Wall clock time and date at job start Wed Apr 1 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46765 * 2 1 4 4 C 1.36937 * 119.99849 * 275.30150 * 3 2 1 5 5 H 1.08005 * 120.00035 * 37.58586 * 4 3 2 6 6 C 1.38807 * 120.00094 * 217.58075 * 4 3 2 7 7 N 1.31615 * 120.00241 * 21.42448 * 6 4 3 8 8 Si 1.86805 * 120.00055 * 201.42323 * 6 4 3 9 9 H 1.48503 * 109.46903 * 60.00177 * 8 6 4 10 10 H 1.48502 * 109.47248 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47302 * 300.00388 * 8 6 4 12 12 C 1.46501 * 120.00109 * 95.30881 * 3 2 1 13 13 C 1.53002 * 109.46749 * 269.99634 * 12 3 2 14 14 C 1.53001 * 109.46940 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99930 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00049 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99810 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.46986 * 180.02562 * 18 16 15 20 20 C 1.50695 * 109.46786 * 179.97438 * 19 18 16 21 21 C 1.41284 * 128.01435 * 269.70213 * 20 19 18 22 22 C 1.50694 * 126.79059 * 0.02562 * 21 20 19 23 23 N 1.30215 * 106.41998 * 179.83888 * 21 20 19 24 24 O 1.20918 * 111.64909 * 0.46097 * 23 21 20 25 25 C 1.34070 * 111.54860 * 359.69873 * 24 23 21 26 26 Cl 1.73601 * 126.79642 * 180.02562 * 25 24 23 27 27 H 1.08991 * 109.47784 * 300.00391 * 1 2 3 28 28 H 1.09009 * 109.46888 * 60.00474 * 1 2 3 29 29 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47601 * 240.00191 * 2 1 3 31 31 H 1.09000 * 109.46800 * 119.99310 * 2 1 3 32 32 H 0.97008 * 120.00408 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47437 * 149.99749 * 12 3 2 34 34 H 1.08999 * 109.47282 * 29.99653 * 12 3 2 35 35 H 1.08993 * 109.47075 * 60.00072 * 13 12 3 36 36 H 1.08999 * 109.47245 * 300.00042 * 13 12 3 37 37 H 1.09005 * 109.47141 * 60.00591 * 14 13 12 38 38 H 1.08999 * 109.47222 * 300.00100 * 14 13 12 39 39 H 0.97004 * 120.00125 * 0.02562 * 15 14 13 40 40 H 1.09001 * 109.46768 * 300.00349 * 18 16 15 41 41 H 1.09003 * 109.47002 * 59.99983 * 18 16 15 42 42 H 1.08999 * 109.47222 * 300.00140 * 19 18 16 43 43 H 1.09005 * 109.46833 * 59.99913 * 19 18 16 44 44 H 1.08999 * 109.47096 * 89.99871 * 22 21 20 45 45 H 1.09001 * 109.47519 * 209.99569 * 22 21 20 46 46 H 1.09002 * 109.47547 * 330.00314 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9289 -1.3728 7 7 4.3025 2.7982 -0.6490 8 14 3.0994 4.2794 -2.6587 9 1 1.9627 5.1784 -2.3348 10 1 4.3618 5.0614 -2.6662 11 1 2.8846 3.6723 -3.9967 12 6 2.3730 2.0328 1.2633 13 6 1.1423 2.7383 1.8364 14 6 1.5127 3.4183 3.1561 15 7 0.3344 4.0944 3.7046 16 6 0.4238 4.7646 4.8704 17 8 1.4799 4.8085 5.4652 18 6 -0.7884 5.4596 5.4349 19 6 -0.4180 6.1397 6.7545 20 6 -1.6300 6.8351 7.3186 21 6 -2.0532 8.1644 7.0949 22 6 -1.3744 9.1940 6.2289 23 7 -3.1480 8.3227 7.7819 24 8 -3.4457 7.3176 8.3846 25 6 -2.5644 6.3317 8.1638 26 17 -2.6100 4.7282 8.8274 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5137 0.8901 32 1 5.0491 3.4029 -0.7834 33 1 3.1615 2.7643 1.0860 34 1 2.7253 1.2835 1.9722 35 1 0.3539 2.0069 2.0137 36 1 0.7900 3.4877 1.1275 37 1 2.3012 4.1497 2.9791 38 1 1.8647 2.6686 3.8648 39 1 -0.5104 4.0590 3.2290 40 1 -1.1401 6.2095 4.7263 41 1 -1.5771 4.7283 5.6114 42 1 -0.0660 5.3901 7.4633 43 1 0.3707 6.8710 6.5775 44 1 -1.7658 9.1298 5.2136 45 1 -1.5659 10.1894 6.6298 46 1 -0.3005 9.0076 6.2167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265147893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:26 Heat of formation + Delta-G solvation = 21.024209 kcal Electronic energy + Delta-G solvation = -26957.239331 eV Core-core repulsion = 22911.494337 eV Total energy + Delta-G solvation = -4045.744994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -45.47707 -39.67793 -37.66353 -36.57256 -36.16026 -34.79533 -33.50805 -31.88350 -31.56269 -30.68574 -29.17810 -28.55168 -26.20774 -24.74830 -23.44841 -21.98820 -21.68897 -21.05529 -20.43898 -19.86319 -18.28749 -18.11563 -16.98522 -16.74044 -16.14844 -15.61770 -15.51592 -15.01500 -14.58596 -14.19899 -13.94439 -13.79415 -13.66646 -13.54403 -13.23572 -13.08945 -12.99710 -12.89584 -12.61445 -12.55221 -12.37699 -12.19753 -11.64367 -11.57242 -11.42569 -11.18461 -11.15087 -11.03696 -10.75769 -10.60330 -10.49981 -10.38441 -10.08208 -9.87507 -9.69702 -9.56725 -9.52084 -8.87085 -8.48753 -6.58047 -5.80302 -3.39542 0.64999 0.77006 1.61861 2.68375 3.12257 3.32013 3.35429 3.40915 3.41897 3.61746 4.12323 4.36938 4.45370 4.52342 4.68974 4.89526 4.96058 5.08896 5.17308 5.23234 5.25034 5.30912 5.38932 5.57905 5.62383 5.66949 5.81963 5.83125 5.96601 6.06731 6.26908 6.33832 6.40793 6.45801 6.56800 6.73067 6.76248 6.89604 7.07462 7.15881 7.61194 7.63486 7.66012 7.80442 8.29160 8.50856 9.18168 9.80462 10.39454 11.19241 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.002056 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.025667 B =13618.518969 C =14676.288854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.725 5.725 16 C 0.509 3.491 17 O -0.544 6.544 18 C -0.137 4.137 19 C -0.030 4.030 20 C -0.163 4.163 21 C 0.035 3.965 22 C -0.080 4.080 23 N -0.348 5.348 24 O 0.109 5.891 25 C -0.001 4.001 26 Cl 0.051 6.949 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.256 0.744 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.399 0.601 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.074 7.214 17.163 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.004 4.004 15 N -0.376 5.376 16 C 0.295 3.705 17 O -0.422 6.422 18 C -0.177 4.177 19 C -0.068 4.068 20 C -0.168 4.168 21 C -0.124 4.124 22 C -0.138 4.138 23 N -0.054 5.054 24 O 0.042 5.958 25 C -0.091 4.091 26 Cl 0.079 6.921 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.233 0.767 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.944 8.172 17.790 24.035 hybrid contribution -0.119 0.023 -0.982 0.990 sum -14.063 8.196 16.808 23.397 Atomic orbital electron populations 1.22368 1.00187 0.98884 1.01080 1.20847 0.91657 0.87409 0.98723 1.43740 1.76071 1.08176 1.02494 1.18933 1.04667 1.21296 0.94182 0.92396 1.25187 0.94207 1.01300 0.98055 1.69988 1.03159 1.37328 1.42368 0.86491 0.76911 0.82392 0.81700 1.20942 1.21594 1.20724 1.20797 0.94446 0.96646 0.85756 1.22536 1.02365 0.99877 0.93915 1.21491 0.87101 0.96130 0.95632 1.46206 1.14600 1.53584 1.23193 1.20489 0.89976 0.79011 0.81060 1.90713 1.30449 1.61289 1.59724 1.21635 0.97415 1.00947 0.97734 1.19711 0.91805 0.99583 0.95675 1.20915 1.00103 0.94301 1.01502 1.23390 0.93448 0.95471 1.00068 1.20272 1.00350 0.95459 0.97673 1.73961 1.16496 1.04609 1.10308 1.84921 1.42696 1.14851 1.53314 1.24633 0.94116 0.88589 1.01761 1.98471 1.97653 1.11572 1.84404 0.93825 0.93284 0.94638 0.93890 0.94847 0.93435 0.88752 0.95692 0.93091 0.91736 0.91504 0.91996 0.76731 0.88649 0.88793 0.89088 0.88830 0.89538 0.90106 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.21 37.16 0.38 -2.51 16 2 C 0.14 2.88 6.44 -4.04 -0.03 2.86 16 3 N -0.58 -13.95 2.43 -173.24 -0.42 -14.38 16 4 C -0.26 -6.88 9.45 -15.06 -0.14 -7.03 16 5 H 0.06 1.53 7.92 -52.48 -0.42 1.12 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -24.93 11.47 55.49 0.64 -24.29 16 8 Si 0.90 21.00 29.60 -169.99 -5.03 15.97 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.15 3.33 5.33 -4.04 -0.02 3.31 16 13 C -0.15 -2.60 5.65 -26.73 -0.15 -2.75 16 14 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 15 N -0.73 -9.20 5.56 -60.29 -0.33 -9.53 16 16 C 0.51 6.44 7.83 -10.98 -0.09 6.36 16 17 O -0.54 -9.00 15.98 5.56 0.09 -8.91 16 18 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16 19 C -0.03 -0.26 4.90 -27.88 -0.14 -0.40 16 20 C -0.16 -1.43 5.58 -104.39 -0.58 -2.01 16 21 C 0.03 0.31 7.32 -82.12 -0.60 -0.29 16 22 C -0.08 -0.51 10.39 36.00 0.37 -0.13 16 23 N -0.35 -3.67 12.07 33.44 0.40 -3.27 16 24 O 0.11 1.10 11.20 17.10 0.19 1.29 16 25 C 0.00 -0.01 8.12 29.82 0.24 0.23 16 26 Cl 0.05 0.38 29.23 -51.86 -1.52 -1.13 16 27 H 0.04 0.73 6.64 -51.93 -0.34 0.39 16 28 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.09 2.39 5.52 -51.93 -0.29 2.11 16 34 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 35 H 0.05 0.85 6.64 -51.93 -0.34 0.50 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 43 H 0.09 0.83 7.60 -51.93 -0.39 0.43 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.48 7.65 -51.93 -0.40 0.08 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -30.83 400.31 -8.10 -38.92 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.12 Total: 0.84 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.02 Total: -1.55 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.28 Total: -51.47 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.28 Total: -7.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.52 Total: -1.13 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.83 -8.10 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265147893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.948 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds