Wall clock time and date at job start Wed Apr 1 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.52582 * 2 1 4 4 C 1.53195 * 109.49213 * 239.92241 * 2 1 3 5 5 N 1.46924 * 108.77466 * 294.67964 * 4 2 1 6 6 C 1.34775 * 120.63002 * 126.41615 * 5 4 2 7 7 O 1.21691 * 119.99866 * 353.68819 * 6 5 4 8 8 C 1.46725 * 120.00461 * 173.68908 * 6 5 4 9 9 O 1.35344 * 126.64077 * 351.28302 * 8 6 5 10 10 C 1.33657 * 107.68237 * 179.83904 * 9 8 6 11 11 N 1.30614 * 109.15825 * 0.42711 * 10 9 8 12 12 C 1.33697 * 108.99410 * 359.73611 * 11 10 9 13 13 C 1.50693 * 126.27348 * 179.97438 * 12 11 10 14 14 F 1.39895 * 109.47236 * 30.04150 * 13 12 11 15 15 F 1.39907 * 109.46931 * 150.03975 * 13 12 11 16 16 C 1.46926 * 118.74253 * 306.39803 * 5 4 2 17 17 C 1.53194 * 108.77346 * 53.60585 * 16 5 4 18 18 C 1.53034 * 109.49804 * 120.08247 * 2 1 3 19 19 H 1.09005 * 109.44889 * 178.59436 * 18 2 1 20 20 C 1.52998 * 109.46153 * 298.56593 * 18 2 1 21 21 N 1.46500 * 109.47316 * 185.07155 * 20 18 2 22 22 C 1.36933 * 120.00110 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00062 * 359.97438 * 22 21 20 24 24 C 1.38819 * 119.99694 * 179.97438 * 22 21 20 25 25 N 1.31614 * 120.00126 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99503 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47058 * 90.00258 * 26 24 22 28 28 H 1.48501 * 109.46900 * 209.99614 * 26 24 22 29 29 H 1.48501 * 109.47394 * 329.99703 * 26 24 22 30 30 H 1.09007 * 109.46596 * 299.92137 * 1 2 3 31 31 H 1.09001 * 109.47144 * 59.91609 * 1 2 3 32 32 H 1.08995 * 109.47467 * 179.91743 * 1 2 3 33 33 H 1.09004 * 109.58395 * 174.90087 * 4 2 1 34 34 H 1.08994 * 109.70915 * 54.54393 * 4 2 1 35 35 H 1.08004 * 125.42015 * 180.16536 * 10 9 8 36 36 H 1.08997 * 109.47380 * 270.03687 * 13 12 11 37 37 H 1.08999 * 109.58725 * 293.81928 * 16 5 4 38 38 H 1.08997 * 109.58517 * 173.39432 * 16 5 4 39 39 H 1.09003 * 109.49303 * 185.41352 * 17 16 5 40 40 H 1.08990 * 109.52256 * 65.33649 * 17 16 5 41 41 H 1.08992 * 109.47192 * 65.06341 * 20 18 2 42 42 H 1.09004 * 109.46837 * 305.06479 * 20 18 2 43 43 H 0.97003 * 119.99917 * 359.97438 * 21 20 18 44 44 H 0.96995 * 120.00523 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2497 5 7 1.6515 -2.1381 -1.1697 6 6 0.9746 -2.7220 -2.1783 7 8 0.5803 -2.0520 -3.1146 8 6 0.7131 -4.1654 -2.1477 9 8 1.2228 -5.0602 -1.2694 10 6 0.7333 -6.2631 -1.5853 11 7 -0.0482 -6.1483 -2.6255 12 6 -0.0858 -4.8660 -3.0020 13 6 -0.8675 -4.2990 -4.1589 14 9 -2.0205 -5.0647 -4.3625 15 9 -1.2294 -2.9779 -3.8744 16 6 2.0139 -2.9040 0.0306 17 6 1.5029 -2.1558 1.2659 18 6 2.0408 -0.7231 1.2483 19 1 3.1306 -0.7445 1.2349 20 6 1.5607 0.0170 2.4983 21 7 2.1481 -0.6030 3.6887 22 6 1.8603 -0.1065 4.9320 23 1 1.2006 0.7422 5.0350 24 6 2.4165 -0.6943 6.0598 25 7 3.2201 -1.7291 5.9342 26 14 2.0244 -0.0166 7.7558 27 1 0.8224 -0.7010 8.2966 28 1 3.1774 -0.2520 8.6616 29 1 1.7616 1.4416 7.6576 30 1 -0.3633 0.5127 0.8908 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 3.1274 -0.6463 -1.2981 34 1 1.6028 -0.2737 -2.1403 35 1 0.9528 -7.1843 -1.0659 36 1 -0.2528 -4.3216 -5.0586 37 1 3.0978 -3.0044 0.0866 38 1 1.5552 -3.8918 -0.0139 39 1 1.8480 -2.6629 2.1669 40 1 0.4133 -2.1355 1.2546 41 1 0.4739 -0.0386 2.5585 42 1 1.8687 1.0611 2.4431 43 1 2.7410 -1.3651 3.5961 44 1 3.4241 -2.0808 5.0536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185159307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:58 Heat of formation + Delta-G solvation = -85.054272 kcal Electronic energy + Delta-G solvation = -31217.612290 eV Core-core repulsion = 26615.470707 eV Total energy + Delta-G solvation = -4602.141583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.15842 -47.15477 -44.07041 -40.52108 -38.32512 -35.93236 -35.13842 -33.69652 -32.11871 -31.45057 -30.32583 -27.88549 -27.04043 -26.39770 -24.31766 -23.41218 -23.25883 -22.53377 -21.62310 -20.74829 -18.88636 -18.25491 -18.03760 -17.59168 -17.26950 -17.22368 -17.10073 -16.35147 -16.02577 -15.51314 -15.03110 -14.85038 -14.58300 -14.31717 -14.09951 -13.97149 -13.74843 -13.66958 -13.43027 -13.17606 -13.03873 -12.83949 -12.56846 -12.42632 -12.05774 -11.73503 -11.68980 -11.58421 -11.22252 -11.08057 -10.76086 -10.72795 -10.53970 -10.47557 -10.24469 -10.13210 -10.01611 -9.69972 -9.21222 -8.89941 -8.83416 -7.02519 -6.13838 -3.13062 0.20188 1.78319 1.83826 2.56397 2.72236 2.97929 3.49584 3.54091 3.63691 3.68078 3.85810 3.95942 4.47574 4.57387 4.61497 4.69648 4.78079 4.82732 4.85760 4.96249 4.98843 5.11645 5.28162 5.39577 5.52680 5.55650 5.59373 5.65198 5.68938 5.74872 5.87277 5.92415 6.03178 6.15066 6.24293 6.27929 6.30463 6.47919 6.66982 6.80200 6.83248 7.02194 7.64152 7.78824 8.72625 9.20067 10.06278 10.21300 11.34891 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.002671 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.159026 B =10478.768946 C =11230.566341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.118 3.882 5 N -0.589 5.589 6 C 0.595 3.405 7 O -0.498 6.498 8 C -0.052 4.052 9 O -0.173 6.173 10 C 0.203 3.797 11 N -0.468 5.468 12 C -0.015 4.015 13 C 0.357 3.643 14 F -0.190 7.190 15 F -0.167 7.167 16 C 0.094 3.906 17 C -0.126 4.126 18 C -0.091 4.091 19 H 0.071 0.929 20 C 0.164 3.836 21 N -0.743 5.743 22 C -0.330 4.330 23 H 0.064 0.936 24 C -0.046 4.046 25 N -0.945 5.945 26 Si 1.082 2.918 27 H -0.295 1.295 28 H -0.288 1.288 29 H -0.295 1.295 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.263 0.737 36 H 0.132 0.868 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.019 0.981 43 H 0.366 0.634 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 -6.868 -20.767 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.380 3.620 7 O -0.375 6.375 8 C -0.109 4.109 9 O -0.060 6.060 10 C -0.022 4.022 11 N -0.195 5.195 12 C -0.140 4.140 13 C 0.303 3.697 14 F -0.171 7.171 15 F -0.148 7.148 16 C -0.028 4.028 17 C -0.164 4.164 18 C -0.110 4.110 19 H 0.090 0.910 20 C 0.037 3.963 21 N -0.389 5.389 22 C -0.461 4.461 23 H 0.082 0.918 24 C -0.243 4.243 25 N -0.591 5.591 26 Si 0.913 3.087 27 H -0.223 1.223 28 H -0.214 1.214 29 H -0.222 1.222 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.279 0.721 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.199 0.801 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.535 -6.948 -19.831 21.308 hybrid contribution 0.175 0.207 -1.026 1.061 sum -3.360 -6.742 -20.856 22.175 Atomic orbital electron populations 1.21866 0.94635 1.01980 1.01793 1.21478 0.96879 0.99610 0.93804 0.89588 1.21831 0.99743 0.78899 0.99841 1.47982 1.54319 1.12266 1.17573 1.16468 0.79251 0.82591 0.83643 1.90965 1.50552 1.61282 1.34656 1.23105 1.02413 0.91886 0.93492 1.84796 1.56851 1.17946 1.46365 1.28604 0.91427 0.89003 0.93200 1.70246 1.18981 1.17676 1.12623 1.22499 1.01101 0.90330 1.00046 1.19326 0.82313 0.73913 0.94181 1.93035 1.52553 1.75748 1.95740 1.93176 1.92388 1.34340 1.94851 1.22300 1.01078 0.95376 0.83999 1.21965 1.01586 0.96043 0.96798 1.21348 1.00218 0.94567 0.94826 0.91023 1.20643 0.95959 0.94631 0.85094 1.42389 1.57239 1.37482 1.01811 1.20063 1.27083 1.13724 0.85210 0.91820 1.25755 0.98188 0.97984 1.02382 1.70861 1.38005 1.25233 1.25016 0.83204 0.75868 0.74505 0.75140 1.22328 1.21379 1.22173 0.91836 0.92930 0.92789 0.90870 0.88548 0.72125 0.85139 0.90590 0.88598 0.89590 0.91205 0.95935 0.96305 0.80093 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.38 37.16 0.31 -1.56 16 2 C -0.10 -1.20 2.72 -90.50 -0.25 -1.44 16 3 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.31 5.84 -3.71 -0.02 1.29 16 5 N -0.59 -6.90 2.41 -174.29 -0.42 -7.32 16 6 C 0.60 7.54 7.51 -12.83 -0.10 7.44 16 7 O -0.50 -7.17 12.83 5.20 0.07 -7.11 16 8 C -0.05 -0.59 6.75 -36.84 -0.25 -0.84 16 9 O -0.17 -1.61 7.46 4.44 0.03 -1.58 16 10 C 0.20 1.48 13.21 52.24 0.69 2.17 16 11 N -0.47 -4.89 11.21 -10.89 -0.12 -5.01 16 12 C -0.01 -0.17 6.77 -82.47 -0.56 -0.73 16 13 C 0.36 3.85 5.57 36.00 0.20 4.05 16 14 F -0.19 -2.26 17.29 2.25 0.04 -2.22 16 15 F -0.17 -2.22 13.73 2.25 0.03 -2.18 16 16 C 0.09 1.06 6.14 -3.71 -0.02 1.04 16 17 C -0.13 -1.75 4.90 -26.61 -0.13 -1.88 16 18 C -0.09 -1.33 1.96 -90.58 -0.18 -1.50 16 19 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 20 C 0.16 3.17 5.18 -4.04 -0.02 3.15 16 21 N -0.74 -18.08 5.32 -59.91 -0.32 -18.39 16 22 C -0.33 -9.20 9.99 -15.06 -0.15 -9.35 16 23 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 25 N -0.95 -28.64 13.70 55.49 0.76 -27.88 16 26 Si 1.08 25.74 29.92 -169.99 -5.09 20.65 16 27 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.06 0.86 6.58 -51.92 -0.34 0.52 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.74 5.97 -51.93 -0.31 0.43 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.09 7.00 -51.93 -0.36 0.73 16 35 H 0.26 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.02 4.24 -52.77 -0.22 0.79 16 39 H 0.09 1.36 7.15 -51.93 -0.37 0.98 16 40 H 0.07 1.03 6.34 -51.93 -0.33 0.70 16 41 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.37 8.94 5.68 -40.82 -0.23 8.71 16 44 H 0.25 7.49 6.77 -40.82 -0.28 7.22 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -34.64 354.96 -5.62 -40.26 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.39 Total: 5.01 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.57 Total: 0.41 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.10 Total: -58.60 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.10 Total: -8.68 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.07 Total: -4.40 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.09 Total: 20.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.64 -5.62 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185159307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.794 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds