Wall clock time and date at job start Wed Apr 1 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30213 * 126.79305 * 2 1 4 4 O 1.20923 * 111.64864 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.55027 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 126.79752 * 179.97438 * 5 4 3 7 7 C 1.35676 * 106.40782 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.01454 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47425 * 90.01905 * 8 7 5 10 10 O 1.21289 * 119.99917 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99940 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99535 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46599 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47075 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47453 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47453 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47075 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.46721 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99897 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00191 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00456 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00458 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99556 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47297 * 89.99763 * 23 21 19 25 25 H 1.48499 * 109.47159 * 209.99769 * 23 21 19 26 26 H 1.48503 * 109.47136 * 329.99771 * 23 21 19 27 27 H 1.08997 * 109.47781 * 90.01477 * 1 2 3 28 28 H 1.09000 * 109.47426 * 210.02529 * 1 2 3 29 29 H 1.09005 * 109.46928 * 330.01776 * 1 2 3 30 30 H 1.09002 * 109.47001 * 210.02490 * 8 7 5 31 31 H 1.09007 * 109.46954 * 330.02154 * 8 7 5 32 32 H 0.96998 * 120.00432 * 0.02562 * 11 9 8 33 33 H 1.08997 * 109.46852 * 299.99594 * 12 11 9 34 34 H 1.08990 * 109.47424 * 60.00236 * 12 11 9 35 35 H 1.08997 * 109.47190 * 299.99390 * 13 12 11 36 36 H 1.09007 * 109.47279 * 59.99794 * 13 12 11 37 37 H 1.09002 * 109.47255 * 300.00022 * 14 13 12 38 38 H 1.08999 * 109.47179 * 59.99606 * 14 13 12 39 39 H 1.09005 * 109.47408 * 300.00244 * 15 14 13 40 40 H 1.09007 * 109.47087 * 59.99927 * 15 14 13 41 41 H 1.08997 * 109.46815 * 299.99870 * 16 15 14 42 42 H 1.08994 * 109.46738 * 59.99768 * 16 15 14 43 43 H 1.08997 * 109.47190 * 299.99637 * 17 16 15 44 44 H 1.08999 * 109.47438 * 59.99765 * 17 16 15 45 45 H 0.96999 * 120.00744 * 359.97438 * 18 17 16 46 46 H 0.96996 * 120.00128 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 0.0005 5 6 3.6036 -0.6054 0.0004 6 17 5.1011 -1.4837 0.0003 7 6 2.3530 -1.1315 0.0003 8 6 1.9578 -2.5858 -0.0005 9 6 1.8259 -3.0712 1.4201 10 8 2.0319 -2.3109 2.3424 11 7 1.4789 -4.3502 1.6656 12 6 1.3500 -4.8219 3.0467 13 6 0.9490 -6.2984 3.0458 14 6 0.8150 -6.7913 4.4881 15 6 0.4134 -8.2676 4.4874 16 6 0.2800 -8.7606 5.9296 17 6 -0.1210 -10.2372 5.9288 18 7 -0.2481 -10.7093 7.3097 19 6 -0.6013 -12.0086 7.5593 20 1 -0.7859 -12.6854 6.7380 21 6 -0.7212 -12.4563 8.8678 22 7 -1.0602 -13.7053 9.1076 23 14 -0.4013 -11.2860 10.2882 24 1 -1.6676 -10.6088 10.6664 25 1 0.1181 -12.0495 11.4512 26 1 0.5998 -10.2695 9.8763 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5136 30 1 1.0039 -2.7028 -0.5146 31 1 2.7216 -3.1695 -0.5144 32 1 1.3145 -4.9583 0.9281 33 1 2.3037 -4.7043 3.5612 34 1 0.5858 -4.2385 3.5601 35 1 -0.0048 -6.4155 2.5315 36 1 1.7129 -6.8822 2.5322 37 1 1.7690 -6.6742 5.0022 38 1 0.0514 -6.2076 5.0021 39 1 -0.5408 -8.3843 3.9734 40 1 1.1768 -8.8516 3.9732 41 1 1.2344 -8.6440 6.4431 42 1 -0.4831 -8.1767 6.4440 43 1 -1.0752 -10.3542 5.4152 44 1 0.6424 -10.8208 5.4144 45 1 -0.0820 -10.1017 8.0474 46 1 -1.1444 -14.0179 10.0219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179816272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:57 Heat of formation + Delta-G solvation = 8.406893 kcal Electronic energy + Delta-G solvation = -25696.388892 eV Core-core repulsion = 21650.096770 eV Total energy + Delta-G solvation = -4046.292122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -45.57965 -40.18018 -37.78293 -37.04283 -35.96807 -35.50234 -34.10766 -33.03258 -31.99939 -30.61561 -29.59920 -29.08288 -27.06531 -24.24508 -22.83254 -22.09018 -22.01169 -21.34206 -20.87411 -20.56506 -18.45474 -18.29171 -17.51729 -17.31753 -16.59471 -16.45121 -15.98472 -15.41314 -14.71510 -14.60508 -14.27554 -14.17660 -13.94443 -13.86770 -13.68157 -13.28776 -13.23160 -13.20873 -12.97460 -12.72617 -12.71953 -12.46135 -12.40978 -11.83818 -11.65373 -11.49648 -11.45375 -11.04346 -10.88890 -10.81121 -10.67174 -10.42964 -10.39449 -10.23565 -10.08244 -9.74731 -9.57666 -9.52498 -8.87814 -7.21161 -5.75847 -3.10963 0.50109 0.68131 1.48507 2.14665 2.71056 3.05004 3.38357 3.41421 3.45776 3.45954 3.90795 4.16523 4.22056 4.39207 4.48048 4.60366 4.64245 4.72896 4.83450 4.87964 4.93835 5.02981 5.11068 5.11888 5.22244 5.27788 5.46337 5.49118 5.51781 5.56244 5.60934 5.76347 5.83381 5.97729 5.99424 6.10348 6.19363 6.22166 6.36078 6.78028 6.82199 6.99059 7.53619 7.73605 8.01151 8.43569 9.23219 9.95835 10.16115 11.42709 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.001295 C = 0.001281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.533103 B =21618.184402 C =21847.673131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.346 5.346 4 O 0.111 5.889 5 C 0.016 3.984 6 Cl 0.050 6.950 7 C -0.154 4.154 8 C -0.068 4.068 9 C 0.512 3.488 10 O -0.528 6.528 11 N -0.729 5.729 12 C 0.117 3.883 13 C -0.131 4.131 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.759 5.759 19 C -0.245 4.245 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.402 0.598 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.948 28.998 -26.757 40.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 N -0.052 5.052 4 O 0.045 5.955 5 C -0.075 4.075 6 Cl 0.079 6.921 7 C -0.159 4.159 8 C -0.108 4.108 9 C 0.297 3.703 10 O -0.404 6.404 11 N -0.381 5.381 12 C -0.006 4.006 13 C -0.169 4.169 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.375 4.375 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.958 30.547 -26.105 40.963 hybrid contribution 0.371 -0.521 0.818 1.038 sum 8.329 30.026 -25.287 40.130 Atomic orbital electron populations 1.20237 0.85134 1.04525 1.03659 1.23256 0.99122 0.87644 1.01376 1.73947 0.88448 1.22835 1.19995 1.84927 1.22165 1.20474 1.67927 1.24517 0.90895 0.85095 1.06974 1.98466 1.28183 1.68875 1.96617 1.20046 0.90131 0.96697 1.09041 1.19977 1.05219 0.89876 0.95730 1.20370 0.76952 0.82060 0.90894 1.90767 1.48781 1.54792 1.46033 1.46007 1.71093 1.11466 1.09581 1.21463 1.02089 0.94937 0.82083 1.21827 1.02209 0.93918 0.98897 1.21519 1.02164 0.96803 0.95003 1.21489 1.01607 0.94596 0.97436 1.21783 1.01548 0.97517 0.96034 1.20635 0.97864 0.91272 0.87325 1.42746 1.85173 1.10686 1.01803 1.19093 1.38574 0.86194 0.93605 0.89269 1.24683 1.01648 0.96031 0.96921 1.69704 1.54567 1.14609 1.19472 0.86523 0.78069 0.80667 0.83132 1.21081 1.21704 1.20346 0.89579 0.89784 0.89885 0.86624 0.86992 0.76381 0.91314 0.91319 0.91161 0.91170 0.91662 0.91664 0.91878 0.91896 0.92150 0.92134 0.95707 0.95771 0.80718 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.39 36.00 0.37 -0.01 16 2 C 0.04 0.37 7.32 -82.13 -0.60 -0.24 16 3 N -0.35 -3.49 12.07 33.44 0.40 -3.09 16 4 O 0.11 1.08 11.20 17.12 0.19 1.27 16 5 C 0.02 0.13 8.12 29.82 0.24 0.37 16 6 Cl 0.05 0.33 29.23 -51.86 -1.52 -1.19 16 7 C -0.15 -1.14 4.82 -104.38 -0.50 -1.65 16 8 C -0.07 -0.30 6.10 -29.04 -0.18 -0.48 16 9 C 0.51 3.84 7.82 -10.99 -0.09 3.76 16 10 O -0.53 -6.48 16.03 5.55 0.09 -6.40 16 11 N -0.73 -4.01 5.56 -60.29 -0.33 -4.35 16 12 C 0.12 0.83 5.67 -4.04 -0.02 0.81 16 13 C -0.13 -0.82 5.33 -26.73 -0.14 -0.96 16 14 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 15 C -0.11 -1.22 5.21 -26.73 -0.14 -1.36 16 16 C -0.13 -1.92 5.33 -26.73 -0.14 -2.06 16 17 C 0.16 3.02 6.26 -4.04 -0.03 3.00 16 18 N -0.76 -18.53 5.41 -59.91 -0.32 -18.85 16 19 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 20 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 22 N -0.94 -29.73 13.97 55.49 0.78 -28.96 16 23 Si 0.89 22.41 27.74 -169.99 -4.71 17.70 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.40 0.97 8.47 -40.82 -0.35 0.63 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 46 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -36.46 404.29 -8.30 -44.76 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.35 Total: 0.24 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.62 Total: -7.24 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.52 Total: -55.25 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: 0.28 Total: -5.12 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.70 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.52 Total: -1.19 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.46 -8.30 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179816272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.172 kcal (2) G-P(sol) polarization free energy of solvation -36.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds