Wall clock time and date at job start Wed Apr 1 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.52222 * 2 1 4 4 C 1.53193 * 109.49798 * 120.08217 * 2 1 3 5 5 N 1.46919 * 108.77717 * 65.31692 * 4 2 1 6 6 C 1.34781 * 120.63095 * 233.58958 * 5 4 2 7 7 O 1.21677 * 120.00164 * 354.43588 * 6 5 4 8 8 C 1.46728 * 119.99740 * 174.43252 * 6 5 4 9 9 O 1.35342 * 126.64608 * 352.69685 * 8 6 5 10 10 C 1.33666 * 107.68499 * 179.87306 * 9 8 6 11 11 N 1.30618 * 109.15204 * 0.39477 * 10 9 8 12 12 C 1.33696 * 108.99845 * 359.75872 * 11 10 9 13 13 C 1.50696 * 126.27432 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.47063 * 119.97245 * 13 12 11 15 15 F 1.39899 * 109.47237 * 239.96857 * 13 12 11 16 16 C 1.46923 * 118.74216 * 53.60986 * 5 4 2 17 17 C 1.53199 * 108.77456 * 306.39315 * 16 5 4 18 18 C 1.53042 * 109.50156 * 239.91887 * 2 1 3 19 19 H 1.08995 * 109.46178 * 181.39296 * 18 2 1 20 20 C 1.53001 * 109.44719 * 61.42528 * 18 2 1 21 21 N 1.46499 * 109.46965 * 174.96429 * 20 18 2 22 22 C 1.36941 * 119.99661 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00065 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99445 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00537 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99879 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46960 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47355 * 120.00297 * 26 24 22 29 29 H 1.48499 * 109.47491 * 240.00461 * 26 24 22 30 30 H 1.09004 * 109.47189 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47316 * 300.08034 * 1 2 3 32 32 H 1.09005 * 109.46718 * 60.08357 * 1 2 3 33 33 H 1.09000 * 109.58382 * 305.53057 * 4 2 1 34 34 H 1.08994 * 109.59227 * 185.10753 * 4 2 1 35 35 H 1.07998 * 125.42103 * 180.15280 * 10 9 8 36 36 H 1.08996 * 109.47418 * 359.97357 * 13 12 11 37 37 H 1.09000 * 109.59474 * 186.60859 * 16 5 4 38 38 H 1.09003 * 109.70336 * 66.24410 * 16 5 4 39 39 H 1.08999 * 109.49745 * 294.68289 * 17 16 5 40 40 H 1.09000 * 109.52467 * 174.59727 * 17 16 5 41 41 H 1.09001 * 109.47451 * 294.96840 * 20 18 2 42 42 H 1.09002 * 109.46960 * 54.96917 * 20 18 2 43 43 H 0.96992 * 120.00339 * 0.02562 * 21 20 18 44 44 H 0.96998 * 120.00154 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1696 6 6 0.9747 -2.7221 2.1783 7 8 0.7690 -2.1082 3.2085 8 6 0.4859 -4.0980 2.0340 9 8 0.5156 -4.8521 0.9106 10 6 -0.0225 -6.0399 1.2045 11 7 -0.3894 -6.0457 2.4581 12 6 -0.0915 -4.8623 3.0043 13 6 -0.3465 -4.4492 4.4309 14 9 0.8675 -4.1274 5.0473 15 9 -1.1893 -3.3327 4.4496 16 6 2.0140 -2.9040 -0.0307 17 6 1.5030 -2.1558 -1.2660 18 6 2.0409 -0.7231 -1.2483 19 1 3.1305 -0.7444 -1.2352 20 6 1.5604 0.0171 -2.4982 21 7 2.1471 -0.6031 -3.6887 22 6 1.8580 -0.1072 -4.9320 23 1 1.1978 0.7413 -5.0348 24 6 2.4135 -0.6952 -6.0601 25 7 3.2177 -1.7296 -5.9348 26 14 2.0198 -0.0184 -7.7561 27 1 1.0985 1.1391 -7.6255 28 1 3.2747 0.4206 -8.4175 29 1 1.3733 -1.0763 -8.5734 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.6007 -0.2731 2.1389 34 1 3.1274 -0.6463 1.2981 35 1 -0.1392 -6.8623 0.5143 36 1 -0.8200 -5.2710 4.9680 37 1 1.5554 -3.8919 0.0137 38 1 3.0977 -3.0065 -0.0879 39 1 0.4133 -2.1355 -1.2541 40 1 1.8477 -2.6626 -2.1674 41 1 0.4735 -0.0381 -2.5580 42 1 1.8687 1.0612 -2.4431 43 1 2.7397 -1.3654 -3.5964 44 1 3.6055 -2.1407 -6.7231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185159312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:00 Heat of formation + Delta-G solvation = -108.271883 kcal Electronic energy + Delta-G solvation = -31256.294307 eV Core-core repulsion = 26653.145933 eV Total energy + Delta-G solvation = -4603.148374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.03008 -48.05490 -44.79151 -41.48600 -39.39866 -36.88462 -36.33805 -34.88498 -33.35655 -32.23277 -32.02574 -28.87856 -28.50426 -27.46052 -25.68267 -24.78636 -24.21563 -23.53801 -22.69005 -21.66158 -19.90855 -19.25249 -18.94589 -18.63376 -18.38629 -18.29793 -17.78799 -17.29590 -16.85528 -16.74617 -16.36235 -15.83012 -15.63241 -15.38265 -15.33604 -15.19935 -14.94571 -14.75794 -14.44727 -14.39957 -13.94684 -13.86563 -13.75700 -13.54455 -12.98322 -12.89392 -12.82277 -12.74732 -12.63731 -12.42566 -12.18051 -12.07839 -12.02812 -11.91559 -11.59119 -11.57152 -11.27503 -11.16088 -10.88997 -10.52244 -9.78759 -8.95511 -7.93965 -5.21193 -0.58587 1.05283 1.11990 1.47926 1.48641 1.58134 1.71119 1.81145 2.24392 2.56812 3.08541 3.10886 3.14877 3.39884 3.68563 3.68925 3.77060 3.84772 3.89044 3.96494 4.01954 4.16477 4.23632 4.29982 4.41356 4.42575 4.62184 4.67308 4.68882 4.74558 4.79535 4.94454 5.01432 5.12379 5.15161 5.15636 5.21372 5.26525 5.44182 5.52461 5.57343 5.99965 6.20793 6.29409 6.71131 7.36288 8.12646 8.36647 9.29486 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.002686 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.557433 B =10421.146991 C =11247.491445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.099 0.901 4 C 0.120 3.880 5 N -0.588 5.588 6 C 0.593 3.407 7 O -0.530 6.530 8 C -0.072 4.072 9 O -0.175 6.175 10 C 0.230 3.770 11 N -0.492 5.492 12 C -0.020 4.020 13 C 0.353 3.647 14 F -0.198 7.198 15 F -0.196 7.196 16 C 0.096 3.904 17 C -0.116 4.116 18 C -0.080 4.080 19 H 0.071 0.929 20 C 0.159 3.841 21 N -0.742 5.742 22 C -0.242 4.242 23 H 0.071 0.929 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.968 3.032 27 H -0.269 1.269 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.315 0.685 36 H 0.170 0.830 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.019 0.981 42 H 0.017 0.983 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 -8.887 19.668 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.117 0.883 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.379 3.621 7 O -0.408 6.408 8 C -0.129 4.129 9 O -0.062 6.062 10 C 0.006 3.994 11 N -0.219 5.219 12 C -0.144 4.144 13 C 0.299 3.701 14 F -0.179 7.179 15 F -0.177 7.177 16 C -0.025 4.025 17 C -0.154 4.154 18 C -0.099 4.099 19 H 0.090 0.910 20 C 0.033 3.967 21 N -0.385 5.385 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.798 3.202 27 H -0.194 1.194 28 H -0.221 1.221 29 H -0.220 1.220 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.329 0.671 36 H 0.187 0.813 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.209 0.791 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.411 -8.868 20.362 23.116 hybrid contribution 0.473 0.610 -1.715 1.881 sum -5.938 -8.258 18.647 21.241 Atomic orbital electron populations 1.21822 0.95021 1.01272 1.01772 1.21437 0.96420 1.00125 0.92975 0.88292 1.21851 1.00856 0.78467 0.98950 1.48028 1.53790 1.12431 1.17626 1.16681 0.78735 0.82652 0.84037 1.90924 1.58955 1.62557 1.28382 1.22991 1.08778 0.94985 0.86145 1.84750 1.61963 1.24892 1.34559 1.29853 0.89076 0.87380 0.93099 1.70230 1.22478 1.20084 1.09074 1.22576 1.01918 0.91791 0.98142 1.19715 0.76695 0.86757 0.86982 1.93023 1.47361 1.94197 1.83313 1.93039 1.70847 1.56883 1.96920 1.22393 1.01650 0.95809 0.82683 1.21803 1.00893 0.95558 0.97145 1.21216 1.00197 0.94851 0.93633 0.91024 1.20832 0.95458 0.94750 0.85675 1.42559 1.56853 1.37532 1.01541 1.19622 1.22158 1.10432 0.85233 0.91116 1.25466 1.00657 0.99097 1.01226 1.69791 1.37111 1.25752 1.29015 0.85153 0.77082 0.77561 0.80445 1.19405 1.22127 1.21996 0.93772 0.92234 0.92492 0.88895 0.89329 0.67100 0.81350 0.86991 0.89565 0.91956 0.91302 0.96281 0.96536 0.79130 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.38 71.98 0.60 -2.88 16 2 C -0.09 -2.12 2.72 -10.72 -0.03 -2.15 16 3 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.12 2.67 5.81 86.36 0.50 3.17 16 5 N -0.59 -14.04 2.41 -823.57 -1.98 -16.02 16 6 C 0.59 15.94 7.66 86.46 0.66 16.60 16 7 O -0.53 -16.84 13.42 -4.28 -0.06 -16.89 16 8 C -0.07 -1.68 6.86 24.05 0.16 -1.51 16 9 O -0.17 -3.08 7.33 -7.09 -0.05 -3.13 16 10 C 0.23 2.65 13.21 130.42 1.72 4.37 16 11 N -0.49 -8.60 11.26 -303.12 -3.41 -12.01 16 12 C -0.02 -0.44 6.59 41.83 0.28 -0.16 16 13 C 0.35 7.41 5.11 71.23 0.36 7.77 16 14 F -0.20 -4.97 16.45 44.97 0.74 -4.23 16 15 F -0.20 -5.09 15.98 44.97 0.72 -4.37 16 16 C 0.10 2.14 6.33 86.37 0.55 2.69 16 17 C -0.12 -3.18 4.91 30.68 0.15 -3.03 16 18 C -0.08 -2.30 1.96 -10.76 -0.02 -2.32 16 19 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 20 C 0.16 5.99 5.18 86.38 0.45 6.44 16 21 N -0.74 -35.96 5.32 -343.45 -1.83 -37.79 16 22 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 23 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 25 N -0.97 -57.14 13.06 21.65 0.28 -56.86 16 26 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 30 H 0.04 1.16 5.97 -2.39 -0.01 1.15 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.47 6.58 -2.38 -0.02 1.46 16 33 H 0.09 2.17 7.04 -2.39 -0.02 2.15 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.31 -0.33 8.06 -2.91 -0.02 -0.36 16 36 H 0.17 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.28 3.82 -46.00 -0.18 2.10 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.78 6.33 -2.39 -0.02 1.77 16 40 H 0.07 2.21 7.15 -2.39 -0.02 2.20 16 41 H 0.02 0.74 6.74 -2.39 -0.02 0.73 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.38 19.08 6.85 -92.71 -0.63 18.45 16 44 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -72.89 357.98 3.39 -69.49 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.26 Total: 21.50 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.70 Total: 13.03 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -6.94 Total: -122.68 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.11 Total: -20.03 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 1.46 Total: -8.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -72.89 3.39 -69.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185159312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.778 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds