169.99 -5.02 17.40 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 C -0.17 -2.31 9.87 -26.73 -0.26 -2.58 16 27 C -0.18 -2.27 9.58 -26.73 -0.26 -2.52 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.15 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.40 4.47 8.46 -40.82 -0.35 4.13 16 33 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 34 H 0.07 0.89 7.72 -51.93 -0.40 0.49 16 35 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 36 H 0.09 1.57 6.94 -51.93 -0.36 1.21 16 37 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 38 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 39 H 0.38 9.90 6.80 -40.82 -0.28 9.63 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.09 1.00 7.90 -51.93 -0.41 0.59 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -33.99 390.40 -6.44 -40.44 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.95 Total: 8.86 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.21 Total: -2.57 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.49 Total: -58.13 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.30 Total: -7.53 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.08 Total: -4.35 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.99 -6.44 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165682454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.348 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds