Wall clock time and date at job start Wed Apr 1 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 C 1.53006 * 109.46937 * 240.00324 * 2 1 3 5 5 O 1.45196 * 109.47572 * 120.00294 * 2 1 3 6 6 C 1.34644 * 116.99750 * 59.99709 * 5 2 1 7 7 O 1.21503 * 119.99901 * 359.72883 * 6 5 2 8 8 N 1.34777 * 119.99831 * 179.97438 * 6 5 2 9 9 C 1.46496 * 119.99875 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47457 * 325.00418 * 9 8 6 11 11 C 1.50704 * 109.46886 * 85.00502 * 9 8 6 12 12 H 1.07996 * 119.99840 * 239.99853 * 11 9 8 13 13 C 1.37879 * 119.99877 * 59.99745 * 11 9 8 14 14 N 1.31511 * 120.00286 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99680 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47467 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47020 * 120.00104 * 15 13 11 18 18 H 1.48508 * 109.46980 * 240.00008 * 15 13 11 19 19 C 1.50699 * 109.46982 * 205.00016 * 9 8 6 20 20 O 1.21275 * 120.00316 * 0.02562 * 19 9 8 21 21 N 1.34783 * 119.99797 * 180.02562 * 19 9 8 22 22 C 1.46505 * 119.99612 * 180.02562 * 21 19 9 23 23 C 1.53006 * 109.46672 * 179.97438 * 22 21 19 24 24 H 1.09004 * 110.46257 * 59.30000 * 23 22 21 25 25 C 1.54091 * 110.51818 * 181.93055 * 23 22 21 26 26 N 1.47409 * 103.62109 * 118.59748 * 25 23 22 27 27 C 1.34006 * 108.91649 * 0.10776 * 26 25 23 28 28 O 1.21510 * 123.07528 * 179.88778 * 27 26 25 29 29 O 1.33775 * 113.84934 * 359.92531 * 27 26 25 30 30 H 1.09007 * 109.47040 * 299.99803 * 1 2 3 31 31 H 1.08994 * 109.47761 * 59.99432 * 1 2 3 32 32 H 1.09005 * 109.47416 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47592 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46949 * 300.00360 * 3 2 1 35 35 H 1.08999 * 109.47084 * 60.00407 * 3 2 1 36 36 H 1.08996 * 109.47190 * 300.00101 * 4 2 1 37 37 H 1.09003 * 109.47272 * 59.99639 * 4 2 1 38 38 H 1.08996 * 109.47211 * 180.02562 * 4 2 1 39 39 H 0.97004 * 119.99528 * 0.02562 * 8 6 5 40 40 H 0.97001 * 119.99989 * 179.97438 * 14 13 11 41 41 H 0.96999 * 120.00137 * 359.97438 * 21 19 9 42 42 H 1.08994 * 109.47204 * 299.99994 * 22 21 19 43 43 H 1.08997 * 109.47180 * 59.99939 * 22 21 19 44 44 H 1.08998 * 110.56057 * 237.20546 * 25 23 22 45 45 H 1.08995 * 110.56640 * 0.06006 * 25 23 22 46 46 H 0.96997 * 125.52939 * 180.08755 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9471 -2.5081 0.5062 8 7 2.0681 -2.6659 2.4164 9 6 1.6740 -4.0670 2.5829 10 1 0.6647 -4.2089 2.1968 11 6 2.6306 -4.9512 1.8252 12 1 2.2646 -5.5912 1.0360 13 6 3.9731 -4.9431 2.1395 14 7 4.4189 -4.1634 3.1001 15 14 5.1589 -6.0387 1.1998 16 1 4.4123 -6.8121 0.1752 17 1 6.1866 -5.1989 0.5336 18 1 5.8206 -6.9756 2.1431 19 6 1.7078 -4.4279 4.0456 20 8 2.0288 -3.5965 4.8681 21 7 1.3810 -5.6747 4.4398 22 6 1.4133 -6.0253 5.8619 23 6 1.0018 -7.4887 6.0357 24 1 1.6769 -8.1426 5.4836 25 6 0.9808 -7.8702 7.5285 26 7 -0.4240 -8.2451 7.7713 27 6 -1.1125 -8.1130 6.6293 28 8 -2.2992 -8.3576 6.5384 29 8 -0.3736 -7.6879 5.5983 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6765 -0.2074 -2.1393 38 1 3.1299 -0.7216 -1.2492 39 1 2.6278 -2.2369 3.0826 40 1 5.3633 -4.1580 3.3214 41 1 1.1238 -6.3395 3.7820 42 1 2.4224 -5.8829 6.2484 43 1 0.7208 -5.3860 6.4095 44 1 1.6427 -8.7155 7.7169 45 1 1.2625 -7.0171 8.1457 46 1 -0.7901 -8.5397 8.6198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180784368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:25 Heat of formation + Delta-G solvation = -219.955215 kcal Electronic energy + Delta-G solvation = -31209.813865 eV Core-core repulsion = 26712.910054 eV Total energy + Delta-G solvation = -4496.903811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.61159 -41.51789 -40.34303 -38.54340 -37.97891 -35.89087 -35.70950 -35.50868 -34.92566 -33.70270 -31.68790 -29.59792 -28.27517 -28.21485 -26.73202 -25.43998 -23.84814 -23.22968 -22.74985 -21.28540 -20.79988 -19.40106 -19.07280 -18.65863 -18.26667 -17.76873 -17.37675 -16.98515 -16.82035 -16.73538 -16.63083 -16.09782 -15.60595 -15.54396 -15.25575 -15.15863 -15.06452 -14.49698 -14.41766 -14.25216 -13.97745 -13.81133 -13.31053 -13.23598 -13.18494 -13.10125 -12.87714 -12.76607 -12.75485 -12.68146 -12.37558 -12.18874 -12.12610 -11.93274 -11.78162 -11.75485 -11.21644 -11.03403 -10.77304 -10.41551 -10.32844 -9.84463 -9.58429 -8.20053 -6.40930 1.36444 1.45461 1.51482 1.55688 1.59918 1.70597 2.11767 2.15622 2.41053 2.49781 2.63162 3.08953 3.29354 3.47197 3.76109 3.84832 3.87968 3.90391 4.05260 4.24259 4.41574 4.50337 4.59674 4.61352 4.67763 4.68719 4.75629 4.81793 4.84682 4.86966 4.93392 4.94859 5.14945 5.38518 5.43565 5.62128 5.67787 5.72906 5.82123 5.82713 5.98723 6.21643 6.59849 6.81976 6.96412 7.04326 7.33385 7.63419 7.79222 8.81423 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003126 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.420070 B = 8954.297344 C =10317.629349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.118 3.882 3 C -0.131 4.131 4 C -0.176 4.176 5 O -0.383 6.383 6 C 0.643 3.357 7 O -0.604 6.604 8 N -0.667 5.667 9 C 0.261 3.739 10 H 0.059 0.941 11 C -0.545 4.545 12 H 0.064 0.936 13 C 0.045 3.955 14 N -0.878 5.878 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.291 1.291 18 H -0.268 1.268 19 C 0.546 3.454 20 O -0.581 6.581 21 N -0.719 5.719 22 C 0.119 3.881 23 C 0.059 3.941 24 H 0.149 0.851 25 C 0.081 3.919 26 N -0.717 5.717 27 C 0.638 3.362 28 O -0.581 6.581 29 O -0.340 6.340 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.400 0.600 40 H 0.267 0.733 41 H 0.409 0.591 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -1.620 5.951 6.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.081 3.919 3 C -0.188 4.188 4 C -0.233 4.233 5 O -0.298 6.298 6 C 0.395 3.605 7 O -0.497 6.497 8 N -0.324 5.324 9 C 0.156 3.844 10 H 0.077 0.923 11 C -0.584 4.584 12 H 0.082 0.918 13 C -0.160 4.160 14 N -0.513 5.513 15 Si 0.781 3.219 16 H -0.194 1.194 17 H -0.217 1.217 18 H -0.193 1.193 19 C 0.334 3.666 20 O -0.461 6.461 21 N -0.372 5.372 22 C -0.005 4.005 23 C 0.003 3.997 24 H 0.166 0.834 25 C -0.043 4.043 26 N -0.390 5.390 27 C 0.391 3.609 28 O -0.470 6.470 29 O -0.249 6.249 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.235 0.765 40 H 0.076 0.924 41 H 0.245 0.755 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.158 0.842 45 H 0.137 0.863 46 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -1.277 -1.200 5.794 6.053 hybrid contribution 0.768 -0.693 -0.193 1.052 sum -0.509 -1.893 5.601 5.934 Atomic orbital electron populations 1.22435 0.93902 1.03511 1.03376 1.22413 0.94846 0.92821 0.81801 1.21853 1.02037 0.90603 1.04326 1.22430 1.00994 1.02248 0.97658 1.86309 1.72327 1.23785 1.47390 1.18149 0.79241 0.80342 0.82733 1.90755 1.43568 1.71103 1.44260 1.45081 1.52652 1.12398 1.22240 1.18315 0.96598 0.78986 0.90473 0.92300 1.21296 0.92642 1.24524 1.19930 0.91798 1.25652 0.99517 0.95944 0.94916 1.70051 1.15454 1.37133 1.28619 0.85559 0.78607 0.78806 0.78963 1.19437 1.21745 1.19338 1.20769 0.73367 0.81768 0.90735 1.90496 1.49317 1.50673 1.55619 1.45437 1.70634 1.12723 1.08390 1.21677 1.02566 0.93268 0.82943 1.24456 0.80105 0.97650 0.97456 0.83373 1.23126 0.82941 1.05274 0.92996 1.45957 1.10771 1.70475 1.11821 1.18810 0.85100 0.76289 0.80707 1.91022 1.13473 1.57770 1.84699 1.87356 1.23600 1.79392 1.34583 0.92263 0.88569 0.92382 0.91852 0.87360 0.91334 0.92502 0.88504 0.93013 0.76509 0.92379 0.75522 0.88660 0.92142 0.84191 0.86287 0.70751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.30 8.37 71.98 0.60 -4.70 16 2 C 0.12 3.83 1.13 -10.79 -0.01 3.81 16 3 C -0.13 -3.07 8.85 71.98 0.64 -2.44 16 4 C -0.18 -5.69 8.37 71.98 0.60 -5.09 16 5 O -0.38 -16.18 9.94 -55.54 -0.55 -16.73 16 6 C 0.64 30.99 8.01 129.79 1.04 32.03 16 7 O -0.60 -30.40 11.54 19.83 0.23 -30.18 16 8 N -0.67 -33.40 4.36 -577.36 -2.52 -35.92 16 9 C 0.26 12.81 2.57 43.50 0.11 12.92 16 10 H 0.06 2.95 7.57 -2.39 -0.02 2.93 16 11 C -0.55 -27.52 8.66 25.60 0.22 -27.30 16 12 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 13 C 0.05 2.25 5.23 84.66 0.44 2.69 16 14 N -0.88 -45.28 11.59 21.45 0.25 -45.03 16 15 Si 0.95 40.04 29.54 68.60 2.03 42.07 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 C 0.55 24.80 6.00 87.66 0.53 25.32 16 20 O -0.58 -29.05 15.79 -3.01 -0.05 -29.09 16 21 N -0.72 -25.67 5.41 -463.05 -2.50 -28.17 16 22 C 0.12 3.13 5.23 86.38 0.45 3.58 16 23 C 0.06 1.07 3.91 30.97 0.12 1.19 16 24 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 25 C 0.08 0.77 7.73 86.57 0.67 1.44 16 26 N -0.72 -10.77 6.41 -589.71 -3.78 -14.55 16 27 C 0.64 17.21 9.16 129.91 1.19 18.40 16 28 O -0.58 -21.09 18.04 19.65 0.35 -20.73 16 29 O -0.34 -9.19 10.74 -47.35 -0.51 -9.70 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.17 5.87 -2.38 -0.01 2.15 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 2.27 5.89 -2.39 -0.01 2.25 16 37 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.40 20.80 7.58 -92.71 -0.70 20.10 16 40 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 41 H 0.41 13.82 8.36 -92.71 -0.77 13.05 16 42 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.12 0.79 7.73 -2.39 -0.02 0.77 16 46 H 0.45 4.45 8.96 -92.71 -0.83 3.62 16 Total: -1.00 -77.02 385.54 -1.70 -78.73 By element: Atomic # 1 Polarization: 48.71 SS G_CDS: -1.26 Total: 47.45 kcal Atomic # 6 Polarization: 55.25 SS G_CDS: 6.60 Total: 61.86 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -8.55 Total: -123.67 kcal Atomic # 8 Polarization: -105.91 SS G_CDS: -0.52 Total: -106.43 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -77.02 -1.70 -78.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180784368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.227 kcal (2) G-P(sol) polarization free energy of solvation -77.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds