Wall clock time and date at job start Wed Apr 1 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 109.47542 * 2 1 4 4 C 1.46903 * 109.47274 * 239.99657 * 2 1 3 5 5 C 1.46905 * 109.46980 * 120.00145 * 2 1 3 6 6 C 1.52997 * 109.47027 * 54.14537 * 5 2 1 7 7 H 1.09008 * 109.47028 * 174.19481 * 6 5 2 8 8 C 1.50700 * 109.47516 * 294.19353 * 6 5 2 9 9 H 1.08001 * 119.99533 * 115.05143 * 8 6 5 10 10 C 1.37872 * 120.00281 * 295.05542 * 8 6 5 11 11 N 1.31507 * 120.00333 * 179.97438 * 10 8 6 12 12 Si 1.86803 * 119.99584 * 359.97438 * 10 8 6 13 13 H 1.48503 * 109.47097 * 90.00562 * 12 10 8 14 14 H 1.48505 * 109.46942 * 210.00151 * 12 10 8 15 15 H 1.48492 * 109.47285 * 330.00084 * 12 10 8 16 16 O 1.42903 * 109.47066 * 54.19595 * 6 5 2 17 17 C 1.42902 * 113.99911 * 95.20311 * 16 6 5 18 18 C 1.50704 * 109.47385 * 184.72543 * 17 16 6 19 19 C 1.38233 * 120.00067 * 269.72886 * 18 17 16 20 20 C 1.38234 * 120.00013 * 179.73825 * 19 18 17 21 21 C 1.38237 * 119.99630 * 0.53053 * 20 19 18 22 22 S 1.76206 * 119.99698 * 179.76735 * 21 20 19 23 23 N 1.65595 * 107.21482 * 269.97605 * 22 21 20 24 24 O 1.42101 * 106.40034 * 23.51437 * 22 21 20 25 25 O 1.42097 * 106.40073 * 156.43611 * 22 21 20 26 26 C 1.38233 * 120.00305 * 359.74164 * 21 20 19 27 27 C 1.38234 * 119.99955 * 359.97438 * 26 21 20 28 28 H 1.08996 * 109.47290 * 290.84813 * 1 2 3 29 29 H 1.08998 * 109.46534 * 50.84722 * 1 2 3 30 30 H 1.09000 * 109.46989 * 170.83744 * 1 2 3 31 31 H 1.08997 * 109.47419 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47126 * 299.99919 * 3 2 1 33 33 H 1.09005 * 109.46902 * 59.99960 * 3 2 1 34 34 H 1.08997 * 109.47072 * 316.42522 * 4 2 1 35 35 H 1.09003 * 109.46987 * 76.42637 * 4 2 1 36 36 H 1.08996 * 109.47204 * 196.42352 * 4 2 1 37 37 H 1.08997 * 109.46786 * 294.15046 * 5 2 1 38 38 H 1.08997 * 109.47181 * 174.14762 * 5 2 1 39 39 H 0.97004 * 120.00228 * 179.97438 * 11 10 8 40 40 H 1.09003 * 109.47004 * 304.72325 * 17 16 6 41 41 H 1.08996 * 109.47325 * 64.72381 * 17 16 6 42 42 H 1.08008 * 120.00003 * 359.97438 * 19 18 17 43 43 H 1.07993 * 120.00040 * 180.29284 * 20 19 18 44 44 H 0.97005 * 120.00506 * 0.02562 * 23 22 21 45 45 H 0.97007 * 119.99922 * 179.97438 * 23 22 21 46 46 H 1.07997 * 120.00062 * 180.02562 * 26 21 20 47 47 H 1.08001 * 120.00138 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9588 1.3849 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9587 -0.6926 1.1995 6 6 1.3320 -2.0863 1.2751 7 1 1.7722 -2.6379 2.1059 8 6 -0.1542 -1.9580 1.4887 9 1 -0.8405 -2.2983 0.7273 10 6 -0.6379 -1.4062 2.6559 11 7 -1.9349 -1.2938 2.8420 12 14 0.5491 -0.8181 3.9729 13 1 0.8890 0.6073 3.7323 14 1 -0.0850 -0.9571 5.3086 15 1 1.7869 -1.6370 3.9251 16 8 1.5792 -2.7866 0.0542 17 6 2.7277 -3.6360 0.0936 18 6 2.9596 -4.2309 -1.2715 19 6 2.3731 -5.4363 -1.6089 20 6 2.5815 -5.9793 -2.8629 21 6 3.3854 -5.3223 -3.7756 22 16 3.6560 -6.0175 -5.3720 23 7 4.9938 -6.9873 -5.2638 24 8 2.5551 -6.8793 -5.6262 25 8 4.0109 -4.9378 -6.2249 26 6 3.9765 -4.1197 -3.4362 27 6 3.7633 -3.5738 -2.1843 28 1 -0.3633 0.3657 0.9603 29 1 -0.3632 0.6489 -0.7969 30 1 -0.3633 -1.0146 -0.1636 31 1 3.0487 1.3849 0.0005 32 1 1.5955 1.8988 -0.8900 33 1 1.5954 1.8988 0.8900 34 1 1.3779 -1.6014 -1.3568 35 1 1.8524 -0.0389 -2.0652 36 1 3.0091 -0.9512 -1.0662 37 1 1.6833 -0.1218 2.0863 38 1 3.0436 -0.7842 1.1487 39 1 -2.2752 -0.9058 3.6634 40 1 3.6004 -3.0536 0.3892 41 1 2.5633 -4.4360 0.8154 42 1 1.7488 -5.9519 -0.8941 43 1 2.1194 -6.9186 -3.1282 44 1 5.4607 -7.0772 -4.4183 45 1 5.3102 -7.4662 -6.0458 46 1 4.6042 -3.6062 -4.1495 47 1 4.2255 -2.6344 -1.9189 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223014749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:47 Heat of formation + Delta-G solvation = 32.634045 kcal Electronic energy + Delta-G solvation = -29357.689368 eV Core-core repulsion = 25366.261691 eV Total energy + Delta-G solvation = -3991.427676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.152 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -43.41311 -40.76091 -38.75770 -38.17777 -36.85721 -35.15128 -34.27645 -33.56699 -32.36708 -31.92783 -30.29745 -30.04362 -28.17723 -27.37737 -24.48068 -24.14099 -23.22342 -22.98666 -20.66334 -19.85735 -19.56292 -18.58121 -18.45063 -18.42249 -17.94810 -17.54916 -17.33675 -16.90854 -16.68728 -16.42822 -16.13122 -15.76975 -15.42390 -15.08445 -14.84117 -14.77653 -14.63739 -14.33086 -14.25045 -14.06557 -14.00331 -13.72340 -13.53824 -13.38550 -13.20184 -13.18598 -13.11083 -13.00415 -12.75154 -12.65280 -12.44582 -12.13589 -11.90745 -11.58265 -11.52802 -11.15712 -10.67422 -10.58423 -10.35994 -10.30848 -7.93647 -6.01762 -0.78073 -0.50051 0.02959 0.42787 1.48260 1.65478 1.86305 1.87871 2.15817 2.35808 2.41092 2.46623 2.56763 2.60584 2.79408 3.15640 3.22237 3.24081 3.27578 3.48027 3.54353 3.57988 3.61342 3.62212 3.70690 3.73670 3.76070 3.86413 4.00258 4.03220 4.15059 4.21517 4.30954 4.38680 4.42736 4.43388 4.67721 4.73688 4.79761 4.86662 4.89336 5.10658 5.15548 5.50652 5.52494 5.89001 5.90613 6.61586 7.06304 7.53074 9.14762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.248 5.248 3 C -0.047 4.047 4 C -0.043 4.043 5 C -0.037 4.037 6 C 0.171 3.829 7 H 0.067 0.933 8 C -0.561 4.561 9 H 0.103 0.897 10 C 0.084 3.916 11 N -0.844 5.844 12 Si 0.852 3.148 13 H -0.271 1.271 14 H -0.267 1.267 15 H -0.260 1.260 16 O -0.369 6.369 17 C 0.085 3.915 18 C -0.028 4.028 19 C -0.115 4.115 20 C -0.016 4.016 21 C -0.671 4.671 22 S 2.702 3.298 23 N -1.250 6.250 24 O -0.959 6.959 25 O -0.962 6.962 26 C -0.020 4.020 27 C -0.131 4.131 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.285 0.715 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.417 0.583 45 H 0.422 0.578 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.479 5.432 -4.233 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 N 0.095 4.905 3 C -0.189 4.189 4 C -0.184 4.184 5 C -0.159 4.159 6 C 0.114 3.886 7 H 0.085 0.915 8 C -0.597 4.597 9 H 0.121 0.879 10 C -0.127 4.127 11 N -0.475 5.475 12 Si 0.678 3.322 13 H -0.198 1.198 14 H -0.192 1.192 15 H -0.184 1.184 16 O -0.288 6.288 17 C 0.009 3.991 18 C -0.029 4.029 19 C -0.134 4.134 20 C -0.035 4.035 21 C -0.759 4.759 22 S 2.790 3.210 23 N -0.925 5.925 24 O -0.949 6.949 25 O -0.952 6.952 26 C -0.040 4.040 27 C -0.150 4.150 28 H 0.135 0.865 29 H 0.099 0.901 30 H 0.185 0.815 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.167 0.833 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.243 0.757 45 H 0.253 0.747 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.468 5.786 -5.020 13.791 hybrid contribution 1.276 0.359 2.104 2.487 sum 12.744 6.145 -2.916 14.446 Atomic orbital electron populations 1.25074 0.74020 1.11956 1.06605 1.45692 1.17230 1.12914 1.14696 1.24091 1.04351 0.82069 1.08395 1.24456 1.04729 1.03028 0.86223 1.25064 1.01526 1.01860 0.87476 1.20611 0.98461 0.84464 0.85105 0.91541 1.20698 0.87565 1.45530 1.05924 0.87901 1.24864 0.95191 0.95557 0.97053 1.69747 1.11634 1.38986 1.27174 0.87362 0.81853 0.78749 0.84220 1.19755 1.19213 1.18445 1.87940 1.45843 1.59307 1.35753 1.21539 0.89505 0.94610 0.93484 1.20016 0.94045 0.94004 0.94787 1.21323 0.99311 0.95806 0.96957 1.21070 0.91924 0.98542 0.91943 1.30644 1.12807 1.08466 1.23959 1.01583 0.72950 0.73524 0.72900 1.53046 1.50343 1.67654 1.21501 1.93633 1.51720 1.66273 1.83240 1.93616 1.83263 1.54943 1.63341 1.20962 0.94512 0.92256 0.96235 1.21124 0.99998 1.00363 0.93516 0.86546 0.90124 0.81522 0.87358 0.86724 0.86980 0.83256 0.88102 0.88303 0.86928 0.88128 0.90383 0.92387 0.90982 0.84208 0.83557 0.75661 0.74731 0.83790 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.19 6.59 60.07 0.40 0.58 16 2 N -0.25 2.02 0.05 -395.63 -0.02 2.00 16 3 C -0.05 0.52 7.93 60.06 0.48 0.99 16 4 C -0.04 0.40 7.20 60.07 0.43 0.83 16 5 C -0.04 0.20 3.88 -3.82 -0.01 0.18 16 6 C 0.17 -0.17 1.92 -27.88 -0.05 -0.23 16 7 H 0.07 0.02 6.47 -51.92 -0.34 -0.32 16 8 C -0.56 -2.21 5.77 -34.44 -0.20 -2.41 16 9 H 0.10 0.70 6.97 -52.49 -0.37 0.33 16 10 C 0.08 0.55 4.30 -17.82 -0.08 0.48 16 11 N -0.84 -8.78 13.96 55.43 0.77 -8.01 16 12 Si 0.85 3.87 24.66 -169.99 -4.19 -0.32 16 13 H -0.27 -0.72 6.85 56.52 0.39 -0.33 16 14 H -0.27 -2.05 7.11 56.52 0.40 -1.65 16 15 H -0.26 -0.81 6.40 56.52 0.36 -0.45 16 16 O -0.37 0.94 5.89 -35.23 -0.21 0.73 16 17 C 0.08 -0.33 5.84 36.01 0.21 -0.11 16 18 C -0.03 0.09 5.51 -104.62 -0.58 -0.49 16 19 C -0.12 0.23 9.70 -39.58 -0.38 -0.15 16 20 C -0.02 0.03 9.52 -39.58 -0.38 -0.35 16 21 C -0.67 1.27 5.94 -39.58 -0.24 1.04 16 22 S 2.70 -2.38 6.28 -107.50 -0.68 -3.05 16 23 N -1.25 5.26 9.55 60.35 0.58 5.83 16 24 O -0.96 -2.81 17.28 -57.17 -0.99 -3.79 16 25 O -0.96 -2.19 17.28 -57.17 -0.99 -3.18 16 26 C -0.02 0.06 9.52 -39.58 -0.38 -0.31 16 27 C -0.13 0.58 9.70 -39.58 -0.38 0.19 16 28 H 0.12 -0.26 6.54 -51.93 -0.34 -0.60 16 29 H 0.08 -0.60 8.01 -51.93 -0.42 -1.02 16 30 H 0.17 -0.33 4.22 -51.93 -0.22 -0.55 16 31 H 0.11 -1.37 8.14 -51.93 -0.42 -1.80 16 32 H 0.11 -1.43 7.95 -51.93 -0.41 -1.84 16 33 H 0.11 -1.16 8.11 -51.93 -0.42 -1.58 16 34 H 0.15 -0.99 5.20 -51.93 -0.27 -1.26 16 35 H 0.10 -1.13 7.86 -51.93 -0.41 -1.54 16 36 H 0.10 -1.05 7.18 -51.93 -0.37 -1.43 16 37 H 0.11 -0.42 3.86 -51.93 -0.20 -0.62 16 38 H 0.10 -0.85 7.88 -51.93 -0.41 -1.25 16 39 H 0.28 2.89 8.31 -40.82 -0.34 2.55 16 40 H 0.06 -0.36 8.08 -51.93 -0.42 -0.78 16 41 H 0.07 -0.21 8.08 -51.93 -0.42 -0.63 16 42 H 0.14 -0.37 8.06 -52.48 -0.42 -0.79 16 43 H 0.15 -0.33 7.62 -52.49 -0.40 -0.73 16 44 H 0.42 -2.72 8.92 -34.47 -0.31 -3.03 16 45 H 0.42 -2.17 8.96 -34.47 -0.31 -2.48 16 46 H 0.14 -0.61 7.62 -52.49 -0.40 -1.01 16 47 H 0.13 -0.97 7.47 -52.49 -0.39 -1.36 16 LS Contribution 370.15 15.07 5.58 5.58 Total: 0.00 -19.98 370.15 -8.16 -28.14 By element: Atomic # 1 Polarization: -17.31 SS G_CDS: -6.85 Total: -24.16 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.16 Total: 0.24 kcal Atomic # 7 Polarization: -1.50 SS G_CDS: 1.33 Total: -0.17 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -2.18 Total: -6.25 kcal Atomic # 14 Polarization: 3.87 SS G_CDS: -4.19 Total: -0.32 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -0.68 Total: -3.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -19.98 -8.16 -28.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223014749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.776 kcal (2) G-P(sol) polarization free energy of solvation -19.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds