Wall clock time and date at job start Wed Apr 1 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46897 * 109.47438 * 175.00032 * 4 2 1 6 6 C 1.46902 * 111.00214 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47406 * 180.02562 * 6 5 4 8 8 N 1.30737 * 125.53588 * 0.02562 * 7 6 5 9 9 C 1.34449 * 109.94110 * 179.97438 * 8 7 6 10 10 O 1.21722 * 125.92000 * 180.02562 * 9 8 7 11 11 N 1.34993 * 108.15235 * 0.02562 * 9 8 7 12 12 C 1.46497 * 126.85972 * 179.97438 * 11 9 8 13 13 N 1.35157 * 125.54211 * 179.71956 * 7 6 5 14 14 H 0.97000 * 126.64797 * 0.03467 * 13 7 6 15 15 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 16 16 C 1.46499 * 119.99936 * 299.99999 * 15 2 1 17 17 C 1.34777 * 120.00000 * 119.99453 * 15 2 1 18 18 O 1.21274 * 120.00145 * 0.02562 * 17 15 2 19 19 C 1.50696 * 119.99735 * 180.02562 * 17 15 2 20 20 S 1.81008 * 109.47100 * 180.02562 * 19 17 15 21 21 C 1.76197 * 99.99875 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00517 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99834 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99670 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99923 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47151 * 90.00237 * 25 23 21 27 27 H 1.48504 * 109.47043 * 210.00204 * 25 23 21 28 28 H 1.48499 * 109.47095 * 329.99842 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.00902 * 110.99988 * 303.95181 * 5 4 2 35 35 H 1.09003 * 109.47036 * 300.00353 * 6 5 4 36 36 H 1.09003 * 109.47279 * 60.00093 * 6 5 4 37 37 H 1.09003 * 109.47454 * 0.02630 * 12 11 9 38 38 H 1.08998 * 109.47460 * 120.02577 * 12 11 9 39 39 H 1.09004 * 109.47657 * 240.02507 * 12 11 9 40 40 H 1.09000 * 109.46842 * 89.99634 * 16 15 2 41 41 H 1.08994 * 109.47173 * 210.00167 * 16 15 2 42 42 H 1.08998 * 109.46730 * 330.00200 * 16 15 2 43 43 H 1.09002 * 109.47152 * 300.00044 * 19 17 15 44 44 H 1.09000 * 109.47333 * 60.00571 * 19 17 15 45 45 H 0.96999 * 119.99396 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5040 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5318 -1.6043 2.2806 8 7 6.2593 -1.1411 1.2981 9 6 7.5595 -1.3891 1.5338 10 8 8.4878 -1.0830 0.8085 11 7 7.6569 -2.0366 2.7144 12 6 8.8854 -2.5017 3.3628 13 7 6.3454 -2.1702 3.1995 14 1 6.0758 -2.5897 4.0316 15 7 2.0184 -0.6906 -1.1962 16 6 1.6645 -2.0931 -1.4281 17 6 2.7931 -0.0355 -2.0834 18 8 3.0864 1.1255 -1.8913 19 6 3.2950 -0.7457 -3.3141 20 16 4.3012 0.3918 -4.2990 21 6 4.7425 -0.6686 -5.6352 22 1 4.3915 -1.6898 -5.6528 23 6 5.5414 -0.1915 -6.6651 24 7 5.9697 1.0531 -6.6433 25 14 6.0087 -1.3155 -8.0820 26 1 4.9893 -1.2076 -9.1563 27 1 7.3349 -0.9137 -8.6160 28 1 6.0736 -2.7186 -7.6001 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.7517 -0.1584 2.1369 33 1 1.6055 -1.7198 1.2950 34 1 3.7996 -1.2883 0.3432 35 1 3.7557 -0.9589 3.2718 36 1 3.6096 -2.5200 2.4293 37 1 9.7437 -2.2453 2.7417 38 1 8.9859 -2.0229 4.3369 39 1 8.8409 -3.5831 3.4925 40 1 0.7376 -2.1442 -1.9994 41 1 2.4629 -2.5818 -1.9864 42 1 1.5295 -2.5968 -0.4710 43 1 3.9004 -1.6023 -3.0178 44 1 2.4470 -1.0878 -3.9074 45 1 6.5276 1.3866 -7.3633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268050411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:57 Heat of formation + Delta-G solvation = 6.104759 kcal Electronic energy + Delta-G solvation = -27814.958975 eV Core-core repulsion = 23802.903482 eV Total energy + Delta-G solvation = -4012.055493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.33144 -40.94358 -38.68460 -37.99020 -36.24899 -34.88478 -34.57095 -33.16913 -32.54635 -30.15650 -29.31827 -27.71423 -27.62666 -27.09655 -24.94248 -22.90058 -22.48663 -22.09144 -20.21879 -19.53554 -19.42328 -18.19991 -17.82165 -17.49254 -17.02067 -16.88742 -16.84511 -16.61956 -16.33517 -15.93593 -15.34847 -15.33101 -14.62988 -14.49932 -14.47087 -14.39222 -14.13940 -13.88415 -13.69623 -13.44702 -13.22324 -13.16019 -13.04883 -12.97005 -12.88047 -12.76602 -12.57490 -12.36929 -12.22188 -11.81015 -11.66303 -11.14424 -11.12780 -10.97895 -10.71550 -10.22010 -9.67906 -9.60778 -9.19268 -8.63514 -8.32757 -6.10322 0.32933 0.36272 1.27666 1.41990 1.47386 1.58081 1.73996 2.20770 2.28931 2.30170 2.48704 3.00741 3.08518 3.32072 3.44671 3.81089 3.94610 4.06559 4.07631 4.24623 4.32496 4.34831 4.35259 4.40478 4.42652 4.49012 4.57506 4.60623 4.73563 4.79061 4.81992 4.85461 4.91923 4.95320 4.99658 5.26257 5.38027 5.41538 5.79085 6.05257 6.20590 6.28927 6.33861 6.41852 6.94280 7.07514 7.09794 7.32433 8.76888 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.008007 B = 0.003461 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.055932 B = 8087.530285 C =10855.502282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 H 0.066 0.934 4 C 0.063 3.937 5 N -0.706 5.706 6 C 0.134 3.866 7 C 0.403 3.597 8 N -0.608 5.608 9 C 0.610 3.390 10 O -0.603 6.603 11 N -0.444 5.444 12 C 0.101 3.899 13 N -0.463 5.463 14 H 0.471 0.529 15 N -0.603 5.603 16 C 0.068 3.932 17 C 0.534 3.466 18 O -0.562 6.562 19 C -0.121 4.121 20 S -0.159 6.159 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.001 2.999 26 H -0.263 1.263 27 H -0.279 1.279 28 H -0.258 1.258 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.344 0.656 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 -16.930 31.008 37.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 H 0.085 0.915 4 C -0.066 4.066 5 N -0.340 5.340 6 C 0.003 3.997 7 C 0.128 3.872 8 N -0.359 5.359 9 C 0.308 3.692 10 O -0.479 6.479 11 N -0.273 5.273 12 C -0.039 4.039 13 N -0.198 5.198 14 H 0.325 0.675 15 N -0.338 5.338 16 C -0.074 4.074 17 C 0.321 3.679 18 O -0.440 6.440 19 C -0.272 4.272 20 S 0.068 5.932 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.195 4.195 24 N -0.549 5.549 25 Si 0.822 3.178 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.182 1.182 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.683 -13.970 30.435 35.151 hybrid contribution 0.699 -2.629 -0.802 2.836 sum -9.984 -16.599 29.633 35.403 Atomic orbital electron populations 1.22025 0.92185 1.03737 1.02710 1.21298 0.95235 0.97375 0.83510 0.91533 1.22366 0.85439 1.01040 0.97731 1.59996 1.11317 1.58002 1.04648 1.20955 0.79663 1.01970 0.97131 1.24630 0.96458 0.83689 0.82400 1.71904 1.02334 1.32332 1.29313 1.18680 0.88810 0.80779 0.80956 1.90915 1.43785 1.60673 1.52526 1.49497 0.98608 1.57772 1.21397 1.22188 0.80593 1.02010 0.99132 1.44673 0.95573 1.56551 1.22955 0.67548 1.47837 1.50213 1.13466 1.22284 1.22048 1.01578 0.79704 1.04041 1.19967 0.77882 0.86218 0.83802 1.90679 1.58039 1.18895 1.76393 1.23349 1.03253 1.02808 0.97781 1.85665 1.63872 1.19678 1.23946 1.23194 1.37626 1.00050 1.08382 0.90013 1.26193 0.94740 0.97265 1.01262 1.70214 1.34103 1.16807 1.33812 0.84929 0.77757 0.78124 0.76995 1.18771 1.20406 1.18239 0.89179 0.89871 0.94264 0.87112 0.91061 0.83735 0.83449 0.86688 0.89493 0.87962 0.87912 0.91184 0.91587 0.87606 0.88309 0.87677 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.19 71.98 0.66 -1.35 16 2 C 0.13 2.64 2.95 44.99 0.13 2.77 16 3 H 0.07 2.01 6.90 -2.39 -0.02 1.99 16 4 C 0.06 0.71 4.98 86.30 0.43 1.14 16 5 N -0.71 -12.96 6.24 -517.93 -3.23 -16.19 16 6 C 0.13 1.03 6.31 85.56 0.54 1.57 16 7 C 0.40 7.05 7.97 138.02 1.10 8.15 16 8 N -0.61 -20.75 10.70 -316.04 -3.38 -24.13 16 9 C 0.61 22.40 8.97 179.09 1.61 24.01 16 10 O -0.60 -29.26 17.69 -4.42 -0.08 -29.34 16 11 N -0.44 -9.26 4.06 -500.01 -2.03 -11.28 16 12 C 0.10 1.17 11.57 127.77 1.48 2.65 16 13 N -0.46 -4.85 7.36 -50.36 -0.37 -5.22 16 14 H 0.47 -0.78 8.96 -213.08 -1.91 -2.69 16 15 N -0.60 -15.59 1.83 -822.63 -1.51 -17.09 16 16 C 0.07 1.10 9.28 127.77 1.19 2.29 16 17 C 0.53 21.64 7.69 87.66 0.67 22.32 16 18 O -0.56 -28.78 15.19 -3.01 -0.05 -28.83 16 19 C -0.12 -5.33 4.71 71.23 0.34 -4.99 16 20 S -0.16 -9.70 20.57 -56.49 -1.16 -10.86 16 21 C -0.54 -33.56 9.50 67.96 0.65 -32.92 16 22 H 0.08 4.66 7.80 -2.91 -0.02 4.64 16 23 C 0.01 0.59 5.49 84.86 0.47 1.06 16 24 N -0.91 -60.19 13.22 21.65 0.29 -59.91 16 25 Si 1.00 46.73 29.55 68.60 2.03 48.76 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.70 7.67 -2.39 -0.02 0.69 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.30 6.88 -2.39 -0.02 0.28 16 34 H 0.34 8.57 7.70 -89.69 -0.69 7.88 16 35 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.09 1.46 7.80 -2.39 -0.02 1.44 16 38 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.23 6.44 -2.39 -0.02 1.22 16 42 H 0.11 0.84 6.53 -2.39 -0.02 0.82 16 43 H 0.10 4.10 7.40 -2.39 -0.02 4.08 16 44 H 0.11 4.16 8.11 -2.39 -0.02 4.14 16 45 H 0.27 16.51 8.31 -92.71 -0.77 15.74 16 Total: -1.00 -114.68 391.99 -1.80 -116.48 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -1.57 Total: 10.93 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 9.26 Total: 26.69 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -10.24 Total: -133.82 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.12 Total: -58.17 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 16 Polarization: -9.70 SS G_CDS: -1.16 Total: -10.86 kcal Total: -114.68 -1.80 -116.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268050411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.587 kcal (2) G-P(sol) polarization free energy of solvation -114.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -116.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds