Wall clock time and date at job start Wed Apr 1 2020 01:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.50215 * 2 1 4 4 C 1.38241 * 119.97133 * 89.64116 * 3 2 1 5 5 C 1.38201 * 120.02202 * 179.76541 * 4 3 2 6 6 C 1.38461 * 119.97641 * 0.50575 * 5 4 3 7 7 F 1.35098 * 120.02810 * 179.76334 * 6 5 4 8 8 C 1.38462 * 119.94468 * 359.74688 * 6 5 4 9 9 C 1.38189 * 119.97675 * 0.02562 * 8 6 5 10 10 C 1.53096 * 109.54396 * 120.11040 * 2 1 3 11 11 N 1.47008 * 109.25821 * 63.10941 * 10 2 1 12 12 C 1.38827 * 110.99865 * 182.38861 * 11 10 2 13 13 C 1.39967 * 119.96748 * 112.38686 * 12 11 10 14 14 N 1.32127 * 120.32144 * 180.02562 * 13 12 11 15 15 C 1.31939 * 120.26793 * 359.66799 * 14 13 12 16 16 C 1.40678 * 119.92986 * 0.60851 * 15 14 13 17 17 C 1.41277 * 120.15524 * 179.68555 * 16 15 14 18 18 H 1.07997 * 120.00235 * 154.55436 * 17 16 15 19 19 C 1.40052 * 119.99809 * 334.55424 * 17 16 15 20 20 N 1.30731 * 120.00259 * 334.27375 * 19 17 16 21 21 Si 1.86803 * 119.99912 * 154.26657 * 19 17 16 22 22 H 1.48500 * 109.47217 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47240 * 300.00374 * 21 19 17 24 24 H 1.48504 * 109.46985 * 60.00418 * 21 19 17 25 25 N 1.32228 * 119.97359 * 292.41590 * 12 11 10 26 26 C 1.47014 * 110.75359 * 58.61884 * 11 10 2 27 27 C 1.53100 * 109.25487 * 301.37989 * 26 11 10 28 28 O 1.43016 * 109.50720 * 239.91643 * 2 1 3 29 29 H 1.09004 * 109.47064 * 180.08649 * 1 2 3 30 30 H 1.09005 * 109.47552 * 300.08137 * 1 2 3 31 31 H 1.08997 * 109.47721 * 60.08858 * 1 2 3 32 32 H 1.07991 * 119.99009 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.01518 * 180.25305 * 5 4 3 34 34 H 1.08006 * 120.01094 * 180.02562 * 8 6 5 35 35 H 1.08005 * 119.98766 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.50580 * 303.17272 * 10 2 1 37 37 H 1.08999 * 109.50201 * 183.04567 * 10 2 1 38 38 H 1.08007 * 119.84186 * 0.02739 * 13 12 11 39 39 H 1.07995 * 120.03642 * 180.30218 * 15 14 13 40 40 H 0.96999 * 119.99748 * 354.25183 * 20 19 17 41 41 H 1.09000 * 109.50995 * 61.31576 * 26 11 10 42 42 H 1.09003 * 109.50737 * 181.45054 * 26 11 10 43 43 H 1.09004 * 109.50328 * 176.78413 * 27 26 11 44 44 H 1.09001 * 109.50713 * 296.91705 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4206 0.0000 4 6 2.2565 2.0741 1.1975 5 6 2.7225 3.3751 1.1988 6 6 2.9556 4.0277 0.0000 7 9 3.4065 5.3012 0.0000 8 6 2.7264 3.3738 -1.1988 9 6 2.2649 2.0713 -1.1975 10 6 2.0421 -0.7238 1.2481 11 7 1.6128 -2.1291 1.2041 12 6 2.0131 -2.8076 2.3471 13 6 1.0563 -3.2571 3.2645 14 7 1.4295 -3.9032 4.3550 15 6 2.7076 -4.1360 4.5854 16 6 3.6789 -3.6839 3.6736 17 6 5.0492 -3.9248 3.9190 18 1 5.7460 -3.9672 3.0950 19 6 5.5039 -4.1085 5.2309 20 7 4.8428 -3.5872 6.2309 21 14 7.0551 -5.0987 5.5516 22 1 7.3196 -5.1452 7.0121 23 1 6.8758 -6.4801 5.0372 24 1 8.2029 -4.4582 4.8605 25 7 3.2979 -3.0281 2.5686 26 6 2.1204 -2.7912 -0.0064 27 6 1.6073 -2.0467 -1.2420 28 8 2.0075 -0.6757 -1.1665 29 1 -0.3633 -1.0277 0.0016 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5124 -0.8907 32 1 2.0710 1.5663 2.1324 33 1 2.9010 3.8842 2.1344 34 1 2.9082 3.8817 -2.1345 35 1 2.0856 1.5612 -2.1325 36 1 1.6341 -0.2463 2.1389 37 1 3.1307 -0.6764 1.2752 38 1 0.0078 -3.0751 3.0801 39 1 3.0081 -4.6686 5.4755 40 1 4.0861 -3.0046 6.0610 41 1 3.2102 -2.7769 0.0007 42 1 1.7694 -3.8229 -0.0314 43 1 2.0273 -2.4995 -2.1402 44 1 0.5196 -2.1069 -1.2776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167139410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:45 Heat of formation + Delta-G solvation = -15.795233 kcal Electronic energy + Delta-G solvation = -29806.516540 eV Core-core repulsion = 25638.147480 eV Total energy + Delta-G solvation = -4168.369061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.01756 -40.69768 -39.42128 -38.40567 -35.77258 -34.33465 -33.42166 -32.26213 -31.28655 -29.78720 -29.26045 -28.24798 -26.23397 -25.54727 -24.08224 -22.93737 -22.66269 -22.10039 -21.14700 -19.24219 -18.44756 -17.90004 -17.05362 -16.70084 -16.33386 -15.83966 -15.71130 -15.40127 -15.24511 -14.95160 -14.82379 -14.46025 -14.25276 -14.09917 -13.77376 -13.45244 -13.43862 -13.22900 -12.91944 -12.81717 -12.29615 -12.21343 -12.01752 -11.74428 -11.58653 -11.44865 -11.26679 -11.20899 -11.07936 -10.55924 -10.48258 -10.30850 -10.07657 -9.85361 -9.72097 -9.28062 -9.24232 -8.71428 -8.52285 -8.02699 -7.58292 -7.52867 -4.91553 0.96177 1.10387 2.13123 2.57141 3.02990 3.11269 3.24474 3.37185 3.65865 3.79871 3.95442 4.11674 4.27720 4.56713 4.67323 4.74562 4.83975 4.97721 5.14629 5.15815 5.23216 5.27556 5.35772 5.45804 5.55056 5.58431 5.68583 5.73044 5.78106 5.80782 5.86666 5.94958 5.98757 6.05024 6.10603 6.15406 6.20118 6.29156 6.36582 6.57028 6.72866 6.84609 7.05384 7.18890 7.19654 7.32469 7.63037 7.73872 8.14412 8.42092 8.87802 9.36165 9.69402 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.003133 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.426848 B = 8934.077798 C =10159.429546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.163 3.837 3 C -0.078 4.078 4 C -0.081 4.081 5 C -0.152 4.152 6 C 0.094 3.906 7 F -0.143 7.143 8 C -0.157 4.157 9 C -0.065 4.065 10 C 0.042 3.958 11 N -0.473 5.473 12 C 0.272 3.728 13 C -0.080 4.080 14 N -0.421 5.421 15 C -0.050 4.050 16 C 0.217 3.783 17 C -0.475 4.475 18 H 0.088 0.912 19 C 0.039 3.961 20 N -0.775 5.775 21 Si 1.074 2.926 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.272 1.272 25 N -0.552 5.552 26 C 0.023 3.977 27 C 0.065 3.935 28 O -0.373 6.373 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.299 0.701 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 8.808 -11.642 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.124 3.876 3 C -0.079 4.079 4 C -0.099 4.099 5 C -0.171 4.171 6 C 0.075 3.925 7 F -0.121 7.121 8 C -0.176 4.176 9 C -0.083 4.083 10 C -0.086 4.086 11 N -0.197 5.197 12 C 0.035 3.965 13 C -0.240 4.240 14 N -0.133 5.133 15 C -0.220 4.220 16 C 0.090 3.910 17 C -0.508 4.508 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.398 5.398 21 Si 0.896 3.104 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.197 1.197 25 N -0.274 5.274 26 C -0.105 4.105 27 C -0.012 4.012 28 O -0.292 6.292 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.258 8.381 -10.553 14.133 hybrid contribution -0.189 0.771 -0.965 1.249 sum -4.447 9.151 -11.518 15.369 Atomic orbital electron populations 1.22271 0.93687 1.03796 1.02299 1.20133 0.93792 0.88073 0.85649 1.19574 1.00420 0.94384 0.93523 1.20949 0.97042 0.93644 0.98227 1.21102 1.02888 0.95817 0.97253 1.17756 1.00226 0.79712 0.94796 1.91489 1.86785 1.36394 1.97462 1.21139 1.03396 0.95991 0.97036 1.20848 0.96053 0.92774 0.98586 1.22721 0.99910 0.88381 0.97596 1.60378 1.57240 1.01473 1.00583 1.20514 0.90197 0.94609 0.91160 1.22325 0.98664 1.09109 0.93859 1.67837 1.19079 1.09025 1.17317 1.23506 0.88479 1.06284 1.03735 1.19205 0.95077 0.88808 0.87949 1.20432 0.92735 1.41286 0.96356 0.89420 1.27309 1.04118 0.95744 0.91344 1.70466 1.16074 1.17954 1.35273 0.83497 0.72966 0.76411 0.77532 1.19422 1.19562 1.19739 1.68896 1.16192 1.18215 1.24099 1.22718 0.99946 0.98513 0.89319 1.22716 0.99746 0.81211 0.97479 1.87969 1.75729 1.23468 1.42037 0.90232 0.91452 0.92239 0.84638 0.84563 0.84747 0.84323 0.89939 0.92422 0.84594 0.83606 0.88722 0.92275 0.90031 0.88357 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.15 37.16 0.30 -1.59 16 2 C 0.16 2.19 0.93 -91.72 -0.09 2.10 16 3 C -0.08 -0.99 4.84 -104.62 -0.51 -1.50 16 4 C -0.08 -0.99 9.14 -39.59 -0.36 -1.35 16 5 C -0.15 -1.76 10.03 -39.51 -0.40 -2.16 16 6 C 0.09 1.11 7.30 -39.42 -0.29 0.83 16 7 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 8 C -0.16 -1.70 10.03 -39.52 -0.40 -2.10 16 9 C -0.06 -0.74 9.35 -39.60 -0.37 -1.11 16 10 C 0.04 0.68 3.43 -3.72 -0.01 0.67 16 11 N -0.47 -8.39 4.07 -172.73 -0.70 -9.09 16 12 C 0.27 5.98 5.36 -155.02 -0.83 5.15 16 13 C -0.08 -1.81 11.17 -16.78 -0.19 -2.00 16 14 N -0.42 -10.32 10.47 -12.11 -0.13 -10.45 16 15 C -0.05 -1.28 9.14 -16.59 -0.15 -1.43 16 16 C 0.22 5.65 6.13 -84.83 -0.52 5.13 16 17 C -0.48 -12.13 9.22 -37.75 -0.35 -12.48 16 18 H 0.09 2.23 7.96 -52.49 -0.42 1.81 16 19 C 0.04 0.94 4.93 -17.34 -0.09 0.85 16 20 N -0.78 -19.29 12.31 55.55 0.68 -18.60 16 21 Si 1.07 19.99 30.00 -169.99 -5.10 14.89 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 25 N -0.55 -13.69 9.73 -10.14 -0.10 -13.79 16 26 C 0.02 0.37 5.43 -3.71 -0.02 0.35 16 27 C 0.07 0.82 6.61 37.21 0.25 1.06 16 28 O -0.37 -5.16 9.27 -35.23 -0.33 -5.48 16 29 H 0.08 0.96 6.13 -51.93 -0.32 0.64 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.14 1.61 6.26 -52.49 -0.33 1.28 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.14 1.45 7.48 -52.48 -0.39 1.05 16 36 H 0.08 1.33 6.70 -51.93 -0.35 0.99 16 37 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 38 H 0.14 2.72 8.06 -52.48 -0.42 2.29 16 39 H 0.15 3.74 6.49 -52.49 -0.34 3.40 16 40 H 0.30 7.76 6.71 -40.82 -0.27 7.49 16 41 H 0.06 1.10 7.85 -51.93 -0.41 0.70 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.70 6.49 -51.93 -0.34 0.36 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -27.90 362.49 -9.52 -37.42 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.34 Total: 10.92 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -4.01 Total: -9.57 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.24 Total: -51.94 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.33 Total: -5.48 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.10 Total: 14.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.90 -9.52 -37.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167139410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.620 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds