Wall clock time and date at job start Wed Apr 1 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 C 1.53002 * 109.46828 * 240.00295 * 2 1 3 5 5 O 1.45191 * 109.47004 * 120.00035 * 2 1 3 6 6 C 1.34642 * 117.00207 * 60.00106 * 5 2 1 7 7 O 1.21511 * 119.99757 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00199 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00076 * 359.97438 * 8 6 5 10 10 C 1.50698 * 109.47194 * 270.00149 * 9 8 6 11 11 H 1.08001 * 119.99757 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99769 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00015 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99927 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.47072 * 90.00051 * 14 12 10 16 16 H 1.48498 * 109.47462 * 209.99738 * 14 12 10 17 17 H 1.48506 * 109.47299 * 330.00219 * 14 12 10 18 18 C 1.46501 * 119.99981 * 179.97438 * 8 6 5 19 19 C 1.50703 * 109.46934 * 90.00318 * 18 8 6 20 20 O 1.21283 * 119.99915 * 359.97438 * 19 18 8 21 21 N 1.34778 * 119.99775 * 180.02562 * 19 18 8 22 22 C 1.46502 * 119.99777 * 179.97438 * 21 19 18 23 23 H 1.08994 * 110.79717 * 328.28105 * 22 21 19 24 24 C 1.54597 * 110.73438 * 204.99820 * 22 21 19 25 25 O 1.44046 * 102.55180 * 266.81373 * 24 22 21 26 26 N 1.41463 * 107.84297 * 333.10441 * 25 24 22 27 27 C 1.34777 * 111.67558 * 18.75446 * 26 25 24 28 28 O 1.21281 * 126.24483 * 178.81469 * 27 26 25 29 29 H 1.09002 * 109.47005 * 300.00088 * 1 2 3 30 30 H 1.09001 * 109.47515 * 59.99727 * 1 2 3 31 31 H 1.09001 * 109.47450 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46717 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47585 * 299.99658 * 3 2 1 34 34 H 1.08993 * 109.47387 * 60.00364 * 3 2 1 35 35 H 1.08993 * 109.47032 * 299.99798 * 4 2 1 36 36 H 1.08999 * 109.47035 * 60.00265 * 4 2 1 37 37 H 1.09007 * 109.46751 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.46923 * 30.00019 * 9 8 6 39 39 H 1.09000 * 109.46926 * 149.99932 * 9 8 6 40 40 H 0.96999 * 120.00002 * 180.02562 * 13 12 10 41 41 H 1.08992 * 109.47331 * 330.00435 * 18 8 6 42 42 H 1.08997 * 109.47015 * 210.00045 * 18 8 6 43 43 H 0.97001 * 119.99852 * 359.97438 * 21 19 18 44 44 H 1.09004 * 110.79616 * 148.54656 * 24 22 21 45 45 H 1.08999 * 110.79235 * 25.07280 * 24 22 21 46 46 H 0.97001 * 124.16164 * 198.75156 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0680 -2.6657 2.4166 9 6 2.9141 -2.0183 3.4222 10 6 4.3636 -2.2069 3.0559 11 1 4.6282 -2.7539 2.1631 12 6 5.3520 -1.6802 3.8601 13 7 5.0297 -1.0128 4.9465 14 14 7.1488 -1.9146 3.4065 15 1 7.5933 -0.7881 2.5467 16 1 7.9712 -1.9482 4.6425 17 1 7.3106 -3.1936 2.6693 18 6 1.6739 -4.0669 2.5831 19 6 2.6983 -4.9579 1.9291 20 8 3.6624 -4.4705 1.3777 21 7 2.5426 -6.2964 1.9559 22 6 3.5381 -7.1626 1.3197 23 1 3.9827 -6.6707 0.4546 24 6 2.9086 -8.5157 0.9164 25 8 3.1890 -9.3448 2.0604 26 7 4.3540 -8.8415 2.6854 27 6 4.6087 -7.5711 2.3143 28 8 5.5262 -6.8804 2.7042 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 2.6843 -0.9535 3.4593 39 1 2.7248 -2.4651 4.3983 40 1 5.7251 -0.6419 5.5121 41 1 0.7017 -4.2286 2.1177 42 1 1.6121 -4.3031 3.6453 43 1 1.7713 -6.6862 2.3966 44 1 3.3882 -8.9146 0.0225 45 1 1.8337 -8.4132 0.7671 46 1 4.9021 -9.3483 3.3048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184862805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:06 Heat of formation + Delta-G solvation = -119.370130 kcal Electronic energy + Delta-G solvation = -32171.609999 eV Core-core repulsion = 27679.067885 eV Total energy + Delta-G solvation = -4492.542114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95053 -40.14768 -38.88304 -37.58698 -36.75634 -34.89228 -34.33651 -33.33283 -32.36326 -31.77937 -30.28717 -28.01477 -27.05913 -27.00452 -26.44317 -23.87669 -22.92676 -21.94432 -21.14254 -20.36231 -18.79144 -18.47445 -17.28689 -17.18031 -16.91915 -16.29602 -16.07718 -15.81962 -15.62801 -15.22753 -15.13950 -14.55653 -14.48805 -14.27378 -14.04075 -13.92554 -13.76918 -13.37259 -13.23171 -12.75253 -12.22975 -12.19558 -12.11338 -11.83979 -11.75207 -11.63706 -11.48658 -11.47884 -11.21921 -11.09123 -10.87157 -10.66022 -10.57084 -10.53754 -10.01437 -9.90447 -9.77741 -9.35944 -9.33742 -9.03188 -8.89636 -8.29149 -7.84106 -5.91454 -3.91748 1.87606 2.14939 2.83878 3.03201 3.33139 3.45311 3.49943 3.63836 3.71048 3.78892 4.04668 4.26735 4.57130 4.70844 4.77050 5.03856 5.07568 5.12007 5.16400 5.29453 5.43159 5.50378 5.50788 5.62752 5.76020 5.83697 5.98290 6.03515 6.13574 6.21360 6.31460 6.33465 6.47936 6.53096 6.63252 6.73673 6.76581 7.13504 7.36699 7.46898 7.60742 7.91376 8.10012 8.26359 8.33267 8.58008 9.10577 9.29781 9.74622 11.17362 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.004513 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.106855 B = 6202.860078 C = 8268.041773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.132 3.868 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.338 6.338 6 C 0.664 3.336 7 O -0.601 6.601 8 N -0.567 5.567 9 C 0.243 3.757 10 C -0.520 4.520 11 H 0.084 0.916 12 C 0.061 3.939 13 N -0.904 5.904 14 Si 0.891 3.109 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.269 1.269 18 C 0.127 3.873 19 C 0.494 3.506 20 O -0.476 6.476 21 N -0.725 5.725 22 C 0.094 3.906 23 H 0.135 0.865 24 C 0.024 3.976 25 O -0.144 6.144 26 N -0.594 5.594 27 C 0.498 3.502 28 O -0.470 6.470 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.033 0.967 40 H 0.260 0.740 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.403 0.597 44 H 0.096 0.904 45 H 0.125 0.875 46 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -11.082 -7.950 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.095 3.905 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.252 6.252 6 C 0.420 3.580 7 O -0.495 6.495 8 N -0.303 5.303 9 C 0.124 3.876 10 C -0.559 4.559 11 H 0.102 0.898 12 C -0.140 4.140 13 N -0.544 5.544 14 Si 0.719 3.281 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.193 1.193 18 C 0.000 4.000 19 C 0.278 3.722 20 O -0.345 6.345 21 N -0.383 5.383 22 C -0.016 4.016 23 H 0.153 0.847 24 C -0.054 4.054 25 O -0.152 6.152 26 N -0.303 5.303 27 C 0.280 3.720 28 O -0.340 6.340 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.238 0.762 44 H 0.114 0.886 45 H 0.143 0.857 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.566 -10.355 -8.255 16.337 hybrid contribution 0.987 -0.611 0.234 1.184 sum -8.580 -10.966 -8.021 16.069 Atomic orbital electron populations 1.22500 0.94756 1.04699 1.01728 1.21916 0.93686 0.91709 0.83192 1.21809 1.02648 0.92892 1.02290 1.22463 1.01852 1.03222 0.96083 1.86500 1.70550 1.23605 1.44525 1.17838 0.78117 0.80584 0.81473 1.90758 1.43877 1.71066 1.43782 1.46748 1.52158 1.08706 1.22688 1.19531 0.89386 0.93594 0.85077 1.21866 0.90079 1.33843 1.10100 0.89768 1.24881 0.99093 0.95114 0.94914 1.69942 1.33125 1.37008 1.14371 0.86570 0.84891 0.78889 0.77716 1.20883 1.21532 1.19346 1.21006 0.96496 0.80798 1.01741 1.21612 0.88206 0.81651 0.80712 1.90789 1.29593 1.73430 1.40709 1.45810 1.25819 1.06050 1.60666 1.22090 0.90098 0.92007 0.97438 0.84733 1.24246 1.03460 0.88337 0.89310 1.90903 1.31968 1.49929 1.42388 1.47864 1.21711 1.13737 1.46993 1.21510 0.86401 0.80743 0.83326 1.90958 1.31651 1.54337 1.57021 0.92468 0.91924 0.89483 0.91297 0.90926 0.91622 0.89527 0.92093 0.92125 0.93569 0.94913 0.93089 0.87630 0.87340 0.76204 0.88602 0.85716 0.71284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.37 37.16 0.31 -2.36 16 2 C 0.13 2.27 1.13 -90.62 -0.10 2.16 16 3 C -0.14 -2.01 8.85 37.16 0.33 -1.68 16 4 C -0.18 -2.96 8.37 37.16 0.31 -2.65 16 5 O -0.34 -7.37 8.71 -40.33 -0.35 -7.72 16 6 C 0.66 14.52 7.70 54.05 0.42 14.94 16 7 O -0.60 -12.65 11.46 -19.28 -0.22 -12.87 16 8 N -0.57 -12.34 2.01 -182.25 -0.37 -12.71 16 9 C 0.24 6.22 5.21 -5.19 -0.03 6.20 16 10 C -0.52 -15.16 8.97 -34.44 -0.31 -15.46 16 11 H 0.08 2.61 5.50 -52.49 -0.29 2.32 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 14 Si 0.89 23.78 29.54 -169.99 -5.02 18.76 16 15 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 17 H -0.27 -7.47 7.11 56.52 0.40 -7.07 16 18 C 0.13 2.15 5.93 -5.19 -0.03 2.12 16 19 C 0.49 8.94 7.90 -10.98 -0.09 8.85 16 20 O -0.48 -11.24 13.41 5.55 0.07 -11.17 16 21 N -0.72 -9.24 5.12 -53.62 -0.27 -9.51 16 22 C 0.09 1.15 3.45 -67.73 -0.23 0.92 16 23 H 0.14 1.83 7.55 -51.93 -0.39 1.44 16 24 C 0.02 0.17 7.75 38.00 0.29 0.47 16 25 O -0.14 -1.29 12.49 -11.40 -0.14 -1.43 16 26 N -0.59 -6.35 7.31 31.49 0.23 -6.12 16 27 C 0.50 7.43 8.33 -10.48 -0.09 7.35 16 28 O -0.47 -9.79 18.03 5.56 0.10 -9.69 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.61 5.88 -51.93 -0.31 1.31 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 39 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.11 1.49 7.42 -51.93 -0.39 1.11 16 42 H 0.11 1.58 7.89 -51.93 -0.41 1.17 16 43 H 0.40 3.56 8.65 -40.82 -0.35 3.21 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.13 0.59 8.08 -51.93 -0.42 0.17 16 46 H 0.44 3.78 8.96 -40.82 -0.37 3.42 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -39.36 384.65 -5.29 -44.64 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.54 Total: 5.95 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 0.69 Total: 22.54 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.33 Total: -54.80 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.54 Total: -42.89 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.76 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.36 -5.29 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184862805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.727 kcal (2) G-P(sol) polarization free energy of solvation -39.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds