Wall clock time and date at job start Wed Apr 1 2020 01:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.50549 * 2 1 4 4 C 1.38239 * 119.97065 * 270.35715 * 3 2 1 5 5 C 1.38199 * 120.02175 * 180.23450 * 4 3 2 6 6 C 1.38457 * 119.97635 * 359.49327 * 5 4 3 7 7 F 1.35098 * 120.02739 * 180.23272 * 6 5 4 8 8 C 1.38458 * 119.94818 * 0.25431 * 6 5 4 9 9 C 1.38199 * 119.97266 * 359.97438 * 8 6 5 10 10 C 1.53097 * 109.54119 * 239.88777 * 2 1 3 11 11 N 1.47012 * 109.25951 * 296.89364 * 10 2 1 12 12 C 1.38824 * 110.99876 * 177.61005 * 11 10 2 13 13 C 1.39970 * 119.96746 * 247.58620 * 12 11 10 14 14 N 1.32126 * 120.31542 * 179.97438 * 13 12 11 15 15 C 1.31936 * 120.27337 * 359.97438 * 14 13 12 16 16 C 1.40682 * 119.93027 * 0.02562 * 15 14 13 17 17 C 1.41277 * 120.15238 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00221 * 353.79421 * 17 16 15 19 19 C 1.40049 * 119.99927 * 173.79736 * 17 16 15 20 20 N 1.30732 * 120.00372 * 6.31525 * 19 17 16 21 21 Si 1.86801 * 120.00019 * 186.31370 * 19 17 16 22 22 H 1.48497 * 109.47085 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46982 * 120.00369 * 21 19 17 24 24 H 1.48500 * 109.47663 * 239.99721 * 21 19 17 25 25 N 1.32237 * 119.97113 * 67.31777 * 12 11 10 26 26 C 1.47019 * 110.75185 * 301.38895 * 11 10 2 27 27 C 1.53094 * 109.26116 * 58.61521 * 26 11 10 28 28 O 1.43014 * 109.25637 * 303.15033 * 27 26 11 29 29 H 1.09002 * 109.46846 * 60.00164 * 1 2 3 30 30 H 1.09001 * 109.47478 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47037 * 300.00569 * 1 2 3 32 32 H 1.08003 * 119.99021 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.01323 * 179.77038 * 5 4 3 34 34 H 1.07999 * 120.01689 * 180.02562 * 8 6 5 35 35 H 1.08008 * 119.99055 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.50303 * 56.83161 * 10 2 1 37 37 H 1.09004 * 109.50193 * 176.96115 * 10 2 1 38 38 H 1.07998 * 119.84238 * 0.02562 * 13 12 11 39 39 H 1.07994 * 120.03217 * 180.02562 * 15 14 13 40 40 H 0.96996 * 120.00707 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.50068 * 298.67792 * 26 11 10 42 42 H 1.09000 * 109.54278 * 178.57459 * 26 11 10 43 43 H 1.08994 * 109.50515 * 183.21701 * 27 26 11 44 44 H 1.08999 * 109.53991 * 63.10592 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0333 1.4205 0.0000 4 6 2.2568 2.0740 -1.1975 5 6 2.7228 3.3750 -1.1988 6 6 2.9559 4.0275 -0.0001 7 9 3.4070 5.3010 -0.0001 8 6 2.7266 3.3738 1.1987 9 6 2.2651 2.0712 1.1975 10 6 2.0421 -0.7238 -1.2481 11 7 1.6127 -2.1292 -1.2041 12 6 2.0130 -2.8077 -2.3471 13 6 1.0560 -3.2576 -3.2642 14 7 1.4293 -3.9037 -4.3546 15 6 2.7079 -4.1299 -4.5889 16 6 3.6789 -3.6825 -3.6745 17 6 5.0493 -3.9217 -3.9209 18 1 5.3485 -4.5344 -4.7585 19 6 6.0198 -3.3644 -3.0789 20 7 5.6581 -2.7269 -1.9964 21 14 7.8314 -3.5319 -3.5027 22 1 7.9750 -4.2915 -4.7706 23 1 8.4287 -2.1819 -3.6646 24 1 8.5307 -4.2546 -2.4101 25 7 3.2982 -3.0236 -2.5712 26 6 2.1202 -2.7912 0.0066 27 6 1.6073 -2.0467 1.2420 28 8 2.0075 -0.6758 1.1665 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.0712 1.5662 -2.1325 33 1 2.9010 3.8841 -2.1345 34 1 2.9076 3.8819 2.1344 35 1 2.0865 1.5608 2.1325 36 1 1.6341 -0.2463 -2.1388 37 1 3.1308 -0.6766 -1.2752 38 1 0.0077 -3.0752 -3.0800 39 1 3.0086 -4.6580 -5.4816 40 1 6.3302 -2.3413 -1.4131 41 1 3.2101 -2.7770 -0.0006 42 1 1.7698 -3.8231 0.0319 43 1 2.0271 -2.4995 2.1402 44 1 0.5195 -2.1068 1.2784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167139411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:48 Heat of formation + Delta-G solvation = -3.359110 kcal Electronic energy + Delta-G solvation = -30294.651494 eV Core-core repulsion = 26126.821704 eV Total energy + Delta-G solvation = -4167.829790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.93151 -40.47877 -39.15708 -38.20426 -35.37335 -34.10152 -33.24515 -31.66521 -31.17279 -29.96130 -29.13403 -28.22645 -26.30188 -25.31785 -23.89757 -22.80888 -22.52605 -21.89925 -20.84162 -19.02394 -17.93941 -17.67738 -16.94034 -16.54581 -16.04596 -15.63452 -15.55525 -15.28044 -15.01714 -14.99491 -14.66335 -14.35327 -14.29006 -13.91140 -13.63109 -13.31208 -13.15459 -13.03284 -12.71061 -12.64085 -12.16162 -11.94299 -11.63506 -11.54895 -11.46148 -11.37837 -11.27047 -11.03340 -10.89427 -10.87569 -10.51565 -10.15497 -9.91445 -9.65010 -9.49455 -9.13283 -9.07746 -8.58276 -8.23738 -7.82159 -7.46641 -6.60449 -4.78773 1.07793 1.21359 2.33762 2.82151 2.96900 3.00934 3.09994 3.49783 3.76832 3.83962 4.20578 4.23058 4.51528 4.70092 4.81362 4.86307 5.04220 5.15943 5.30146 5.36185 5.41173 5.53689 5.56757 5.69139 5.74211 5.77131 5.83999 5.86917 5.91849 6.00420 6.04903 6.08380 6.14243 6.25278 6.32916 6.37999 6.40012 6.50710 6.62908 6.72928 6.83979 6.88566 7.09065 7.31393 7.39735 7.42084 7.77155 8.00943 8.36089 8.62180 9.14387 9.69515 10.02193 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.003904 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.653818 B = 7170.115190 C = 8508.022309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.163 3.837 3 C -0.074 4.074 4 C -0.079 4.079 5 C -0.153 4.153 6 C 0.092 3.908 7 F -0.144 7.144 8 C -0.158 4.158 9 C -0.065 4.065 10 C 0.043 3.957 11 N -0.472 5.472 12 C 0.263 3.737 13 C -0.087 4.087 14 N -0.427 5.427 15 C -0.068 4.068 16 C 0.217 3.783 17 C -0.414 4.414 18 H 0.091 0.909 19 C 0.068 3.932 20 N -0.710 5.710 21 Si 0.910 3.090 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.272 1.272 25 N -0.474 5.474 26 C 0.023 3.977 27 C 0.066 3.934 28 O -0.373 6.373 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.276 0.724 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 8.596 7.535 12.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.123 3.877 3 C -0.075 4.075 4 C -0.097 4.097 5 C -0.171 4.171 6 C 0.073 3.927 7 F -0.123 7.123 8 C -0.176 4.176 9 C -0.083 4.083 10 C -0.084 4.084 11 N -0.196 5.196 12 C 0.024 3.976 13 C -0.247 4.247 14 N -0.139 5.139 15 C -0.237 4.237 16 C 0.089 3.911 17 C -0.446 4.446 18 H 0.109 0.891 19 C -0.159 4.159 20 N -0.330 5.330 21 Si 0.734 3.266 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.197 1.197 25 N -0.194 5.194 26 C -0.105 4.105 27 C -0.011 4.011 28 O -0.292 6.292 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.103 8.848 7.897 12.911 hybrid contribution 1.736 0.033 -0.375 1.776 sum -3.367 8.881 7.522 12.115 Atomic orbital electron populations 1.22267 0.93969 1.03709 1.02031 1.20140 0.93530 0.88009 0.86040 1.19599 1.00021 0.94476 0.93416 1.20952 0.96951 0.93540 0.98304 1.21084 1.03030 0.95868 0.97150 1.17743 1.00462 0.79683 0.94823 1.91480 1.86843 1.36478 1.97471 1.21123 1.03514 0.96033 0.96961 1.20854 0.96091 0.92729 0.98648 1.22681 1.00510 0.88434 0.96817 1.60412 1.57061 1.01387 1.00709 1.20733 0.90886 0.94736 0.91290 1.22252 0.98545 1.09305 0.94585 1.67730 1.19009 1.09213 1.17915 1.23157 0.89054 1.09279 1.02218 1.19231 0.94496 0.89463 0.87872 1.19682 0.89148 1.25561 1.10195 0.89099 1.26112 1.01733 0.93907 0.94111 1.70060 1.35472 1.20076 1.07424 0.86210 0.81290 0.79174 0.79927 1.18119 1.19663 1.19682 1.69446 1.13593 1.16432 1.19947 1.22693 1.00885 0.97896 0.89002 1.22699 0.99351 0.81273 0.97759 1.87956 1.75780 1.23514 1.41982 0.91608 0.90247 0.92486 0.84616 0.84691 0.84867 0.84379 0.90493 0.91626 0.85172 0.84891 0.91303 0.91109 0.90577 0.88696 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.15 37.16 0.30 -1.75 16 2 C 0.16 2.38 0.93 -91.72 -0.09 2.29 16 3 C -0.07 -1.02 4.84 -104.62 -0.51 -1.53 16 4 C -0.08 -1.05 9.14 -39.60 -0.36 -1.42 16 5 C -0.15 -1.90 10.03 -39.52 -0.40 -2.29 16 6 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16 7 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 8 C -0.16 -1.86 10.03 -39.51 -0.40 -2.25 16 9 C -0.07 -0.82 9.35 -39.59 -0.37 -1.19 16 10 C 0.04 0.77 3.43 -3.71 -0.01 0.76 16 11 N -0.47 -8.94 4.07 -172.72 -0.70 -9.64 16 12 C 0.26 5.97 5.36 -155.02 -0.83 5.14 16 13 C -0.09 -1.98 11.17 -16.78 -0.19 -2.16 16 14 N -0.43 -10.26 10.47 -12.11 -0.13 -10.39 16 15 C -0.07 -1.64 10.97 -16.58 -0.18 -1.83 16 16 C 0.22 5.59 6.54 -84.83 -0.55 5.04 16 17 C -0.41 -10.29 9.15 -37.75 -0.35 -10.63 16 18 H 0.09 2.10 7.86 -52.48 -0.41 1.68 16 19 C 0.07 1.61 5.49 -17.34 -0.10 1.51 16 20 N -0.71 -17.53 11.51 55.55 0.64 -16.89 16 21 Si 0.91 17.55 29.56 -169.99 -5.03 12.52 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 N -0.47 -11.99 7.34 -10.14 -0.07 -12.07 16 26 C 0.02 0.41 5.44 -3.71 -0.02 0.39 16 27 C 0.07 0.93 6.61 37.21 0.25 1.18 16 28 O -0.37 -5.71 9.27 -35.23 -0.33 -6.04 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.05 6.13 -51.93 -0.32 0.73 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.75 6.26 -52.48 -0.33 1.42 16 33 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.14 1.60 7.48 -52.48 -0.39 1.21 16 36 H 0.08 1.34 6.70 -51.93 -0.35 0.99 16 37 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 38 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 39 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 40 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 41 H 0.07 1.51 7.86 -51.93 -0.41 1.10 16 42 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 0.74 6.49 -51.93 -0.34 0.40 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -27.81 364.64 -9.65 -37.45 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.48 Total: 9.25 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -4.08 Total: -7.86 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.26 Total: -48.99 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.33 Total: -6.04 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.81 -9.65 -37.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167139411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.094 kcal (2) G-P(sol) polarization free energy of solvation -27.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds