Wall clock time and date at job start Wed Apr 1 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 C 1.53002 * 109.46828 * 240.00295 * 2 1 3 5 5 O 1.45191 * 109.47004 * 120.00035 * 2 1 3 6 6 C 1.34642 * 117.00207 * 60.00106 * 5 2 1 7 7 O 1.21511 * 119.99757 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00199 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00076 * 359.97438 * 8 6 5 10 10 C 1.50698 * 109.47194 * 270.00149 * 9 8 6 11 11 H 1.08001 * 119.99757 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99769 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00015 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99927 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.47072 * 90.00051 * 14 12 10 16 16 H 1.48498 * 109.47462 * 209.99738 * 14 12 10 17 17 H 1.48506 * 109.47299 * 330.00219 * 14 12 10 18 18 C 1.46501 * 119.99981 * 179.97438 * 8 6 5 19 19 C 1.50703 * 109.46934 * 90.00318 * 18 8 6 20 20 O 1.21283 * 119.99915 * 359.97438 * 19 18 8 21 21 N 1.34778 * 119.99775 * 180.02562 * 19 18 8 22 22 C 1.46502 * 119.99777 * 179.97438 * 21 19 18 23 23 H 1.08994 * 110.79717 * 328.28105 * 22 21 19 24 24 C 1.54597 * 110.73438 * 204.99820 * 22 21 19 25 25 O 1.44046 * 102.55180 * 266.81373 * 24 22 21 26 26 N 1.41463 * 107.84297 * 333.10441 * 25 24 22 27 27 C 1.34777 * 111.67558 * 18.75446 * 26 25 24 28 28 O 1.21281 * 126.24483 * 178.81469 * 27 26 25 29 29 H 1.09002 * 109.47005 * 300.00088 * 1 2 3 30 30 H 1.09001 * 109.47515 * 59.99727 * 1 2 3 31 31 H 1.09001 * 109.47450 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46717 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47585 * 299.99658 * 3 2 1 34 34 H 1.08993 * 109.47387 * 60.00364 * 3 2 1 35 35 H 1.08993 * 109.47032 * 299.99798 * 4 2 1 36 36 H 1.08999 * 109.47035 * 60.00265 * 4 2 1 37 37 H 1.09007 * 109.46751 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.46923 * 30.00019 * 9 8 6 39 39 H 1.09000 * 109.46926 * 149.99932 * 9 8 6 40 40 H 0.96999 * 120.00002 * 180.02562 * 13 12 10 41 41 H 1.08992 * 109.47331 * 330.00435 * 18 8 6 42 42 H 1.08997 * 109.47015 * 210.00045 * 18 8 6 43 43 H 0.97001 * 119.99852 * 359.97438 * 21 19 18 44 44 H 1.09004 * 110.79616 * 148.54656 * 24 22 21 45 45 H 1.08999 * 110.79235 * 25.07280 * 24 22 21 46 46 H 0.97001 * 124.16164 * 198.75156 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0680 -2.6657 2.4166 9 6 2.9141 -2.0183 3.4222 10 6 4.3636 -2.2069 3.0559 11 1 4.6282 -2.7539 2.1631 12 6 5.3520 -1.6802 3.8601 13 7 5.0297 -1.0128 4.9465 14 14 7.1488 -1.9146 3.4065 15 1 7.5933 -0.7881 2.5467 16 1 7.9712 -1.9482 4.6425 17 1 7.3106 -3.1936 2.6693 18 6 1.6739 -4.0669 2.5831 19 6 2.6983 -4.9579 1.9291 20 8 3.6624 -4.4705 1.3777 21 7 2.5426 -6.2964 1.9559 22 6 3.5381 -7.1626 1.3197 23 1 3.9827 -6.6707 0.4546 24 6 2.9086 -8.5157 0.9164 25 8 3.1890 -9.3448 2.0604 26 7 4.3540 -8.8415 2.6854 27 6 4.6087 -7.5711 2.3143 28 8 5.5262 -6.8804 2.7042 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 2.6843 -0.9535 3.4593 39 1 2.7248 -2.4651 4.3983 40 1 5.7251 -0.6419 5.5121 41 1 0.7017 -4.2286 2.1177 42 1 1.6121 -4.3031 3.6453 43 1 1.7713 -6.6862 2.3966 44 1 3.3882 -8.9146 0.0225 45 1 1.8337 -8.4132 0.7671 46 1 4.9021 -9.3483 3.3048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184862805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:05 Heat of formation + Delta-G solvation = -151.661529 kcal Electronic energy + Delta-G solvation = -32173.010259 eV Core-core repulsion = 27679.067885 eV Total energy + Delta-G solvation = -4493.942375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05628 -41.66369 -40.27287 -38.74723 -38.26146 -36.59420 -35.63592 -34.79134 -34.48074 -32.74551 -31.48303 -29.67848 -28.28203 -28.22296 -28.15724 -24.99819 -24.73828 -23.33204 -22.34009 -21.67713 -20.24839 -19.59573 -18.88146 -18.66607 -18.28657 -18.01479 -17.61544 -17.00407 -16.72117 -16.67392 -16.64653 -16.22575 -15.80771 -15.65335 -15.34604 -15.16651 -15.01977 -14.72778 -14.59234 -14.38981 -14.11535 -13.47468 -13.34308 -13.20530 -13.16125 -13.05343 -12.85716 -12.79993 -12.75972 -12.58070 -12.49122 -12.44584 -12.23075 -11.97008 -11.92602 -11.70132 -11.23220 -10.94867 -10.85753 -10.56140 -10.30238 -10.11966 -9.60266 -8.18331 -6.23234 0.93725 1.04314 1.29236 1.31228 1.37258 1.48360 1.67034 1.92770 2.28882 2.41855 2.84535 3.09848 3.14131 3.17963 3.38817 3.85430 3.85941 3.90625 4.04408 4.12912 4.19701 4.34532 4.52500 4.55089 4.61455 4.68019 4.78463 4.78728 4.81462 4.89455 4.93377 5.14386 5.19486 5.24832 5.36353 5.42306 5.53899 5.62922 5.64252 5.82373 5.85079 6.14895 6.43982 6.51691 6.84665 6.89940 7.32249 7.41737 7.54167 8.89133 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.004513 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.106855 B = 6202.860078 C = 8268.041773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.114 3.886 3 C -0.135 4.135 4 C -0.172 4.172 5 O -0.369 6.369 6 C 0.659 3.341 7 O -0.597 6.597 8 N -0.574 5.574 9 C 0.262 3.738 10 C -0.525 4.525 11 H 0.062 0.938 12 C 0.019 3.981 13 N -0.924 5.924 14 Si 0.939 3.061 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.292 1.292 18 C 0.119 3.881 19 C 0.490 3.510 20 O -0.541 6.541 21 N -0.701 5.701 22 C 0.087 3.913 23 H 0.117 0.883 24 C 0.039 3.961 25 O -0.135 6.135 26 N -0.574 5.574 27 C 0.489 3.511 28 O -0.544 6.544 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.025 0.975 39 H 0.031 0.969 40 H 0.264 0.736 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.425 0.575 44 H 0.123 0.877 45 H 0.163 0.837 46 H 0.448 0.552 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 -12.239 -9.027 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.078 3.922 3 C -0.192 4.192 4 C -0.229 4.229 5 O -0.283 6.283 6 C 0.415 3.585 7 O -0.490 6.490 8 N -0.310 5.310 9 C 0.142 3.858 10 C -0.564 4.564 11 H 0.080 0.920 12 C -0.179 4.179 13 N -0.565 5.565 14 Si 0.767 3.233 15 H -0.198 1.198 16 H -0.200 1.200 17 H -0.218 1.218 18 C -0.007 4.007 19 C 0.276 3.724 20 O -0.415 6.415 21 N -0.360 5.360 22 C -0.023 4.023 23 H 0.135 0.865 24 C -0.038 4.038 25 O -0.143 6.143 26 N -0.281 5.281 27 C 0.273 3.727 28 O -0.419 6.419 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.156 0.844 42 H 0.151 0.849 43 H 0.265 0.735 44 H 0.141 0.859 45 H 0.180 0.820 46 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -11.789 -11.614 -9.323 18.994 hybrid contribution 1.560 -0.365 0.481 1.673 sum -10.228 -11.979 -8.842 18.064 Atomic orbital electron populations 1.22405 0.92767 1.03962 1.03530 1.22460 0.95431 0.92524 0.81823 1.21859 1.01575 0.91525 1.04230 1.22398 1.00496 1.02338 0.97678 1.86485 1.71270 1.23753 1.46811 1.17968 0.78244 0.80836 0.81494 1.90743 1.43802 1.71132 1.43359 1.46685 1.51712 1.10541 1.22108 1.19011 0.88218 0.92734 0.85854 1.22014 0.92202 1.33004 1.09178 0.91995 1.25453 1.01978 0.95294 0.95188 1.69990 1.34014 1.37663 1.14865 0.85844 0.81937 0.77772 0.77793 1.19757 1.20003 1.21807 1.21419 0.97398 0.78258 1.03620 1.21848 0.87418 0.83333 0.79818 1.90772 1.32059 1.74941 1.43703 1.45517 1.26300 1.04564 1.59654 1.22229 0.89799 0.94213 0.96064 0.86534 1.24537 1.05626 0.84329 0.89300 1.90938 1.30522 1.49750 1.43050 1.47673 1.21891 1.12551 1.45966 1.21885 0.85981 0.81457 0.83379 1.90916 1.34618 1.56623 1.59729 0.92237 0.88494 0.91395 0.93027 0.86973 0.91630 0.91882 0.88252 0.94136 0.95729 0.95109 0.92744 0.84353 0.84891 0.73550 0.85871 0.81960 0.70072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 8.37 71.98 0.60 -4.13 16 2 C 0.11 3.82 1.13 -10.79 -0.01 3.81 16 3 C -0.13 -3.73 8.85 71.98 0.64 -3.10 16 4 C -0.17 -5.60 8.37 71.98 0.60 -5.00 16 5 O -0.37 -16.46 8.71 -55.51 -0.48 -16.94 16 6 C 0.66 29.27 7.70 129.79 1.00 30.27 16 7 O -0.60 -25.08 11.46 19.81 0.23 -24.85 16 8 N -0.57 -25.44 2.01 -960.91 -1.94 -27.37 16 9 C 0.26 13.86 5.21 85.63 0.45 14.31 16 10 C -0.53 -31.72 8.97 25.60 0.23 -31.49 16 11 H 0.06 4.04 5.50 -2.91 -0.02 4.02 16 12 C 0.02 1.17 5.46 84.65 0.46 1.63 16 13 N -0.92 -56.42 13.29 21.45 0.28 -56.14 16 14 Si 0.94 50.30 29.54 68.60 2.03 52.33 16 15 H -0.27 -13.97 7.11 99.48 0.71 -13.26 16 16 H -0.27 -13.96 7.11 99.48 0.71 -13.25 16 17 H -0.29 -16.68 7.11 99.48 0.71 -15.98 16 18 C 0.12 3.94 5.93 85.63 0.51 4.45 16 19 C 0.49 17.86 7.90 87.66 0.69 18.55 16 20 O -0.54 -26.68 13.41 -3.04 -0.04 -26.72 16 21 N -0.70 -16.98 5.12 -441.93 -2.26 -19.24 16 22 C 0.09 2.06 3.45 45.12 0.16 2.21 16 23 H 0.12 3.25 7.55 -2.39 -0.02 3.24 16 24 C 0.04 0.42 7.75 72.53 0.56 0.98 16 25 O -0.13 -1.93 12.49 -38.48 -0.48 -2.41 16 26 N -0.57 -11.42 7.31 -172.67 -1.26 -12.69 16 27 C 0.49 14.72 8.33 87.99 0.73 15.46 16 28 O -0.54 -23.90 18.03 -3.03 -0.05 -23.95 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.17 5.88 -2.39 -0.01 2.16 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.35 5.88 -2.39 -0.01 2.34 16 36 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.02 1.40 7.37 -2.39 -0.02 1.38 16 39 H 0.03 1.63 7.89 -2.39 -0.02 1.61 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.14 3.63 7.42 -2.39 -0.02 3.61 16 42 H 0.13 3.69 7.89 -2.39 -0.02 3.67 16 43 H 0.43 6.27 8.65 -92.71 -0.80 5.47 16 44 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.16 0.65 8.08 -2.39 -0.02 0.63 16 46 H 0.45 7.20 8.96 -92.71 -0.83 6.37 16 Total: -1.00 -91.90 384.65 2.04 -89.86 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.59 Total: 20.18 kcal Atomic # 6 Polarization: 41.33 SS G_CDS: 6.62 Total: 47.95 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -5.18 Total: -115.43 kcal Atomic # 8 Polarization: -94.05 SS G_CDS: -0.83 Total: -94.88 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.03 Total: 52.33 kcal Total: -91.90 2.04 -89.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184862805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.802 kcal (2) G-P(sol) polarization free energy of solvation -91.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds