Wall clock time and date at job start Wed Apr 1 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47025 * 2 1 4 4 N 1.46907 * 109.46728 * 240.00962 * 2 1 3 5 5 C 1.46897 * 111.00159 * 85.00009 * 4 2 1 6 6 C 1.53004 * 109.46938 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.47537 * 59.99390 * 6 5 4 8 8 O 1.42898 * 109.46765 * 299.99421 * 6 5 4 9 9 C 1.52998 * 109.47183 * 179.97438 * 6 5 4 10 10 N 1.46494 * 109.47219 * 184.99818 * 9 6 5 11 11 C 1.34783 * 119.99963 * 179.97438 * 10 9 6 12 12 O 1.21277 * 119.99749 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99790 * 180.02562 * 11 10 9 14 14 S 1.81001 * 109.46774 * 180.02562 * 13 11 10 15 15 C 1.76206 * 99.99744 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00112 * 359.97438 * 15 14 13 17 17 C 1.38801 * 119.99524 * 179.97438 * 15 14 13 18 18 N 1.31636 * 119.99338 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00527 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46648 * 90.00011 * 19 17 15 21 21 H 1.48494 * 109.47537 * 210.00005 * 19 17 15 22 22 H 1.48500 * 109.47282 * 330.00662 * 19 17 15 23 23 C 1.50693 * 109.47620 * 120.00844 * 2 1 3 24 24 N 1.30520 * 126.34765 * 74.95272 * 23 2 1 25 25 N 1.28595 * 109.67181 * 180.02562 * 24 23 2 26 26 C 1.30528 * 109.67405 * 0.02562 * 25 24 23 27 27 N 1.35492 * 107.30462 * 359.97438 * 26 25 24 28 28 C 1.46500 * 126.97538 * 180.26181 * 27 26 25 29 29 H 1.09002 * 109.46756 * 299.99480 * 1 2 3 30 30 H 1.08996 * 109.47459 * 59.99632 * 1 2 3 31 31 H 1.09007 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.00905 * 110.99605 * 208.95259 * 4 2 1 33 33 H 1.09002 * 109.46871 * 299.99198 * 5 4 2 34 34 H 1.09002 * 109.47600 * 59.99878 * 5 4 2 35 35 H 0.96701 * 114.00396 * 299.99711 * 8 6 5 36 36 H 1.09005 * 109.47153 * 304.99847 * 9 6 5 37 37 H 1.09002 * 109.47267 * 64.99758 * 9 6 5 38 38 H 0.97001 * 120.00153 * 359.97438 * 10 9 6 39 39 H 1.08999 * 109.47060 * 299.99519 * 13 11 10 40 40 H 1.08992 * 109.47694 * 60.00150 * 13 11 10 41 41 H 0.96998 * 119.99613 * 180.02562 * 18 17 15 42 42 H 1.07996 * 126.34178 * 180.02562 * 26 25 24 43 43 H 1.08995 * 109.47396 * 269.68188 * 28 27 26 44 44 H 1.08996 * 109.47334 * 29.68564 * 28 27 26 45 45 H 1.09003 * 109.46770 * 149.68395 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6923 -1.1996 5 6 2.0823 0.2229 -2.3469 6 6 2.5948 -0.5328 -3.5747 7 1 1.9182 -1.3562 -3.8032 8 8 3.8997 -1.0494 -3.3055 9 6 2.6596 0.4202 -4.7698 10 7 3.0355 -0.3284 -5.9716 11 6 3.1544 0.3092 -7.1531 12 8 2.9498 1.5026 -7.2213 13 6 3.5405 -0.4611 -8.3895 14 16 3.6173 0.6664 -9.8033 15 6 4.0765 -0.4658 -11.0729 16 1 4.2204 -1.5102 -10.8389 17 6 4.2534 -0.0152 -12.3738 18 7 4.5960 -0.8611 -13.3224 19 14 4.0039 1.7912 -12.7787 20 1 5.2894 2.5169 -12.6166 21 1 3.5340 1.9240 -14.1811 22 1 2.9902 2.3691 -11.8601 23 6 2.0324 -0.7105 1.2303 24 7 2.0330 -1.9999 1.4329 25 7 2.5336 -2.2562 2.5894 26 6 2.8745 -1.1418 3.1773 27 7 2.5664 -0.1292 2.3315 28 6 2.7741 1.3031 2.5591 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 2.9173 -1.1204 -1.0290 33 1 1.0869 0.6165 -2.5525 34 1 2.7588 1.0465 -2.1182 35 1 4.5554 -0.3709 -3.0939 36 1 1.6836 0.8819 -4.9197 37 1 3.4021 1.1947 -4.5772 38 1 3.1988 -1.2830 -5.9171 39 1 4.5166 -0.9227 -8.2399 40 1 2.7980 -1.2355 -8.5818 41 1 4.7200 -0.5462 -14.2314 42 1 3.3204 -1.0451 4.1562 43 1 1.8890 1.7278 3.0326 44 1 3.6377 1.4464 3.2084 45 1 2.9500 1.8007 1.6053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268302229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:37 Heat of formation + Delta-G solvation = -4.155008 kcal Electronic energy + Delta-G solvation = -26373.979018 eV Core-core repulsion = 22361.478629 eV Total energy + Delta-G solvation = -4012.500390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.63755 -39.61673 -38.49918 -36.77211 -35.56215 -34.24285 -32.43400 -32.38294 -30.50154 -29.78035 -28.48692 -28.28957 -25.67398 -25.29395 -23.64456 -22.80131 -22.06119 -20.69704 -20.41321 -18.00459 -17.97596 -17.16862 -16.94164 -16.87297 -16.42943 -16.27105 -15.75252 -15.34537 -15.08834 -14.99258 -14.84984 -14.58350 -14.08261 -14.01321 -13.71272 -13.55259 -13.27478 -13.19200 -12.92153 -12.79056 -12.69419 -12.42972 -12.01969 -11.87080 -11.74182 -11.38006 -11.26747 -11.00910 -10.79545 -10.76104 -10.69401 -10.49053 -9.85785 -9.74794 -9.55052 -9.06868 -9.02361 -8.97877 -8.50248 -6.91595 -6.28192 -4.00076 1.23255 1.83699 2.43036 2.73186 2.95120 3.17893 3.32742 3.46234 3.50243 3.58144 3.68954 3.89064 4.01095 4.05206 4.19836 4.32505 4.33327 4.41669 4.54460 4.58934 4.60752 4.70258 4.76931 4.89223 5.04970 5.06508 5.10796 5.13224 5.25928 5.27939 5.33817 5.54380 5.59238 5.70571 5.78092 5.79424 6.03612 6.21604 6.35055 6.48651 6.79777 7.20459 7.59776 7.94962 8.27878 8.43048 8.46499 9.17829 10.81076 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.034389 B = 0.001534 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.025056 B =18254.463902 C =18549.781517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.179 3.821 3 H 0.058 0.942 4 N -0.664 5.664 5 C 0.030 3.970 6 C 0.099 3.901 7 H 0.118 0.882 8 O -0.553 6.553 9 C 0.092 3.908 10 N -0.731 5.731 11 C 0.531 3.469 12 O -0.523 6.523 13 C -0.124 4.124 14 S -0.143 6.143 15 C -0.521 4.521 16 H 0.089 0.911 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.236 1.236 23 C 0.164 3.836 24 N -0.264 5.264 25 N -0.296 5.296 26 C 0.149 3.851 27 N -0.477 5.477 28 C 0.070 3.930 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.356 0.644 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.373 0.627 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.405 0.595 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.219 0.781 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 5.772 36.251 37.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 H 0.076 0.924 4 N -0.299 5.299 5 C -0.101 4.101 6 C 0.039 3.961 7 H 0.136 0.864 8 O -0.358 6.358 9 C -0.033 4.033 10 N -0.385 5.385 11 C 0.317 3.683 12 O -0.398 6.398 13 C -0.274 4.274 14 S 0.083 5.917 15 C -0.669 4.669 16 H 0.107 0.893 17 C -0.113 4.113 18 N -0.516 5.516 19 Si 0.682 3.318 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.160 1.160 23 C -0.104 4.104 24 N -0.105 5.105 25 N -0.136 5.136 26 C -0.138 4.138 27 N -0.169 5.169 28 C -0.074 4.074 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.177 0.823 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.220 0.780 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.240 0.760 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.236 0.764 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.238 5.449 35.443 36.398 hybrid contribution 1.626 1.404 0.466 2.198 sum -4.612 6.853 35.909 36.847 Atomic orbital electron populations 1.21805 0.91958 1.04051 1.01771 1.19791 0.96870 0.93482 0.83188 0.92412 1.60356 1.35302 1.31726 1.02468 1.22673 1.02279 0.93799 0.91301 1.22221 0.85360 0.97254 0.91275 0.86380 1.86673 1.19338 1.37751 1.91999 1.21901 1.01772 0.94708 0.84945 1.45825 1.72714 1.12610 1.07399 1.20302 0.76173 0.87873 0.83922 1.90691 1.48659 1.14987 1.85465 1.23274 1.05139 1.03049 0.95985 1.84750 1.91499 1.14950 1.00489 1.22326 1.53902 0.96746 0.93934 0.89336 1.24717 0.93290 0.98275 0.95030 1.69944 1.45205 1.34841 1.01659 0.86729 0.80746 0.85036 0.79292 1.19251 1.19936 1.15955 1.24870 1.02212 0.91412 0.91902 1.74367 1.16223 1.10473 1.09403 1.74365 1.14128 1.22928 1.02131 1.26527 1.04362 0.83520 0.99418 1.46250 1.46323 1.09483 1.14813 1.22159 1.04090 0.76692 1.04420 0.92607 0.91164 0.90483 0.82282 0.89157 0.94507 0.77998 0.90557 0.91453 0.76035 0.88417 0.88354 0.91950 0.76432 0.89624 0.88621 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.40 37.16 0.35 -0.43 16 2 C 0.18 1.04 3.01 -68.87 -0.21 0.83 16 3 H 0.06 0.21 6.56 -51.93 -0.34 -0.13 16 4 N -0.66 -4.59 6.30 -107.95 -0.68 -5.27 16 5 C 0.03 0.16 5.19 -3.82 -0.02 0.14 16 6 C 0.10 0.70 3.27 -26.73 -0.09 0.61 16 7 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 8 O -0.55 -4.33 12.62 -35.23 -0.44 -4.78 16 9 C 0.09 0.87 5.31 -4.05 -0.02 0.85 16 10 N -0.73 -8.96 5.50 -60.30 -0.33 -9.29 16 11 C 0.53 9.25 7.85 -10.98 -0.09 9.17 16 12 O -0.52 -11.01 15.86 5.56 0.09 -10.93 16 13 C -0.12 -2.40 6.16 36.01 0.22 -2.17 16 14 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 15 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 16 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 19 Si 0.86 21.78 27.74 -169.99 -4.71 17.06 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.24 -5.97 6.74 56.52 0.38 -5.58 16 23 C 0.16 1.27 6.52 -154.99 -1.01 0.26 16 24 N -0.26 -3.04 12.21 32.79 0.40 -2.64 16 25 N -0.30 -3.23 12.21 29.69 0.36 -2.87 16 26 C 0.15 0.93 12.74 -89.94 -1.15 -0.22 16 27 N -0.48 -2.43 3.15 -122.69 -0.39 -2.82 16 28 C 0.07 0.03 11.00 59.85 0.66 0.69 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.34 7.45 -51.93 -0.39 -0.05 16 31 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.36 2.90 7.74 -39.29 -0.30 2.60 16 33 H 0.09 0.45 7.44 -51.93 -0.39 0.07 16 34 H 0.04 0.16 8.06 -51.93 -0.42 -0.26 16 35 H 0.37 1.88 9.05 45.56 0.41 2.29 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 4.25 8.47 -40.82 -0.35 3.90 16 39 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 40 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.22 0.37 8.06 -52.49 -0.42 -0.05 16 43 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 44 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 45 H 0.09 -0.02 7.06 -51.93 -0.37 -0.39 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -39.26 394.55 -8.06 -47.32 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.94 Total: 2.08 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.13 Total: -2.34 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.14 Total: -48.74 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.36 Total: -15.71 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.26 -8.06 -47.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268302229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.165 kcal (2) G-P(sol) polarization free energy of solvation -39.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds