Wall clock time and date at job start Wed Apr 1 2020 02:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 109.46768 * 2 1 4 4 C 1.46902 * 109.47416 * 239.99916 * 2 1 3 5 5 C 1.46904 * 109.47081 * 119.99632 * 2 1 3 6 6 C 1.53001 * 109.46773 * 53.50412 * 5 2 1 7 7 H 1.08998 * 109.46878 * 173.25624 * 6 5 2 8 8 C 1.50699 * 109.47266 * 293.25349 * 6 5 2 9 9 H 1.08001 * 120.00157 * 114.28416 * 8 6 5 10 10 C 1.37881 * 120.00208 * 294.28343 * 8 6 5 11 11 N 1.31515 * 119.99404 * 356.92754 * 10 8 6 12 12 Si 1.86799 * 120.00228 * 176.92886 * 10 8 6 13 13 H 1.48497 * 109.47094 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.46745 * 300.00135 * 12 10 8 15 15 H 1.48498 * 109.47120 * 59.99877 * 12 10 8 16 16 O 1.42896 * 109.47301 * 53.25438 * 6 5 2 17 17 C 1.42904 * 113.99985 * 90.53028 * 16 6 5 18 18 C 1.50698 * 109.47187 * 182.76364 * 17 16 6 19 19 C 1.38259 * 120.00463 * 269.73076 * 18 17 16 20 20 C 1.38213 * 120.00029 * 179.78692 * 19 18 17 21 21 C 1.38257 * 120.00072 * 0.46514 * 20 19 18 22 22 C 1.38216 * 119.99948 * 359.76300 * 21 20 19 23 23 S 1.76194 * 120.00121 * 179.97438 * 22 21 20 24 24 N 1.65598 * 107.22091 * 270.02606 * 23 22 21 25 25 O 1.42098 * 106.40142 * 23.56531 * 23 22 21 26 26 O 1.42102 * 106.40429 * 156.48634 * 23 22 21 27 27 C 1.38215 * 119.99487 * 90.00202 * 18 17 16 28 28 H 1.09000 * 109.47111 * 282.56479 * 1 2 3 29 29 H 1.09001 * 109.47020 * 42.57016 * 1 2 3 30 30 H 1.09003 * 109.46905 * 162.56939 * 1 2 3 31 31 H 1.09004 * 109.46853 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47009 * 299.99765 * 3 2 1 33 33 H 1.09001 * 109.47298 * 59.99946 * 3 2 1 34 34 H 1.08998 * 109.46873 * 317.97780 * 4 2 1 35 35 H 1.08999 * 109.46470 * 77.97251 * 4 2 1 36 36 H 1.08997 * 109.47129 * 197.97028 * 4 2 1 37 37 H 1.09000 * 109.47054 * 293.50661 * 5 2 1 38 38 H 1.09003 * 109.46697 * 173.50255 * 5 2 1 39 39 H 0.96999 * 120.00501 * 357.06305 * 11 10 8 40 40 H 1.09002 * 109.47290 * 302.76691 * 17 16 6 41 41 H 1.08998 * 109.46878 * 62.76822 * 17 16 6 42 42 H 1.08001 * 120.00003 * 359.97438 * 19 18 17 43 43 H 1.08001 * 120.00100 * 180.25283 * 20 19 18 44 44 H 1.07997 * 119.99812 * 179.79035 * 21 20 19 45 45 H 0.96999 * 119.99911 * 0.02562 * 24 23 22 46 46 H 0.97000 * 120.00479 * 179.97438 * 24 23 22 47 47 H 1.07991 * 120.00572 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9588 -0.6925 -1.1994 5 6 1.9587 -0.6924 1.1995 6 6 1.3198 -2.0801 1.2838 7 1 1.7710 -2.6386 2.1039 8 6 -0.1605 -1.9376 1.5277 9 1 -0.8652 -2.2572 0.7743 10 6 -0.6153 -1.3992 2.7127 11 7 0.2400 -1.0659 3.6545 12 14 -2.4462 -1.1431 2.9805 13 1 -2.6722 -0.5542 4.3248 14 1 -2.9743 -0.2223 1.9420 15 1 -3.1475 -2.4487 2.8872 16 8 1.5351 -2.7790 0.0562 17 6 2.7329 -3.5581 0.0333 18 6 2.8930 -4.1935 -1.3238 19 6 2.3563 -5.4438 -1.5694 20 6 2.4994 -6.0246 -2.8154 21 6 3.1875 -5.3595 -3.8133 22 6 3.7280 -4.1117 -3.5663 23 16 4.6055 -3.2643 -4.8377 24 7 6.1964 -3.7071 -4.7142 25 8 4.1363 -3.7934 -6.0702 26 8 4.5473 -1.8821 -4.5128 27 6 3.5812 -3.5288 -2.3211 28 1 -0.3633 0.2236 1.0030 29 1 -0.3633 0.7568 -0.6952 30 1 -0.3633 -0.9805 -0.3079 31 1 3.0487 1.3851 0.0005 32 1 1.5953 1.8988 -0.8900 33 1 1.5953 1.8989 0.8900 34 1 1.3601 -1.5868 -1.3725 35 1 1.8780 -0.0290 -2.0604 36 1 3.0015 -0.9754 -1.0553 37 1 1.6934 -0.1158 2.0856 38 1 3.0425 -0.7942 1.1432 39 1 1.1868 -1.2380 3.5329 40 1 3.5889 -2.9146 0.2365 41 1 2.6746 -4.3364 0.7942 42 1 1.8227 -5.9654 -0.7886 43 1 2.0767 -6.9995 -3.0086 44 1 3.3022 -5.8148 -4.7858 45 1 6.4744 -4.3296 -4.0243 46 1 6.8502 -3.3445 -5.3323 47 1 4.0038 -2.5539 -2.1281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222760749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:44 Heat of formation + Delta-G solvation = 19.061255 kcal Electronic energy + Delta-G solvation = -29869.845515 eV Core-core repulsion = 25877.829279 eV Total energy + Delta-G solvation = -3992.016236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.32036 -40.78149 -38.68900 -38.29867 -36.98154 -35.56851 -34.37937 -33.38033 -32.61325 -31.03160 -30.26078 -30.04480 -27.91522 -26.88372 -24.75164 -24.55478 -23.24690 -22.95753 -20.66526 -19.63835 -19.15746 -18.85237 -18.53903 -18.35563 -18.11362 -17.81559 -17.37753 -16.86445 -16.60365 -16.45893 -15.90660 -15.64712 -15.23754 -15.07847 -14.94553 -14.74633 -14.55042 -14.18194 -14.05569 -13.91442 -13.82416 -13.63214 -13.53350 -13.32224 -13.27657 -13.24212 -13.21612 -13.10127 -12.79727 -12.56582 -12.16828 -11.99526 -11.92837 -11.69029 -11.44670 -10.94730 -10.70158 -10.38214 -10.23609 -10.14821 -8.23414 -6.08649 -0.84568 -0.49017 -0.11832 0.52579 1.83556 2.03505 2.09367 2.22023 2.33098 2.43066 2.50876 2.52938 2.56199 2.79385 2.97664 3.21355 3.29027 3.34499 3.39407 3.50129 3.57454 3.67422 3.69952 3.72608 3.81181 3.81429 3.86788 3.91489 3.95827 4.10321 4.13528 4.23050 4.33807 4.38700 4.39972 4.47625 4.58690 4.69384 4.79117 4.87203 4.94331 4.98240 5.11455 5.47474 5.77730 5.80488 6.06534 6.62368 6.84597 7.54155 9.07717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.247 5.247 3 C -0.044 4.044 4 C -0.047 4.047 5 C -0.034 4.034 6 C 0.185 3.815 7 H 0.057 0.943 8 C -0.622 4.622 9 H 0.079 0.921 10 C 0.033 3.967 11 N -0.876 5.876 12 Si 1.059 2.941 13 H -0.273 1.273 14 H -0.278 1.278 15 H -0.276 1.276 16 O -0.376 6.376 17 C 0.093 3.907 18 C -0.107 4.107 19 C -0.034 4.034 20 C -0.137 4.137 21 C -0.012 4.012 22 C -0.678 4.678 23 S 2.703 3.297 24 N -1.251 6.251 25 O -0.959 6.959 26 O -0.966 6.966 27 C -0.011 4.011 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.270 0.730 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.417 0.583 46 H 0.422 0.578 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.997 2.410 -7.047 10.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 N 0.096 4.904 3 C -0.186 4.186 4 C -0.188 4.188 5 C -0.156 4.156 6 C 0.128 3.872 7 H 0.074 0.926 8 C -0.659 4.659 9 H 0.097 0.903 10 C -0.176 4.176 11 N -0.509 5.509 12 Si 0.883 3.117 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.201 1.201 16 O -0.296 6.296 17 C 0.017 3.983 18 C -0.108 4.108 19 C -0.052 4.052 20 C -0.155 4.155 21 C -0.031 4.031 22 C -0.765 4.765 23 S 2.792 3.208 24 N -0.926 5.926 25 O -0.949 6.949 26 O -0.955 6.955 27 C -0.030 4.030 28 H 0.147 0.853 29 H 0.099 0.901 30 H 0.159 0.841 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.164 0.836 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.244 0.756 46 H 0.253 0.747 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.216 3.660 -6.738 9.871 hybrid contribution 1.827 -1.344 -0.039 2.269 sum 8.043 2.316 -6.777 10.769 Atomic orbital electron populations 1.24787 0.75036 1.08524 1.08370 1.45648 1.16647 1.13170 1.14963 1.24071 1.04456 0.81779 1.08287 1.24523 1.04854 1.02855 0.86553 1.24839 1.00600 1.02479 0.87727 1.20294 0.98347 0.84524 0.84031 0.92581 1.21959 0.88919 1.48661 1.06326 0.90278 1.26060 1.07522 0.93051 0.90924 1.71063 1.04290 1.41650 1.33861 0.83576 0.72188 0.78049 0.77862 1.19722 1.20409 1.20132 1.87961 1.41129 1.63019 1.37443 1.21378 0.88612 0.94958 0.93387 1.19764 1.00123 0.95404 0.95536 1.21545 0.92842 0.93730 0.97063 1.21414 0.99871 1.01122 0.93124 1.21079 0.91192 0.91316 0.99537 1.30546 1.21035 1.09901 1.15034 1.01515 0.72500 0.73473 0.73339 1.53041 1.28410 1.63603 1.47512 1.93633 1.79793 1.79826 1.41611 1.93587 1.86088 1.31483 1.84352 1.20771 0.93904 0.97970 0.90359 0.85345 0.90132 0.84080 0.87360 0.86920 0.86710 0.83601 0.87955 0.88318 0.84958 0.88994 0.91800 0.92806 0.91452 0.84511 0.84310 0.83683 0.75580 0.74714 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.13 6.77 60.07 0.41 0.53 16 2 N -0.25 1.71 0.05 -395.61 -0.02 1.69 16 3 C -0.04 0.43 7.87 60.07 0.47 0.90 16 4 C -0.05 0.34 7.14 60.07 0.43 0.77 16 5 C -0.03 0.13 3.90 -3.82 -0.01 0.12 16 6 C 0.19 0.07 1.94 -27.88 -0.05 0.01 16 7 H 0.06 0.16 7.29 -51.93 -0.38 -0.22 16 8 C -0.62 -2.50 5.19 -34.44 -0.18 -2.68 16 9 H 0.08 0.39 6.77 -52.49 -0.36 0.03 16 10 C 0.03 0.22 4.10 -17.82 -0.07 0.14 16 11 N -0.88 -7.55 12.89 55.43 0.71 -6.83 16 12 Si 1.06 6.53 29.69 -169.99 -5.05 1.49 16 13 H -0.27 -2.26 7.11 56.52 0.40 -1.86 16 14 H -0.28 -1.24 7.11 56.52 0.40 -0.84 16 15 H -0.28 -1.99 7.11 56.52 0.40 -1.59 16 16 O -0.38 0.47 5.94 -35.23 -0.21 0.27 16 17 C 0.09 -0.25 5.45 36.00 0.20 -0.05 16 18 C -0.11 0.27 5.51 -104.62 -0.58 -0.31 16 19 C -0.03 0.07 9.70 -39.58 -0.38 -0.31 16 20 C -0.14 0.33 10.05 -39.58 -0.40 -0.07 16 21 C -0.01 0.03 9.52 -39.58 -0.38 -0.35 16 22 C -0.68 1.65 5.94 -39.58 -0.24 1.42 16 23 S 2.70 -5.18 6.28 -107.50 -0.68 -5.86 16 24 N -1.25 6.25 9.55 60.35 0.58 6.82 16 25 O -0.96 -1.88 17.28 -57.17 -0.99 -2.87 16 26 O -0.97 -0.35 17.28 -57.17 -0.99 -1.34 16 27 C -0.01 0.03 9.18 -39.58 -0.36 -0.33 16 28 H 0.13 -0.25 5.59 -51.93 -0.29 -0.54 16 29 H 0.08 -0.60 7.84 -51.93 -0.41 -1.01 16 30 H 0.14 -0.39 4.82 -51.93 -0.25 -0.64 16 31 H 0.11 -1.18 8.14 -51.93 -0.42 -1.60 16 32 H 0.11 -1.26 7.89 -51.93 -0.41 -1.67 16 33 H 0.11 -1.06 8.10 -51.93 -0.42 -1.48 16 34 H 0.15 -0.74 5.12 -51.93 -0.27 -1.01 16 35 H 0.10 -0.91 7.83 -51.93 -0.41 -1.32 16 36 H 0.10 -0.79 6.54 -51.93 -0.34 -1.13 16 37 H 0.13 -0.23 6.01 -51.93 -0.31 -0.54 16 38 H 0.09 -0.57 7.73 -51.93 -0.40 -0.97 16 39 H 0.27 1.93 5.94 -40.82 -0.24 1.69 16 40 H 0.05 -0.26 7.97 -51.93 -0.41 -0.67 16 41 H 0.07 -0.13 8.07 -51.93 -0.42 -0.54 16 42 H 0.14 -0.39 8.06 -52.49 -0.42 -0.81 16 43 H 0.14 -0.57 8.06 -52.49 -0.42 -0.99 16 44 H 0.15 -0.45 7.62 -52.49 -0.40 -0.85 16 45 H 0.42 -2.98 8.92 -34.47 -0.31 -3.29 16 46 H 0.42 -2.51 8.96 -34.47 -0.31 -2.82 16 47 H 0.14 -0.69 6.70 -52.49 -0.35 -1.04 16 LS Contribution 372.49 15.07 5.61 5.61 Total: 0.00 -18.04 372.49 -8.92 -26.96 By element: Atomic # 1 Polarization: -18.97 SS G_CDS: -6.74 Total: -25.72 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.15 Total: -0.22 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: 1.27 Total: 1.68 kcal Atomic # 8 Polarization: -1.76 SS G_CDS: -2.19 Total: -3.94 kcal Atomic # 14 Polarization: 6.53 SS G_CDS: -5.05 Total: 1.49 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -0.68 Total: -5.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -18.04 -8.92 -26.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222760749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.019 kcal (2) G-P(sol) polarization free energy of solvation -18.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds