Wall clock time and date at job start Wed Apr 1 2020 01:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30213 * 126.79305 * 2 1 4 4 O 1.20923 * 111.64864 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.55027 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 126.79752 * 179.97438 * 5 4 3 7 7 C 1.35676 * 106.40782 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.01454 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47425 * 90.01905 * 8 7 5 10 10 O 1.21289 * 119.99917 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99940 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99535 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46599 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47075 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47453 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47453 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47075 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.46721 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99897 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00191 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00456 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00458 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99556 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47297 * 89.99763 * 23 21 19 25 25 H 1.48499 * 109.47159 * 209.99769 * 23 21 19 26 26 H 1.48503 * 109.47136 * 329.99771 * 23 21 19 27 27 H 1.08997 * 109.47781 * 90.01477 * 1 2 3 28 28 H 1.09000 * 109.47426 * 210.02529 * 1 2 3 29 29 H 1.09005 * 109.46928 * 330.01776 * 1 2 3 30 30 H 1.09002 * 109.47001 * 210.02490 * 8 7 5 31 31 H 1.09007 * 109.46954 * 330.02154 * 8 7 5 32 32 H 0.96998 * 120.00432 * 0.02562 * 11 9 8 33 33 H 1.08997 * 109.46852 * 299.99594 * 12 11 9 34 34 H 1.08990 * 109.47424 * 60.00236 * 12 11 9 35 35 H 1.08997 * 109.47190 * 299.99390 * 13 12 11 36 36 H 1.09007 * 109.47279 * 59.99794 * 13 12 11 37 37 H 1.09002 * 109.47255 * 300.00022 * 14 13 12 38 38 H 1.08999 * 109.47179 * 59.99606 * 14 13 12 39 39 H 1.09005 * 109.47408 * 300.00244 * 15 14 13 40 40 H 1.09007 * 109.47087 * 59.99927 * 15 14 13 41 41 H 1.08997 * 109.46815 * 299.99870 * 16 15 14 42 42 H 1.08994 * 109.46738 * 59.99768 * 16 15 14 43 43 H 1.08997 * 109.47190 * 299.99637 * 17 16 15 44 44 H 1.08999 * 109.47438 * 59.99765 * 17 16 15 45 45 H 0.96999 * 120.00744 * 359.97438 * 18 17 16 46 46 H 0.96996 * 120.00128 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 0.0005 5 6 3.6036 -0.6054 0.0004 6 17 5.1011 -1.4837 0.0003 7 6 2.3530 -1.1315 0.0003 8 6 1.9578 -2.5858 -0.0005 9 6 1.8259 -3.0712 1.4201 10 8 2.0319 -2.3109 2.3424 11 7 1.4789 -4.3502 1.6656 12 6 1.3500 -4.8219 3.0467 13 6 0.9490 -6.2984 3.0458 14 6 0.8150 -6.7913 4.4881 15 6 0.4134 -8.2676 4.4874 16 6 0.2800 -8.7606 5.9296 17 6 -0.1210 -10.2372 5.9288 18 7 -0.2481 -10.7093 7.3097 19 6 -0.6013 -12.0086 7.5593 20 1 -0.7859 -12.6854 6.7380 21 6 -0.7212 -12.4563 8.8678 22 7 -1.0602 -13.7053 9.1076 23 14 -0.4013 -11.2860 10.2882 24 1 -1.6676 -10.6088 10.6664 25 1 0.1181 -12.0495 11.4512 26 1 0.5998 -10.2695 9.8763 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5136 30 1 1.0039 -2.7028 -0.5146 31 1 2.7216 -3.1695 -0.5144 32 1 1.3145 -4.9583 0.9281 33 1 2.3037 -4.7043 3.5612 34 1 0.5858 -4.2385 3.5601 35 1 -0.0048 -6.4155 2.5315 36 1 1.7129 -6.8822 2.5322 37 1 1.7690 -6.6742 5.0022 38 1 0.0514 -6.2076 5.0021 39 1 -0.5408 -8.3843 3.9734 40 1 1.1768 -8.8516 3.9732 41 1 1.2344 -8.6440 6.4431 42 1 -0.4831 -8.1767 6.4440 43 1 -1.0752 -10.3542 5.4152 44 1 0.6424 -10.8208 5.4144 45 1 -0.0820 -10.1017 8.0474 46 1 -1.1444 -14.0179 10.0219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179816272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:56 Heat of formation + Delta-G solvation = -16.409492 kcal Electronic energy + Delta-G solvation = -25697.465011 eV Core-core repulsion = 21650.096770 eV Total energy + Delta-G solvation = -4047.368242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.17268 -40.76117 -38.32164 -37.97999 -36.91860 -36.34677 -35.29699 -33.76587 -33.46825 -31.94002 -30.23175 -29.62139 -28.16986 -25.57710 -23.82506 -23.10243 -22.58952 -22.23024 -22.04769 -21.17841 -19.61107 -19.06062 -18.86427 -17.87625 -17.15867 -17.05942 -16.65168 -16.57787 -16.13004 -15.79248 -15.47992 -14.89839 -14.84717 -14.74574 -14.27593 -14.22277 -14.11191 -14.08478 -13.68705 -13.50593 -13.44982 -13.32442 -13.20896 -13.02654 -12.87236 -12.62861 -12.44901 -12.07288 -11.98611 -11.87967 -11.84595 -11.78546 -11.53075 -11.31853 -11.22095 -10.97295 -10.88986 -10.31492 -10.08149 -9.30796 -8.04563 -5.38244 -0.06088 0.10168 0.93804 1.37176 1.40820 1.48460 1.61782 2.23196 2.47431 2.50266 2.97039 3.26809 3.43667 3.58259 3.72399 3.74025 3.92162 4.01851 4.04870 4.25922 4.26708 4.33201 4.40599 4.55609 4.62181 4.64035 4.64306 4.66819 4.72177 4.80095 4.87689 4.99686 5.01814 5.07112 5.12829 5.17931 5.30236 5.36342 5.47657 5.54812 5.57739 5.74084 6.20094 6.57291 6.94282 7.06768 7.26841 7.83902 8.02852 9.16994 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.001295 C = 0.001281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.533103 B =21618.184402 C =21847.673131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.040 3.960 3 N -0.377 5.377 4 O 0.090 5.910 5 C 0.003 3.997 6 Cl 0.061 6.939 7 C -0.156 4.156 8 C -0.063 4.063 9 C 0.511 3.489 10 O -0.582 6.582 11 N -0.714 5.714 12 C 0.121 3.879 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.106 4.106 16 C -0.121 4.121 17 C 0.150 3.850 18 N -0.763 5.763 19 C -0.242 4.242 20 H 0.055 0.945 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.959 3.041 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.252 1.252 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.420 0.580 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.366 0.634 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 30.065 -27.964 41.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 N -0.087 5.087 4 O 0.027 5.973 5 C -0.087 4.087 6 Cl 0.089 6.911 7 C -0.161 4.161 8 C -0.103 4.103 9 C 0.298 3.702 10 O -0.462 6.462 11 N -0.367 5.367 12 C -0.003 4.003 13 C -0.156 4.156 14 C -0.152 4.152 15 C -0.144 4.144 16 C -0.159 4.159 17 C 0.024 3.976 18 N -0.409 5.409 19 C -0.372 4.372 20 H 0.073 0.927 21 C -0.256 4.256 22 N -0.634 5.634 23 Si 0.785 3.215 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.176 1.176 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.258 0.742 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.199 0.801 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.914 31.614 -27.383 42.567 hybrid contribution 0.374 -0.944 1.104 1.500 sum 8.289 30.670 -26.279 41.231 Atomic orbital electron populations 1.20398 0.83096 1.04800 1.05282 1.23872 1.00509 0.87502 0.99963 1.73936 0.88852 1.24139 1.21770 1.84872 1.22280 1.21383 1.68721 1.24840 0.91866 0.84866 1.07155 1.98462 1.27637 1.68424 1.96577 1.20450 0.89535 0.98013 1.08073 1.20146 1.07957 0.88068 0.94100 1.20859 0.75827 0.81987 0.91519 1.90754 1.51343 1.56264 1.47854 1.45868 1.69958 1.11270 1.09632 1.21310 1.00866 0.95370 0.82746 1.21699 1.03320 0.93089 0.97488 1.21456 1.01880 0.95223 0.96664 1.21425 1.02310 0.95918 0.94721 1.21709 1.01363 0.93979 0.98871 1.20877 0.97708 0.94393 0.84649 1.42807 1.84907 1.09043 1.04141 1.19097 1.37595 0.87733 0.92825 0.92681 1.25564 1.02107 0.97910 1.00063 1.69889 1.56430 1.17024 1.20077 0.85355 0.78680 0.78674 0.78746 1.20255 1.22028 1.17648 0.87162 0.88692 0.90383 0.82975 0.84521 0.74220 0.92901 0.92600 0.89779 0.90010 0.92002 0.91828 0.91193 0.91354 0.92143 0.91929 0.95881 0.96054 0.80119 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.39 71.23 0.74 0.09 16 2 C 0.04 0.63 7.32 43.54 0.32 0.94 16 3 N -0.38 -7.76 12.07 -49.42 -0.60 -8.35 16 4 O 0.09 1.82 11.20 71.44 0.80 2.62 16 5 C 0.00 0.05 8.12 67.23 0.55 0.59 16 6 Cl 0.06 0.75 29.23 -2.72 -0.08 0.67 16 7 C -0.16 -2.11 4.82 -19.71 -0.10 -2.20 16 8 C -0.06 -0.38 6.10 29.10 0.18 -0.20 16 9 C 0.51 6.62 7.82 87.66 0.69 7.31 16 10 O -0.58 -13.96 16.03 -3.06 -0.05 -14.01 16 11 N -0.71 -5.87 5.56 -463.05 -2.57 -8.44 16 12 C 0.12 1.47 5.67 86.38 0.49 1.96 16 13 C -0.12 -1.11 5.33 30.60 0.16 -0.95 16 14 C -0.11 -1.66 5.21 30.59 0.16 -1.50 16 15 C -0.11 -1.98 5.21 30.59 0.16 -1.82 16 16 C -0.12 -3.28 5.33 30.60 0.16 -3.11 16 17 C 0.15 5.61 6.26 86.38 0.54 6.15 16 18 N -0.76 -36.50 5.41 -343.45 -1.86 -38.36 16 19 C -0.24 -14.15 10.47 84.03 0.88 -13.27 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 22 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 23 Si 0.96 45.89 27.74 68.60 1.90 47.79 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.25 -10.88 6.52 99.48 0.65 -10.23 16 27 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.14 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.42 0.38 8.47 -92.71 -0.79 -0.41 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.37 16.56 5.53 -92.71 -0.51 16.04 16 46 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -81.79 404.29 2.89 -78.90 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -0.36 Total: 12.06 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.40 Total: -9.42 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -4.72 Total: -118.61 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.75 Total: -11.40 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -81.79 2.89 -78.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179816272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.495 kcal (2) G-P(sol) polarization free energy of solvation -81.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds