Wall clock time and date at job start Wed Apr 1 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.47346 * 305.00031 * 6 5 4 8 8 O 1.42904 * 109.47396 * 64.99580 * 6 5 4 9 9 C 1.52997 * 109.47504 * 184.99955 * 6 5 4 10 10 N 1.46496 * 109.47451 * 180.02562 * 9 6 5 11 11 C 1.34780 * 120.00205 * 180.02562 * 10 9 6 12 12 O 1.21285 * 119.99689 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00103 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47046 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00146 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99424 * 0.02562 * 15 14 13 17 17 C 1.38792 * 120.00425 * 179.97438 * 15 14 13 18 18 N 1.31632 * 120.00233 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99824 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47191 * 89.99777 * 19 17 15 21 21 H 1.48495 * 109.47223 * 209.99955 * 19 17 15 22 22 H 1.48501 * 109.46894 * 329.99924 * 19 17 15 23 23 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 24 24 N 1.30523 * 126.35159 * 285.02989 * 23 2 1 25 25 N 1.28596 * 109.67551 * 179.97438 * 24 23 2 26 26 C 1.30512 * 109.67052 * 359.97438 * 25 24 23 27 27 N 1.35491 * 107.31145 * 359.77283 * 26 25 24 28 28 C 1.46501 * 126.97997 * 180.22466 * 27 26 25 29 29 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 30 30 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 31 31 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 32 32 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 33 33 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 34 34 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 35 35 H 0.96708 * 113.99258 * 60.00195 * 8 6 5 36 36 H 1.09004 * 109.46881 * 300.00361 * 9 6 5 37 37 H 1.09002 * 109.47016 * 59.99741 * 9 6 5 38 38 H 0.97008 * 120.00373 * 359.97438 * 10 9 6 39 39 H 1.09004 * 109.46895 * 300.00081 * 13 11 10 40 40 H 1.09001 * 109.46886 * 59.99404 * 13 11 10 41 41 H 0.96997 * 119.99582 * 180.02562 * 18 17 15 42 42 H 1.08011 * 126.34149 * 179.97438 * 26 25 24 43 43 H 1.09003 * 109.47611 * 270.15207 * 28 27 26 44 44 H 1.08998 * 109.47510 * 30.15919 * 28 27 26 45 45 H 1.09002 * 109.46824 * 150.15573 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 1 1.9691 -1.4081 3.7501 8 8 3.9433 -0.9496 3.3489 9 6 2.5428 0.3850 4.7972 10 7 3.0341 -0.3384 5.9725 11 6 3.0790 0.2754 7.1716 12 8 2.7129 1.4268 7.2775 13 6 3.5839 -0.4690 8.3808 14 16 3.5222 0.6173 9.8272 15 6 4.1487 -0.4766 11.0583 16 1 4.4321 -1.4841 10.7917 17 6 4.2789 -0.0432 12.3704 18 7 4.7474 -0.8603 13.2900 19 14 3.7894 1.6996 12.8314 20 1 2.3584 1.7235 13.2273 21 1 4.6251 2.1645 13.9674 22 1 3.9955 2.5963 11.6657 23 6 2.0323 -0.7105 -1.2304 24 7 2.0332 -1.9999 -1.4330 25 7 2.5336 -2.2560 -2.5896 26 6 2.8741 -1.1417 -3.1775 27 7 2.5608 -0.1287 -2.3341 28 6 2.7570 1.3044 -2.5666 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.4494 -1.4979 1.4101 33 1 2.7588 1.0462 2.1182 34 1 1.0870 0.6163 2.5526 35 1 4.5578 -0.2210 3.1851 36 1 3.1687 1.2600 4.6216 37 1 1.5144 0.7027 4.9694 38 1 3.3266 -1.2595 5.8880 39 1 2.9582 -1.3441 8.5561 40 1 4.6124 -0.7863 8.2087 41 1 4.8381 -0.5574 14.2070 42 1 3.3198 -1.0448 -4.1566 43 1 3.7428 1.5993 -2.2069 44 1 2.6823 1.5129 -3.6338 45 1 1.9918 1.8673 -2.0320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268302227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:34 Heat of formation + Delta-G solvation = -4.437866 kcal Electronic energy + Delta-G solvation = -26359.501161 eV Core-core repulsion = 22346.988506 eV Total energy + Delta-G solvation = -4012.512655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.50184 -39.59394 -38.46878 -36.84382 -35.47125 -34.17536 -32.43582 -32.37526 -30.47345 -29.70439 -28.32945 -28.19260 -25.65595 -25.19569 -23.87826 -22.70752 -22.14257 -20.75603 -20.41414 -17.98341 -17.88932 -17.16040 -16.86374 -16.52898 -16.47139 -15.97698 -15.74177 -15.27856 -15.18344 -14.98225 -14.83749 -14.61669 -14.07103 -13.92476 -13.68605 -13.65838 -13.35733 -13.20508 -13.06418 -12.79315 -12.65233 -12.38862 -12.12287 -11.87558 -11.80449 -11.37450 -11.26853 -11.01044 -10.69344 -10.65935 -10.64390 -10.40529 -9.85751 -9.63789 -9.54866 -9.06038 -8.99574 -8.96061 -8.50380 -6.91767 -6.28304 -4.00242 1.36369 1.94706 2.54045 2.73430 2.94977 3.19495 3.32796 3.47789 3.50141 3.67610 3.78577 3.96809 4.10170 4.14420 4.24728 4.32317 4.33196 4.40093 4.44745 4.55916 4.66082 4.69472 4.76766 4.88941 4.93007 5.00033 5.09540 5.10800 5.18044 5.26494 5.37079 5.49928 5.55212 5.68129 5.74949 5.78560 6.03452 6.25208 6.40639 6.49024 6.77933 7.36097 7.60355 7.94809 8.39127 8.42848 8.46538 9.17733 10.80951 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.034365 B = 0.001533 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.589375 B =18259.613513 C =18564.932709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.175 3.825 3 H 0.093 0.907 4 N -0.665 5.665 5 C 0.030 3.970 6 C 0.101 3.899 7 H 0.106 0.894 8 O -0.543 6.543 9 C 0.091 3.909 10 N -0.730 5.730 11 C 0.531 3.469 12 O -0.523 6.523 13 C -0.124 4.124 14 S -0.143 6.143 15 C -0.522 4.522 16 H 0.089 0.911 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.236 1.236 23 C 0.190 3.810 24 N -0.277 5.277 25 N -0.297 5.297 26 C 0.145 3.855 27 N -0.478 5.478 28 C 0.071 3.929 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.357 0.643 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.375 0.625 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.405 0.595 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.217 0.783 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 5.663 -35.702 36.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.062 3.938 3 H 0.111 0.889 4 N -0.297 5.297 5 C -0.099 4.099 6 C 0.041 3.959 7 H 0.124 0.876 8 O -0.348 6.348 9 C -0.035 4.035 10 N -0.385 5.385 11 C 0.317 3.683 12 O -0.398 6.398 13 C -0.274 4.274 14 S 0.083 5.917 15 C -0.669 4.669 16 H 0.107 0.893 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.160 1.160 23 C -0.079 4.079 24 N -0.117 5.117 25 N -0.136 5.136 26 C -0.142 4.142 27 N -0.169 5.169 28 C -0.073 4.073 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.177 0.823 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.222 0.778 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.240 0.760 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.234 0.766 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.877 5.568 -35.186 36.281 hybrid contribution 0.004 0.992 -0.022 0.992 sum -6.873 6.560 -35.208 36.467 Atomic orbital electron populations 1.22498 0.94619 1.03904 1.02930 1.19648 0.93221 0.95727 0.85223 0.88921 1.60127 1.58143 1.09334 1.02111 1.22659 1.00880 0.95702 0.90705 1.22097 0.85235 0.97640 0.90955 0.87585 1.86650 1.17346 1.37169 1.93602 1.21908 1.00806 0.95365 0.85374 1.45811 1.68061 1.17175 1.07484 1.20305 0.77325 0.87002 0.83650 1.90693 1.46832 1.17266 1.85025 1.23275 1.04655 1.03203 0.96308 1.84748 1.85994 1.20385 1.00549 1.22324 1.49440 1.00929 0.94223 0.89340 1.24713 0.93507 0.97914 0.95165 1.69941 1.43678 1.35733 1.02298 0.86730 0.79533 0.85124 0.80424 1.19232 1.19944 1.15966 1.24659 1.01158 0.91108 0.90940 1.74235 1.17331 1.10709 1.09414 1.74296 1.14155 1.22997 1.02175 1.26444 1.04620 0.83570 0.99574 1.46171 1.46667 1.09313 1.14769 1.22131 1.04000 0.76779 1.04361 0.91043 0.91846 0.90873 0.82253 0.90153 0.93411 0.77755 0.91290 0.90786 0.75983 0.88437 0.88350 0.91948 0.76617 0.89721 0.88776 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.80 9.14 37.15 0.34 -0.46 16 2 C 0.17 0.95 2.89 -68.87 -0.20 0.75 16 3 H 0.09 0.33 6.90 -51.93 -0.36 -0.03 16 4 N -0.66 -4.37 6.18 -107.96 -0.67 -5.04 16 5 C 0.03 0.16 5.12 -3.83 -0.02 0.14 16 6 C 0.10 0.70 3.23 -26.73 -0.09 0.62 16 7 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 8 O -0.54 -4.69 13.03 -35.23 -0.46 -5.15 16 9 C 0.09 0.85 5.34 -4.05 -0.02 0.83 16 10 N -0.73 -8.92 5.45 -60.29 -0.33 -9.25 16 11 C 0.53 9.23 7.85 -10.98 -0.09 9.14 16 12 O -0.52 -10.99 15.86 5.55 0.09 -10.91 16 13 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 14 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 15 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 16 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 19 Si 0.86 21.76 27.74 -169.99 -4.72 17.05 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 23 C 0.19 1.54 6.87 -154.99 -1.07 0.47 16 24 N -0.28 -3.26 12.21 32.79 0.40 -2.86 16 25 N -0.30 -3.41 12.21 29.69 0.36 -3.04 16 26 C 0.15 1.00 12.74 -89.96 -1.15 -0.15 16 27 N -0.48 -2.71 3.15 -122.69 -0.39 -3.09 16 28 C 0.07 0.06 10.84 59.85 0.65 0.71 16 29 H 0.07 0.25 7.45 -51.93 -0.39 -0.14 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 32 H 0.36 2.54 8.47 -39.29 -0.33 2.21 16 33 H 0.08 0.36 8.06 -51.93 -0.42 -0.06 16 34 H 0.05 0.20 7.44 -51.93 -0.39 -0.18 16 35 H 0.38 2.34 9.05 45.56 0.41 2.75 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.41 4.26 8.35 -40.82 -0.34 3.92 16 39 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 40 H 0.10 1.79 8.14 -51.91 -0.42 1.36 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.22 0.51 8.06 -52.48 -0.42 0.09 16 43 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 44 H 0.09 -0.10 8.14 -51.93 -0.42 -0.53 16 45 H 0.09 -0.02 7.47 -51.93 -0.39 -0.41 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -39.84 395.86 -8.16 -48.00 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.00 Total: 1.95 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.20 Total: -2.17 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.16 Total: -49.12 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.37 Total: -16.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.84 -8.16 -48.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268302227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.564 kcal (2) G-P(sol) polarization free energy of solvation -39.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds