Wall clock time and date at job start Wed Apr 1 2020 02:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46897 * 109.47438 * 175.00032 * 4 2 1 6 6 C 1.46902 * 111.00214 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47406 * 180.02562 * 6 5 4 8 8 N 1.30737 * 125.53588 * 0.02562 * 7 6 5 9 9 C 1.34449 * 109.94110 * 179.97438 * 8 7 6 10 10 O 1.21722 * 125.92000 * 180.02562 * 9 8 7 11 11 N 1.34993 * 108.15235 * 0.02562 * 9 8 7 12 12 C 1.46497 * 126.85972 * 179.97438 * 11 9 8 13 13 N 1.35157 * 125.54211 * 179.71956 * 7 6 5 14 14 H 0.97000 * 126.64797 * 0.03467 * 13 7 6 15 15 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 16 16 C 1.46499 * 119.99936 * 299.99999 * 15 2 1 17 17 C 1.34777 * 120.00000 * 119.99453 * 15 2 1 18 18 O 1.21274 * 120.00145 * 0.02562 * 17 15 2 19 19 C 1.50696 * 119.99735 * 180.02562 * 17 15 2 20 20 S 1.81008 * 109.47100 * 180.02562 * 19 17 15 21 21 C 1.76197 * 99.99875 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00517 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99834 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99670 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99923 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47151 * 90.00237 * 25 23 21 27 27 H 1.48504 * 109.47043 * 210.00204 * 25 23 21 28 28 H 1.48499 * 109.47095 * 329.99842 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.00902 * 110.99988 * 303.95181 * 5 4 2 35 35 H 1.09003 * 109.47036 * 300.00353 * 6 5 4 36 36 H 1.09003 * 109.47279 * 60.00093 * 6 5 4 37 37 H 1.09003 * 109.47454 * 0.02630 * 12 11 9 38 38 H 1.08998 * 109.47460 * 120.02577 * 12 11 9 39 39 H 1.09004 * 109.47657 * 240.02507 * 12 11 9 40 40 H 1.09000 * 109.46842 * 89.99634 * 16 15 2 41 41 H 1.08994 * 109.47173 * 210.00167 * 16 15 2 42 42 H 1.08998 * 109.46730 * 330.00200 * 16 15 2 43 43 H 1.09002 * 109.47152 * 300.00044 * 19 17 15 44 44 H 1.09000 * 109.47333 * 60.00571 * 19 17 15 45 45 H 0.96999 * 119.99396 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5040 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5318 -1.6043 2.2806 8 7 6.2593 -1.1411 1.2981 9 6 7.5595 -1.3891 1.5338 10 8 8.4878 -1.0830 0.8085 11 7 7.6569 -2.0366 2.7144 12 6 8.8854 -2.5017 3.3628 13 7 6.3454 -2.1702 3.1995 14 1 6.0758 -2.5897 4.0316 15 7 2.0184 -0.6906 -1.1962 16 6 1.6645 -2.0931 -1.4281 17 6 2.7931 -0.0355 -2.0834 18 8 3.0864 1.1255 -1.8913 19 6 3.2950 -0.7457 -3.3141 20 16 4.3012 0.3918 -4.2990 21 6 4.7425 -0.6686 -5.6352 22 1 4.3915 -1.6898 -5.6528 23 6 5.5414 -0.1915 -6.6651 24 7 5.9697 1.0531 -6.6433 25 14 6.0087 -1.3155 -8.0820 26 1 4.9893 -1.2076 -9.1563 27 1 7.3349 -0.9137 -8.6160 28 1 6.0736 -2.7186 -7.6001 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.7517 -0.1584 2.1369 33 1 1.6055 -1.7198 1.2950 34 1 3.7996 -1.2883 0.3432 35 1 3.7557 -0.9589 3.2718 36 1 3.6096 -2.5200 2.4293 37 1 9.7437 -2.2453 2.7417 38 1 8.9859 -2.0229 4.3369 39 1 8.8409 -3.5831 3.4925 40 1 0.7376 -2.1442 -1.9994 41 1 2.4629 -2.5818 -1.9864 42 1 1.5295 -2.5968 -0.4710 43 1 3.9004 -1.6023 -3.0178 44 1 2.4470 -1.0878 -3.9074 45 1 6.5276 1.3866 -7.3633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268050411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:58 Heat of formation + Delta-G solvation = 45.081541 kcal Electronic energy + Delta-G solvation = -27813.268814 eV Core-core repulsion = 23802.903482 eV Total energy + Delta-G solvation = -4010.365333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.40238 -39.69373 -37.56474 -36.88545 -35.28905 -33.99764 -32.28785 -32.16391 -31.63621 -28.79740 -28.50648 -26.75358 -26.39548 -25.34835 -24.24635 -22.01044 -21.41350 -21.22010 -18.97071 -18.63654 -17.60883 -17.05666 -16.72498 -16.53747 -16.11591 -15.76227 -15.45556 -15.21372 -14.68161 -14.58862 -14.55982 -14.06479 -13.78591 -13.54591 -13.21244 -13.16555 -13.09962 -12.89624 -12.68537 -12.39880 -12.29775 -12.26917 -12.05940 -11.85451 -11.49029 -11.12140 -11.00003 -10.95231 -10.88030 -10.63998 -10.28277 -9.88219 -9.66700 -9.15545 -8.93072 -8.74780 -8.66637 -8.38850 -8.04743 -6.32215 -6.07445 -3.76101 1.08155 1.17457 3.04070 3.23204 3.25182 3.31779 3.35273 3.39626 3.39986 3.71735 3.79402 3.99180 4.33469 4.55109 4.59904 4.66240 4.78512 4.82809 4.94785 5.05385 5.11201 5.11609 5.14957 5.23118 5.27262 5.36949 5.38922 5.46856 5.57969 5.58612 5.68980 5.76748 5.82485 6.00375 6.06396 6.16072 6.27870 6.59312 6.80216 6.87804 7.12807 7.66084 7.72792 7.85189 8.17760 8.48652 8.75198 9.37483 11.00037 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.008007 B = 0.003461 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.055932 B = 8087.530285 C =10855.502282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.112 0.888 4 C 0.053 3.947 5 N -0.667 5.667 6 C 0.131 3.869 7 C 0.391 3.609 8 N -0.536 5.536 9 C 0.633 3.367 10 O -0.523 6.523 11 N -0.451 5.451 12 C 0.109 3.891 13 N -0.504 5.504 14 H 0.443 0.557 15 N -0.623 5.623 16 C 0.078 3.922 17 C 0.537 3.463 18 O -0.504 6.504 19 C -0.149 4.149 20 S -0.057 6.057 21 C -0.534 4.534 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.917 3.083 26 H -0.278 1.278 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.363 0.637 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 -12.770 27.721 31.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.130 0.870 4 C -0.077 4.077 5 N -0.301 5.301 6 C -0.002 4.002 7 C 0.116 3.884 8 N -0.283 5.283 9 C 0.332 3.668 10 O -0.393 6.393 11 N -0.282 5.282 12 C -0.033 4.033 13 N -0.237 5.237 14 H 0.289 0.711 15 N -0.360 5.360 16 C -0.066 4.066 17 C 0.325 3.675 18 O -0.377 6.377 19 C -0.300 4.300 20 S 0.170 5.830 21 C -0.682 4.682 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.743 3.257 26 H -0.204 1.204 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.185 0.815 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.689 -9.700 26.962 29.668 hybrid contribution -0.044 -3.842 -0.043 3.842 sum -7.733 -13.542 26.919 31.110 Atomic orbital electron populations 1.22092 0.94810 1.02040 1.02717 1.21027 0.93331 0.99239 0.83058 0.86975 1.22367 0.86816 0.99294 0.99221 1.60057 1.09601 1.56393 1.04078 1.20522 0.82881 0.99060 0.97689 1.23864 0.94975 0.85756 0.83810 1.72045 1.01922 1.28728 1.25584 1.18484 0.88927 0.79759 0.79607 1.91012 1.41765 1.56973 1.49560 1.49554 0.96168 1.59834 1.22691 1.21837 0.82997 0.99737 0.98743 1.44692 0.97733 1.58458 1.22808 0.71087 1.47911 1.52740 1.12196 1.23196 1.21714 1.01362 0.82187 1.01322 1.20263 0.76960 0.86879 0.83407 1.90701 1.55308 1.16545 1.75103 1.23543 1.04063 1.04740 0.97649 1.85453 1.61194 1.14926 1.21426 1.22861 1.37283 0.99794 1.08274 0.91099 1.24975 0.95152 0.95502 0.97957 1.70028 1.33231 1.14386 1.32553 0.86197 0.77922 0.80290 0.81247 1.20394 1.20798 1.19765 0.91577 0.92593 0.91723 0.89694 0.94836 0.81482 0.87191 0.91583 0.87287 0.91229 0.91236 0.92757 0.90685 0.91948 0.89405 0.89616 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.19 37.16 0.34 -0.98 16 2 C 0.14 1.52 2.95 -67.93 -0.20 1.32 16 3 H 0.11 1.63 6.90 -51.93 -0.36 1.27 16 4 C 0.05 0.41 4.98 -3.83 -0.02 0.39 16 5 N -0.67 -6.94 6.24 -115.06 -0.72 -7.66 16 6 C 0.13 0.81 6.31 -4.97 -0.03 0.78 16 7 C 0.39 3.85 7.97 -155.11 -1.24 2.62 16 8 N -0.54 -8.80 10.70 -13.82 -0.15 -8.95 16 9 C 0.63 10.94 8.97 -87.02 -0.78 10.16 16 10 O -0.52 -11.50 17.69 5.17 0.09 -11.41 16 11 N -0.45 -4.87 4.06 -72.07 -0.29 -5.17 16 12 C 0.11 0.71 11.57 59.85 0.69 1.40 16 13 N -0.50 -3.46 7.36 32.73 0.24 -3.22 16 14 H 0.44 0.80 8.96 -182.32 -1.63 -0.84 16 15 N -0.62 -8.37 1.83 -173.94 -0.32 -8.69 16 16 C 0.08 0.76 9.28 59.85 0.56 1.32 16 17 C 0.54 10.46 7.69 -10.99 -0.08 10.38 16 18 O -0.50 -11.97 15.19 5.56 0.08 -11.89 16 19 C -0.15 -3.19 4.71 36.00 0.17 -3.02 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.53 -15.95 9.50 30.94 0.29 -15.66 16 22 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 23 C 0.07 2.19 5.49 -17.43 -0.10 2.10 16 24 N -0.87 -27.42 13.22 55.49 0.73 -26.68 16 25 Si 0.92 22.44 29.55 -169.99 -5.02 17.42 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.03 0.19 6.88 -51.93 -0.36 -0.16 16 34 H 0.36 4.73 7.70 -39.29 -0.30 4.43 16 35 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.11 0.86 7.80 -51.93 -0.41 0.46 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 42 H 0.06 0.43 6.53 -51.93 -0.34 0.09 16 43 H 0.09 1.78 7.40 -51.91 -0.38 1.39 16 44 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 45 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -44.86 391.99 -9.91 -54.77 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.86 Total: -1.39 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -0.39 Total: 10.80 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.50 Total: -60.36 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.18 Total: -23.30 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -44.86 -9.91 -54.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268050411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.852 kcal (2) G-P(sol) polarization free energy of solvation -44.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds