Wall clock time and date at job start Wed Apr 1 2020 01:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.50549 * 2 1 4 4 C 1.38239 * 119.97065 * 270.35715 * 3 2 1 5 5 C 1.38199 * 120.02175 * 180.23450 * 4 3 2 6 6 C 1.38457 * 119.97635 * 359.49327 * 5 4 3 7 7 F 1.35098 * 120.02739 * 180.23272 * 6 5 4 8 8 C 1.38458 * 119.94818 * 0.25431 * 6 5 4 9 9 C 1.38199 * 119.97266 * 359.97438 * 8 6 5 10 10 C 1.53097 * 109.54119 * 239.88777 * 2 1 3 11 11 N 1.47012 * 109.25951 * 296.89364 * 10 2 1 12 12 C 1.38824 * 110.99876 * 177.61005 * 11 10 2 13 13 C 1.39970 * 119.96746 * 247.58620 * 12 11 10 14 14 N 1.32126 * 120.31542 * 179.97438 * 13 12 11 15 15 C 1.31936 * 120.27337 * 359.97438 * 14 13 12 16 16 C 1.40682 * 119.93027 * 0.02562 * 15 14 13 17 17 C 1.41277 * 120.15238 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00221 * 353.79421 * 17 16 15 19 19 C 1.40049 * 119.99927 * 173.79736 * 17 16 15 20 20 N 1.30732 * 120.00372 * 6.31525 * 19 17 16 21 21 Si 1.86801 * 120.00019 * 186.31370 * 19 17 16 22 22 H 1.48497 * 109.47085 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46982 * 120.00369 * 21 19 17 24 24 H 1.48500 * 109.47663 * 239.99721 * 21 19 17 25 25 N 1.32237 * 119.97113 * 67.31777 * 12 11 10 26 26 C 1.47019 * 110.75185 * 301.38895 * 11 10 2 27 27 C 1.53094 * 109.26116 * 58.61521 * 26 11 10 28 28 O 1.43014 * 109.25637 * 303.15033 * 27 26 11 29 29 H 1.09002 * 109.46846 * 60.00164 * 1 2 3 30 30 H 1.09001 * 109.47478 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47037 * 300.00569 * 1 2 3 32 32 H 1.08003 * 119.99021 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.01323 * 179.77038 * 5 4 3 34 34 H 1.07999 * 120.01689 * 180.02562 * 8 6 5 35 35 H 1.08008 * 119.99055 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.50303 * 56.83161 * 10 2 1 37 37 H 1.09004 * 109.50193 * 176.96115 * 10 2 1 38 38 H 1.07998 * 119.84238 * 0.02562 * 13 12 11 39 39 H 1.07994 * 120.03217 * 180.02562 * 15 14 13 40 40 H 0.96996 * 120.00707 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.50068 * 298.67792 * 26 11 10 42 42 H 1.09000 * 109.54278 * 178.57459 * 26 11 10 43 43 H 1.08994 * 109.50515 * 183.21701 * 27 26 11 44 44 H 1.08999 * 109.53991 * 63.10592 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0333 1.4205 0.0000 4 6 2.2568 2.0740 -1.1975 5 6 2.7228 3.3750 -1.1988 6 6 2.9559 4.0275 -0.0001 7 9 3.4070 5.3010 -0.0001 8 6 2.7266 3.3738 1.1987 9 6 2.2651 2.0712 1.1975 10 6 2.0421 -0.7238 -1.2481 11 7 1.6127 -2.1292 -1.2041 12 6 2.0130 -2.8077 -2.3471 13 6 1.0560 -3.2576 -3.2642 14 7 1.4293 -3.9037 -4.3546 15 6 2.7079 -4.1299 -4.5889 16 6 3.6789 -3.6825 -3.6745 17 6 5.0493 -3.9217 -3.9209 18 1 5.3485 -4.5344 -4.7585 19 6 6.0198 -3.3644 -3.0789 20 7 5.6581 -2.7269 -1.9964 21 14 7.8314 -3.5319 -3.5027 22 1 7.9750 -4.2915 -4.7706 23 1 8.4287 -2.1819 -3.6646 24 1 8.5307 -4.2546 -2.4101 25 7 3.2982 -3.0236 -2.5712 26 6 2.1202 -2.7912 0.0066 27 6 1.6073 -2.0467 1.2420 28 8 2.0075 -0.6758 1.1665 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.0712 1.5662 -2.1325 33 1 2.9010 3.8841 -2.1345 34 1 2.9076 3.8819 2.1344 35 1 2.0865 1.5608 2.1325 36 1 1.6341 -0.2463 -2.1388 37 1 3.1308 -0.6766 -1.2752 38 1 0.0077 -3.0752 -3.0800 39 1 3.0086 -4.6580 -5.4816 40 1 6.3302 -2.3413 -1.4131 41 1 3.2101 -2.7770 -0.0006 42 1 1.7698 -3.8231 0.0319 43 1 2.0271 -2.4995 2.1402 44 1 0.5195 -2.1068 1.2784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167139411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:47 Heat of formation + Delta-G solvation = -18.216408 kcal Electronic energy + Delta-G solvation = -30295.295755 eV Core-core repulsion = 26126.821704 eV Total energy + Delta-G solvation = -4168.474051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.92710 -41.82049 -40.74092 -39.41761 -36.88368 -35.93755 -34.39456 -33.49166 -32.18702 -31.64858 -30.25466 -29.51369 -28.07646 -26.80061 -25.12597 -24.26512 -23.80641 -23.40250 -22.29586 -20.31366 -19.58785 -18.91998 -18.29985 -17.74068 -17.50449 -17.10066 -16.83464 -16.74165 -16.62206 -16.27807 -16.02740 -15.81747 -15.40792 -15.17564 -14.83187 -14.72357 -14.54390 -14.23460 -14.11380 -13.79861 -13.40473 -13.34533 -13.19607 -13.05932 -12.99813 -12.72161 -12.67612 -12.38108 -12.26590 -12.07363 -12.00129 -11.71571 -11.52132 -11.35271 -10.91119 -10.78108 -10.10219 -9.91932 -9.67707 -9.57589 -9.26651 -8.41443 -6.69400 0.06433 0.24160 0.50850 1.02673 1.37132 1.47195 1.52653 2.13937 2.46859 2.63667 2.70751 2.79356 3.23166 3.58502 3.71649 3.74188 3.84144 3.89893 3.98978 4.07097 4.10474 4.23841 4.27069 4.30700 4.36448 4.44214 4.47573 4.54836 4.70138 4.79843 4.83177 4.90937 4.94306 4.97460 5.04209 5.05609 5.08379 5.11018 5.22287 5.27464 5.36517 5.48114 5.60776 5.83153 5.87237 5.94282 6.17705 6.19783 6.51620 6.76165 7.26697 7.82769 8.23842 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.003904 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.653818 B = 7170.115190 C = 8508.022309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 C -0.088 4.088 4 C -0.091 4.091 5 C -0.155 4.155 6 C 0.083 3.917 7 F -0.146 7.146 8 C -0.151 4.151 9 C -0.066 4.066 10 C 0.053 3.947 11 N -0.460 5.460 12 C 0.258 3.742 13 C -0.093 4.093 14 N -0.434 5.434 15 C -0.085 4.085 16 C 0.187 3.813 17 C -0.438 4.438 18 H 0.102 0.898 19 C 0.027 3.973 20 N -0.741 5.741 21 Si 0.987 3.013 22 H -0.248 1.248 23 H -0.270 1.270 24 H -0.266 1.266 25 N -0.496 5.496 26 C 0.027 3.973 27 C 0.073 3.927 28 O -0.380 6.380 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.075 0.925 37 H 0.022 0.978 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.280 0.720 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 9.416 8.776 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.130 3.870 3 C -0.089 4.089 4 C -0.109 4.109 5 C -0.174 4.174 6 C 0.064 3.936 7 F -0.124 7.124 8 C -0.169 4.169 9 C -0.084 4.084 10 C -0.075 4.075 11 N -0.184 5.184 12 C 0.019 3.981 13 C -0.253 4.253 14 N -0.146 5.146 15 C -0.254 4.254 16 C 0.060 3.940 17 C -0.470 4.470 18 H 0.120 0.880 19 C -0.197 4.197 20 N -0.362 5.362 21 Si 0.807 3.193 22 H -0.171 1.171 23 H -0.195 1.195 24 H -0.191 1.191 25 N -0.217 5.217 26 C -0.101 4.101 27 C -0.003 4.003 28 O -0.299 6.299 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.327 9.660 9.128 14.318 hybrid contribution 1.756 -0.196 -0.744 1.917 sum -3.571 9.464 8.384 13.138 Atomic orbital electron populations 1.22221 0.91949 1.03856 1.03304 1.20102 0.94884 0.87953 0.84031 1.19642 1.00975 0.94087 0.94198 1.20969 0.97730 0.94046 0.98164 1.21242 1.02526 0.95586 0.98006 1.17902 1.00728 0.79736 0.95270 1.91476 1.86898 1.36570 1.97498 1.21377 1.02174 0.95674 0.97694 1.20985 0.95857 0.93037 0.98519 1.22614 0.97829 0.88028 0.98992 1.60520 1.56217 1.01714 0.99912 1.21142 0.90268 0.94319 0.92386 1.22656 0.99644 1.08760 0.94248 1.67748 1.18872 1.09497 1.18451 1.23364 0.89099 1.10065 1.02825 1.19671 0.95545 0.90205 0.88565 1.20078 0.89476 1.26316 1.11091 0.88019 1.27013 1.06143 0.93002 0.93549 1.70165 1.37133 1.20562 1.08342 0.85061 0.75111 0.79113 0.79984 1.17104 1.19497 1.19099 1.69478 1.14966 1.16975 1.20244 1.22706 0.98437 0.98680 0.90314 1.22793 1.00754 0.80340 0.96409 1.87953 1.76268 1.23881 1.41844 0.91095 0.90570 0.90504 0.85131 0.83334 0.82363 0.83144 0.90629 0.95964 0.82887 0.83369 0.90915 0.95216 0.90722 0.86247 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.15 71.98 0.59 -3.03 16 2 C 0.17 4.83 0.93 -11.50 -0.01 4.82 16 3 C -0.09 -2.36 4.84 -19.86 -0.10 -2.45 16 4 C -0.09 -2.40 9.14 22.26 0.20 -2.20 16 5 C -0.15 -3.74 10.03 22.31 0.22 -3.52 16 6 C 0.08 1.97 7.30 22.37 0.16 2.14 16 7 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 8 C -0.15 -3.22 10.03 22.31 0.22 -3.00 16 9 C -0.07 -1.53 9.35 22.26 0.21 -1.32 16 10 C 0.05 1.94 3.43 86.31 0.30 2.23 16 11 N -0.46 -17.65 4.07 -700.37 -2.85 -20.50 16 12 C 0.26 12.04 5.36 133.38 0.71 12.76 16 13 C -0.09 -4.24 11.17 85.07 0.95 -3.29 16 14 N -0.43 -21.06 10.47 -192.23 -2.01 -23.07 16 15 C -0.09 -4.24 10.97 85.27 0.94 -3.30 16 16 C 0.19 9.98 6.54 40.15 0.26 10.24 16 17 C -0.44 -22.27 9.15 23.46 0.21 -22.05 16 18 H 0.10 4.75 7.86 -2.91 -0.02 4.72 16 19 C 0.03 1.27 5.49 85.30 0.47 1.74 16 20 N -0.74 -37.80 11.51 21.84 0.25 -37.55 16 21 Si 0.99 36.04 29.56 68.60 2.03 38.07 16 22 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 23 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 24 H -0.27 -9.42 7.11 99.48 0.71 -8.72 16 25 N -0.50 -26.08 7.34 -185.99 -1.36 -27.44 16 26 C 0.03 0.96 5.44 86.31 0.47 1.43 16 27 C 0.07 1.95 6.61 72.01 0.48 2.43 16 28 O -0.38 -11.11 9.27 -148.98 -1.38 -12.49 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.82 6.13 -2.39 -0.01 1.80 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.13 3.48 6.26 -2.91 -0.02 3.47 16 33 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.15 3.09 7.48 -2.91 -0.02 3.07 16 36 H 0.08 2.71 6.70 -2.39 -0.02 2.70 16 37 H 0.02 1.00 8.05 -2.38 -0.02 0.98 16 38 H 0.15 6.17 8.06 -2.91 -0.02 6.15 16 39 H 0.15 6.66 8.06 -2.91 -0.02 6.64 16 40 H 0.28 13.14 8.29 -92.71 -0.77 12.37 16 41 H 0.03 1.32 7.86 -2.39 -0.02 1.30 16 42 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.08 1.84 6.49 -2.39 -0.02 1.83 16 Total: -1.00 -61.67 364.64 2.77 -58.90 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 1.03 Total: 33.23 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 6.29 Total: -6.38 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -5.98 Total: -108.57 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.38 Total: -12.49 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Total: -61.67 2.77 -58.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167139411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.682 kcal (2) G-P(sol) polarization free energy of solvation -61.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds