Wall clock time and date at job start Wed Apr 1 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46765 * 2 1 4 4 C 1.36937 * 119.99849 * 275.30150 * 3 2 1 5 5 H 1.08005 * 120.00035 * 37.58586 * 4 3 2 6 6 C 1.38807 * 120.00094 * 217.58075 * 4 3 2 7 7 N 1.31615 * 120.00241 * 21.42448 * 6 4 3 8 8 Si 1.86805 * 120.00055 * 201.42323 * 6 4 3 9 9 H 1.48503 * 109.46903 * 60.00177 * 8 6 4 10 10 H 1.48502 * 109.47248 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47302 * 300.00388 * 8 6 4 12 12 C 1.46501 * 120.00109 * 95.30881 * 3 2 1 13 13 C 1.53002 * 109.46749 * 269.99634 * 12 3 2 14 14 C 1.53001 * 109.46940 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99930 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00049 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99810 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.46986 * 180.02562 * 18 16 15 20 20 C 1.50695 * 109.46786 * 179.97438 * 19 18 16 21 21 C 1.41284 * 128.01435 * 269.70213 * 20 19 18 22 22 C 1.50694 * 126.79059 * 0.02562 * 21 20 19 23 23 N 1.30215 * 106.41998 * 179.83888 * 21 20 19 24 24 O 1.20918 * 111.64909 * 0.46097 * 23 21 20 25 25 C 1.34070 * 111.54860 * 359.69873 * 24 23 21 26 26 Cl 1.73601 * 126.79642 * 180.02562 * 25 24 23 27 27 H 1.08991 * 109.47784 * 300.00391 * 1 2 3 28 28 H 1.09009 * 109.46888 * 60.00474 * 1 2 3 29 29 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47601 * 240.00191 * 2 1 3 31 31 H 1.09000 * 109.46800 * 119.99310 * 2 1 3 32 32 H 0.97008 * 120.00408 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47437 * 149.99749 * 12 3 2 34 34 H 1.08999 * 109.47282 * 29.99653 * 12 3 2 35 35 H 1.08993 * 109.47075 * 60.00072 * 13 12 3 36 36 H 1.08999 * 109.47245 * 300.00042 * 13 12 3 37 37 H 1.09005 * 109.47141 * 60.00591 * 14 13 12 38 38 H 1.08999 * 109.47222 * 300.00100 * 14 13 12 39 39 H 0.97004 * 120.00125 * 0.02562 * 15 14 13 40 40 H 1.09001 * 109.46768 * 300.00349 * 18 16 15 41 41 H 1.09003 * 109.47002 * 59.99983 * 18 16 15 42 42 H 1.08999 * 109.47222 * 300.00140 * 19 18 16 43 43 H 1.09005 * 109.46833 * 59.99913 * 19 18 16 44 44 H 1.08999 * 109.47096 * 89.99871 * 22 21 20 45 45 H 1.09001 * 109.47519 * 209.99569 * 22 21 20 46 46 H 1.09002 * 109.47547 * 330.00314 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9289 -1.3728 7 7 4.3025 2.7982 -0.6490 8 14 3.0994 4.2794 -2.6587 9 1 1.9627 5.1784 -2.3348 10 1 4.3618 5.0614 -2.6662 11 1 2.8846 3.6723 -3.9967 12 6 2.3730 2.0328 1.2633 13 6 1.1423 2.7383 1.8364 14 6 1.5127 3.4183 3.1561 15 7 0.3344 4.0944 3.7046 16 6 0.4238 4.7646 4.8704 17 8 1.4799 4.8085 5.4652 18 6 -0.7884 5.4596 5.4349 19 6 -0.4180 6.1397 6.7545 20 6 -1.6300 6.8351 7.3186 21 6 -2.0532 8.1644 7.0949 22 6 -1.3744 9.1940 6.2289 23 7 -3.1480 8.3227 7.7819 24 8 -3.4457 7.3176 8.3846 25 6 -2.5644 6.3317 8.1638 26 17 -2.6100 4.7282 8.8274 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5137 0.8901 32 1 5.0491 3.4029 -0.7834 33 1 3.1615 2.7643 1.0860 34 1 2.7253 1.2835 1.9722 35 1 0.3539 2.0069 2.0137 36 1 0.7900 3.4877 1.1275 37 1 2.3012 4.1497 2.9791 38 1 1.8647 2.6686 3.8648 39 1 -0.5104 4.0590 3.2290 40 1 -1.1401 6.2095 4.7263 41 1 -1.5771 4.7283 5.6114 42 1 -0.0660 5.3901 7.4633 43 1 0.3707 6.8710 6.5775 44 1 -1.7658 9.1298 5.2136 45 1 -1.5659 10.1894 6.6298 46 1 -0.3005 9.0076 6.2167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265147893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:25 Heat of formation + Delta-G solvation = 3.465085 kcal Electronic energy + Delta-G solvation = -26958.000752 eV Core-core repulsion = 22911.494337 eV Total energy + Delta-G solvation = -4046.506415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.17143 -40.74277 -38.31440 -38.17451 -36.95567 -36.09550 -34.23273 -33.79826 -32.81224 -31.60613 -30.19423 -29.72103 -27.47443 -26.18544 -24.88720 -22.73217 -22.53421 -22.34847 -22.00115 -21.09094 -19.00934 -18.80472 -18.59275 -17.94220 -17.11356 -16.87276 -16.76835 -16.35667 -15.91668 -15.55343 -15.29166 -14.93470 -14.59061 -14.34230 -14.25348 -14.07080 -13.95029 -13.82969 -13.67171 -13.56892 -13.28570 -13.20482 -13.11371 -12.86728 -12.70504 -12.67877 -12.53079 -12.33136 -12.22836 -12.12037 -11.91535 -11.83232 -11.45008 -11.22282 -11.07086 -10.87321 -10.47165 -10.29344 -10.04031 -8.52456 -7.78991 -5.43161 -0.00287 0.08198 0.95519 1.47561 1.49744 1.56211 1.68488 2.23210 2.51724 2.54331 2.98505 3.26159 3.45851 3.69230 3.72131 3.72707 4.00663 4.18591 4.22157 4.26643 4.38735 4.47280 4.54819 4.58715 4.65062 4.67785 4.75315 4.76926 4.80694 4.90726 4.98692 5.02085 5.06284 5.07229 5.18771 5.22694 5.35351 5.48582 5.51513 5.62163 5.71618 5.87269 6.50120 6.61813 6.95449 7.21065 7.30229 7.91034 8.43512 9.15577 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.002056 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.025667 B =13618.518969 C =14676.288854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.264 4.264 5 H 0.055 0.945 6 C -0.036 4.036 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.296 1.296 11 H -0.277 1.277 12 C 0.150 3.850 13 C -0.122 4.122 14 C 0.133 3.867 15 N -0.718 5.718 16 C 0.509 3.491 17 O -0.586 6.586 18 C -0.126 4.126 19 C -0.025 4.025 20 C -0.164 4.164 21 C 0.036 3.964 22 C -0.082 4.082 23 N -0.371 5.371 24 O 0.098 5.902 25 C -0.001 4.001 26 Cl 0.061 6.939 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.251 0.749 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 7.421 17.274 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.394 4.394 5 H 0.072 0.928 6 C -0.233 4.233 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.222 1.222 11 H -0.202 1.202 12 C 0.023 3.977 13 C -0.163 4.163 14 C 0.008 3.992 15 N -0.369 5.369 16 C 0.297 3.703 17 O -0.466 6.466 18 C -0.165 4.165 19 C -0.063 4.063 20 C -0.168 4.168 21 C -0.122 4.122 22 C -0.140 4.140 23 N -0.080 5.080 24 O 0.033 5.967 25 C -0.091 4.091 26 Cl 0.090 6.910 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.251 0.749 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.011 8.355 17.905 25.431 hybrid contribution 0.524 -0.139 -0.979 1.119 sum -15.486 8.216 16.926 24.369 Atomic orbital electron populations 1.22165 0.97211 1.00750 1.00870 1.20996 0.93886 0.85748 0.98543 1.43994 1.76490 1.09534 1.02325 1.19135 1.04101 1.21303 0.94894 0.92785 1.25850 0.93992 1.03348 1.00147 1.70125 1.03756 1.38128 1.44220 0.85560 0.76590 0.79923 0.79698 1.20178 1.22188 1.20223 1.20712 0.95433 0.96084 0.85483 1.22152 1.00508 0.99514 0.94082 1.21101 0.87797 0.95520 0.94765 1.46035 1.14202 1.53256 1.23446 1.21166 0.90598 0.78215 0.80309 1.90703 1.32451 1.62680 1.60779 1.21620 0.95600 1.01542 0.97777 1.19635 0.91712 0.99366 0.95617 1.20879 0.99957 0.94305 1.01687 1.23825 0.92871 0.95980 0.99534 1.20421 1.00722 0.94975 0.97838 1.73966 1.17581 1.05083 1.11363 1.84897 1.43114 1.15068 1.53629 1.24801 0.93913 0.88862 1.01537 1.98476 1.97603 1.10694 1.84265 0.92914 0.94514 0.91727 0.95404 0.93754 0.94004 0.92264 0.95530 0.91232 0.92980 0.93835 0.92330 0.74922 0.86325 0.86783 0.89856 0.88978 0.88247 0.89664 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 10.21 71.98 0.73 -4.13 16 2 C 0.13 5.36 6.44 86.38 0.56 5.92 16 3 N -0.60 -28.64 2.43 -701.99 -1.71 -30.35 16 4 C -0.26 -13.94 9.45 84.03 0.79 -13.15 16 5 H 0.05 2.85 7.92 -2.91 -0.02 2.83 16 6 C -0.04 -1.95 4.95 84.86 0.42 -1.53 16 7 N -0.92 -52.87 11.47 21.65 0.25 -52.62 16 8 Si 0.95 43.42 29.60 68.60 2.03 45.45 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.15 6.64 5.33 86.38 0.46 7.10 16 13 C -0.12 -4.21 5.65 30.60 0.17 -4.04 16 14 C 0.13 4.14 5.67 86.38 0.49 4.63 16 15 N -0.72 -16.81 5.56 -463.04 -2.57 -19.39 16 16 C 0.51 11.99 7.83 87.66 0.69 12.68 16 17 O -0.59 -18.99 15.98 -3.03 -0.05 -19.04 16 18 C -0.13 -1.80 5.68 29.85 0.17 -1.63 16 19 C -0.03 -0.39 4.90 29.85 0.15 -0.25 16 20 C -0.16 -2.57 5.58 -19.71 -0.11 -2.68 16 21 C 0.04 0.59 7.32 43.55 0.32 0.91 16 22 C -0.08 -0.87 10.39 71.23 0.74 -0.13 16 23 N -0.37 -7.45 12.07 -49.42 -0.60 -8.05 16 24 O 0.10 1.88 11.20 71.36 0.80 2.68 16 25 C 0.00 -0.02 8.12 67.23 0.55 0.53 16 26 Cl 0.06 0.84 29.23 -2.72 -0.08 0.76 16 27 H 0.05 1.60 6.64 -2.39 -0.02 1.58 16 28 H 0.04 1.26 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 32 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 33 H 0.06 3.10 5.52 -2.39 -0.01 3.08 16 34 H 0.03 1.13 7.86 -2.39 -0.02 1.11 16 35 H 0.07 2.14 6.64 -2.39 -0.02 2.13 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.41 7.24 8.47 -92.71 -0.79 6.45 16 40 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.45 8.10 -2.39 -0.02 1.44 16 43 H 0.09 1.49 7.60 -2.38 -0.02 1.47 16 44 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 46 H 0.10 0.85 7.65 -2.39 -0.02 0.83 16 Total: -1.00 -67.31 400.31 4.41 -62.90 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.21 Total: 13.44 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.13 Total: 4.22 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.63 Total: -110.41 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.75 Total: -16.37 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -0.08 Total: 0.76 kcal Total: -67.31 4.41 -62.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265147893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.369 kcal (2) G-P(sol) polarization free energy of solvation -67.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds