Wall clock time and date at job start Wed Apr 1 2020 01:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 C 1.53006 * 109.46937 * 240.00324 * 2 1 3 5 5 O 1.45196 * 109.47572 * 120.00294 * 2 1 3 6 6 C 1.34644 * 116.99750 * 59.99709 * 5 2 1 7 7 O 1.21503 * 119.99901 * 359.72883 * 6 5 2 8 8 N 1.34777 * 119.99831 * 179.97438 * 6 5 2 9 9 C 1.46496 * 119.99875 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47457 * 325.00418 * 9 8 6 11 11 C 1.50704 * 109.46886 * 85.00502 * 9 8 6 12 12 H 1.07996 * 119.99840 * 239.99853 * 11 9 8 13 13 C 1.37879 * 119.99877 * 59.99745 * 11 9 8 14 14 N 1.31511 * 120.00286 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99680 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47467 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47020 * 120.00104 * 15 13 11 18 18 H 1.48508 * 109.46980 * 240.00008 * 15 13 11 19 19 C 1.50699 * 109.46982 * 205.00016 * 9 8 6 20 20 O 1.21275 * 120.00316 * 0.02562 * 19 9 8 21 21 N 1.34783 * 119.99797 * 180.02562 * 19 9 8 22 22 C 1.46505 * 119.99612 * 180.02562 * 21 19 9 23 23 C 1.53006 * 109.46672 * 179.97438 * 22 21 19 24 24 H 1.09004 * 110.46257 * 59.30000 * 23 22 21 25 25 C 1.54091 * 110.51818 * 181.93055 * 23 22 21 26 26 N 1.47409 * 103.62109 * 118.59748 * 25 23 22 27 27 C 1.34006 * 108.91649 * 0.10776 * 26 25 23 28 28 O 1.21510 * 123.07528 * 179.88778 * 27 26 25 29 29 O 1.33775 * 113.84934 * 359.92531 * 27 26 25 30 30 H 1.09007 * 109.47040 * 299.99803 * 1 2 3 31 31 H 1.08994 * 109.47761 * 59.99432 * 1 2 3 32 32 H 1.09005 * 109.47416 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47592 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46949 * 300.00360 * 3 2 1 35 35 H 1.08999 * 109.47084 * 60.00407 * 3 2 1 36 36 H 1.08996 * 109.47190 * 300.00101 * 4 2 1 37 37 H 1.09003 * 109.47272 * 59.99639 * 4 2 1 38 38 H 1.08996 * 109.47211 * 180.02562 * 4 2 1 39 39 H 0.97004 * 119.99528 * 0.02562 * 8 6 5 40 40 H 0.97001 * 119.99989 * 179.97438 * 14 13 11 41 41 H 0.96999 * 120.00137 * 359.97438 * 21 19 9 42 42 H 1.08994 * 109.47204 * 299.99994 * 22 21 19 43 43 H 1.08997 * 109.47180 * 59.99939 * 22 21 19 44 44 H 1.08998 * 110.56057 * 237.20546 * 25 23 22 45 45 H 1.08995 * 110.56640 * 0.06006 * 25 23 22 46 46 H 0.96997 * 125.52939 * 180.08755 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9471 -2.5081 0.5062 8 7 2.0681 -2.6659 2.4164 9 6 1.6740 -4.0670 2.5829 10 1 0.6647 -4.2089 2.1968 11 6 2.6306 -4.9512 1.8252 12 1 2.2646 -5.5912 1.0360 13 6 3.9731 -4.9431 2.1395 14 7 4.4189 -4.1634 3.1001 15 14 5.1589 -6.0387 1.1998 16 1 4.4123 -6.8121 0.1752 17 1 6.1866 -5.1989 0.5336 18 1 5.8206 -6.9756 2.1431 19 6 1.7078 -4.4279 4.0456 20 8 2.0288 -3.5965 4.8681 21 7 1.3810 -5.6747 4.4398 22 6 1.4133 -6.0253 5.8619 23 6 1.0018 -7.4887 6.0357 24 1 1.6769 -8.1426 5.4836 25 6 0.9808 -7.8702 7.5285 26 7 -0.4240 -8.2451 7.7713 27 6 -1.1125 -8.1130 6.6293 28 8 -2.2992 -8.3576 6.5384 29 8 -0.3736 -7.6879 5.5983 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6765 -0.2074 -2.1393 38 1 3.1299 -0.7216 -1.2492 39 1 2.6278 -2.2369 3.0826 40 1 5.3633 -4.1580 3.3214 41 1 1.1238 -6.3395 3.7820 42 1 2.4224 -5.8829 6.2484 43 1 0.7208 -5.3860 6.4095 44 1 1.6427 -8.7155 7.7169 45 1 1.2625 -7.0171 8.1457 46 1 -0.7901 -8.5397 8.6198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180784368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:26 Heat of formation + Delta-G solvation = -191.228784 kcal Electronic energy + Delta-G solvation = -31208.568193 eV Core-core repulsion = 26712.910054 eV Total energy + Delta-G solvation = -4495.658140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66786 -39.83365 -38.69406 -37.37464 -36.36394 -34.87176 -34.25291 -33.81894 -33.42122 -31.85819 -30.49877 -27.91840 -27.08135 -26.97581 -25.54624 -23.75219 -22.86748 -22.15670 -21.30697 -19.58004 -19.18070 -18.30157 -17.64398 -17.19969 -16.82411 -16.68952 -15.86811 -15.39659 -15.28340 -15.19303 -15.03104 -14.82321 -14.52308 -14.08683 -13.88105 -13.78555 -13.67438 -13.51016 -13.07380 -12.80810 -12.67427 -12.36655 -12.20524 -12.09298 -11.85828 -11.71062 -11.48802 -11.33658 -11.15414 -11.07899 -10.79830 -10.77430 -10.75274 -10.72266 -10.25736 -10.02003 -9.67610 -9.61797 -9.23432 -8.97678 -8.54435 -8.32615 -7.71146 -6.29935 -4.44587 2.52739 2.64280 3.06133 3.16453 3.24069 3.28677 3.33081 3.68163 3.89331 3.99286 4.23608 4.24509 4.44219 4.61965 4.95046 4.96328 5.11242 5.12459 5.14898 5.24716 5.29212 5.41694 5.72828 5.74063 5.79884 5.83919 5.97374 6.04515 6.15201 6.24881 6.27613 6.30383 6.55459 6.61947 6.70102 6.80151 7.10406 7.20508 7.31595 7.61595 7.66674 7.85082 7.95654 8.35800 8.60436 8.84524 9.25254 9.34441 9.61804 10.72644 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003126 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.420070 B = 8954.297344 C =10317.629349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.374 6.374 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.661 5.661 9 C 0.267 3.733 10 H 0.071 0.929 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.078 3.922 14 N -0.859 5.859 15 Si 0.899 3.101 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.547 3.453 20 O -0.553 6.553 21 N -0.728 5.728 22 C 0.122 3.878 23 C 0.057 3.943 24 H 0.126 0.874 25 C 0.073 3.927 26 N -0.739 5.739 27 C 0.645 3.355 28 O -0.528 6.528 29 O -0.315 6.315 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.406 0.594 40 H 0.267 0.733 41 H 0.405 0.595 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 -1.490 5.544 6.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.290 6.290 6 C 0.398 3.602 7 O -0.481 6.481 8 N -0.318 5.318 9 C 0.163 3.837 10 H 0.089 0.911 11 C -0.574 4.574 12 H 0.092 0.908 13 C -0.130 4.130 14 N -0.493 5.493 15 Si 0.726 3.274 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.209 1.209 19 C 0.335 3.665 20 O -0.430 6.430 21 N -0.382 5.382 22 C -0.003 4.003 23 C 0.001 3.999 24 H 0.144 0.856 25 C -0.052 4.052 26 N -0.412 5.412 27 C 0.398 3.602 28 O -0.413 6.413 29 O -0.225 6.225 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.242 0.758 40 H 0.077 0.923 41 H 0.240 0.760 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.470 -1.042 5.353 5.987 hybrid contribution 1.145 -0.815 -0.012 1.405 sum -1.325 -1.857 5.342 5.809 Atomic orbital electron populations 1.22500 0.94684 1.05151 1.01450 1.21807 0.93892 0.91181 0.83236 1.21823 1.02053 0.93376 1.02327 1.22486 1.01371 1.03916 0.96021 1.86303 1.72227 1.25170 1.45253 1.18046 0.79482 0.79517 0.83168 1.90762 1.43030 1.70405 1.43934 1.45067 1.52520 1.12141 1.22094 1.18269 0.97437 0.78993 0.89043 0.91127 1.21254 0.91998 1.24298 1.19888 0.90846 1.25115 0.98545 0.94989 0.94356 1.69948 1.15355 1.36250 1.27751 0.86426 0.80759 0.80265 0.79976 1.19344 1.20838 1.20878 1.21080 0.73147 0.80579 0.91683 1.90526 1.47622 1.49578 1.55323 1.45502 1.72356 1.14188 1.06173 1.21448 1.02175 0.90804 0.85840 1.24271 0.81418 0.99848 0.94372 0.85592 1.22855 0.83868 1.02799 0.95670 1.46030 1.10217 1.72230 1.12771 1.18609 0.85485 0.76390 0.79762 1.91071 1.11129 1.55333 1.83748 1.87392 1.21947 1.79441 1.33671 0.92677 0.92040 0.89050 0.91764 0.90878 0.91851 0.88890 0.92160 0.92528 0.75756 0.92302 0.76014 0.89395 0.91405 0.88378 0.88284 0.72339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.37 37.15 0.31 -2.51 16 2 C 0.14 2.28 1.13 -90.62 -0.10 2.18 16 3 C -0.14 -1.80 8.85 37.16 0.33 -1.47 16 4 C -0.18 -2.99 8.37 37.16 0.31 -2.68 16 5 O -0.37 -7.79 9.94 -40.34 -0.40 -8.19 16 6 C 0.65 15.04 8.01 54.06 0.43 15.48 16 7 O -0.59 -14.25 11.54 -19.27 -0.22 -14.48 16 8 N -0.66 -15.95 4.36 -61.02 -0.27 -16.21 16 9 C 0.27 6.32 2.57 -70.24 -0.18 6.14 16 10 H 0.07 1.67 7.57 -51.93 -0.39 1.28 16 11 C -0.54 -13.24 8.66 -34.44 -0.30 -13.54 16 12 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 13 C 0.08 1.92 5.23 -17.82 -0.09 1.83 16 14 N -0.86 -22.02 11.59 55.43 0.64 -21.38 16 15 Si 0.90 19.61 29.54 -169.99 -5.02 14.58 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.55 12.14 6.00 -10.98 -0.07 12.07 16 20 O -0.55 -13.54 15.79 5.56 0.09 -13.45 16 21 N -0.73 -12.93 5.41 -60.29 -0.33 -13.26 16 22 C 0.12 1.67 5.23 -4.04 -0.02 1.65 16 23 C 0.06 0.58 3.91 -26.16 -0.10 0.48 16 24 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 25 C 0.07 0.49 7.73 -2.98 -0.02 0.47 16 26 N -0.74 -6.44 6.41 -64.51 -0.41 -6.85 16 27 C 0.64 8.89 9.16 53.71 0.49 9.38 16 28 O -0.53 -9.39 18.04 -19.12 -0.34 -9.73 16 29 O -0.31 -4.35 10.74 -37.84 -0.41 -4.76 16 30 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.68 5.87 -51.93 -0.30 1.38 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.82 5.89 -51.93 -0.31 1.52 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.41 10.18 7.58 -40.82 -0.31 9.87 16 40 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.41 6.78 8.36 -40.82 -0.34 6.44 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.54 7.73 -51.93 -0.40 0.13 16 46 H 0.43 2.71 8.96 -40.82 -0.37 2.34 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -33.59 385.54 -6.49 -40.08 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -6.62 Total: 18.37 kcal Atomic # 6 Polarization: 28.49 SS G_CDS: 0.99 Total: 29.48 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.36 Total: -57.70 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -1.29 Total: -50.61 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.59 -6.49 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180784368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.150 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds